RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 RGPD1P0DJD0 1748 aa11.45□□□□□ -0.58
NUP88-211ENST00000575976 TATP17735 454 aaPredicted RBP11.44□□□□□ -0.58
NUP88-211ENST00000575976 CDCA7Q9BWT1 371 aaPredicted RBP11.44□□□□□ -0.58
NUP88-211ENST00000575976 MEGF6O75095 1541 aa11.44□□□□□ -0.58
NUP88-211ENST00000575976 KDRP35968 1356 aa11.43□□□□□ -0.58
NUP88-211ENST00000575976 EXOC5O00471 708 aa11.42□□□□□ -0.58
NUP88-211ENST00000575976 WDR43Q15061 677 aaKnown RBP eCLIP11.42□□□□□ -0.58
NUP88-211ENST00000575976 DDB1Q16531 1140 aa11.42□□□□□ -0.58
NUP88-211ENST00000575976 PNISRQ8TF01 805 aaKnown RBP11.42□□□□□ -0.58
NUP88-211ENST00000575976 RSPH6AQ9H0K4 717 aa11.42□□□□□ -0.58
NUP88-211ENST00000575976 ADAMTS8Q9UP79 889 aa11.42□□□□□ -0.58
NUP88-211ENST00000575976 THSD7AQ9UPZ6 1657 aa11.42□□□□□ -0.58
NUP88-211ENST00000575976 CCER2I3L3R5 266 aa11.41□□□□□ -0.58
NUP88-211ENST00000575976 FCHSD2O94868 740 aa11.41□□□□□ -0.58
NUP88-211ENST00000575976 PRKAR2BP31323 418 aa11.41□□□□□ -0.58
NUP88-211ENST00000575976 ZCRB1Q8TBF4 217 aaKnown RBP11.41□□□□□ -0.58
NUP88-211ENST00000575976 OVOS2A0A0G2JMS6 1433 aa11.41□□□□□ -0.58
NUP88-211ENST00000575976 WNK3Q9BYP7 1800 aa11.4□□□□□ -0.58
NUP88-211ENST00000575976 PDE3BQ13370 1112 aa11.4□□□□□ -0.58
NUP88-211ENST00000575976 PLEKHO1Q53GL0 409 aaPredicted RBP11.4□□□□□ -0.58
NUP88-211ENST00000575976 IFFO2Q5TF58 517 aa11.4□□□□□ -0.58
NUP88-211ENST00000575976 DEFB132Q7Z7B7 95 aa11.4□□□□□ -0.58
NUP88-211ENST00000575976 YY1P25490 414 aa11.39□□□□□ -0.59
NUP88-211ENST00000575976 FAM182BQ5T319 152 aa11.39□□□□□ -0.59
NUP88-211ENST00000575976 TNS2Q63HR2 1409 aa11.39□□□□□ -0.59
NUP88-211ENST00000575976 KRT27Q7Z3Y8 459 aa11.39□□□□□ -0.59
NUP88-211ENST00000575976 DDX54Q8TDD1 881 aaKnown RBP11.39□□□□□ -0.59
NUP88-211ENST00000575976 PHACTR3Q96KR7 559 aa11.39□□□□□ -0.59
NUP88-211ENST00000575976 PLEKHF1Q96S99 279 aa11.39□□□□□ -0.59
NUP88-211ENST00000575976 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.39□□□□□ -0.596e-6■□□□□ 8.9
NUP88-211ENST00000575976 PARP4Q9UKK3 1724 aaKnown RBP11.39□□□□□ -0.59
NUP88-211ENST00000575976 SPG7Q9UQ90 795 aa11.39□□□□□ -0.59
NUP88-211ENST00000575976 LRRC37A3O60309 1634 aa11.38□□□□□ -0.59
NUP88-211ENST00000575976 CYP27B1O15528 508 aa11.38□□□□□ -0.59
NUP88-211ENST00000575976 BAG6P46379 1132 aa11.38□□□□□ -0.59
NUP88-211ENST00000575976 MTHFSDQ2M296 383 aaKnown RBP11.38□□□□□ -0.59
NUP88-211ENST00000575976 AMOTQ4VCS5 1084 aa11.38□□□□□ -0.59
NUP88-211ENST00000575976 CCDC146Q8IYE0 955 aa11.38□□□□□ -0.59
NUP88-211ENST00000575976 MARCH10Q8NA82 808 aaPredicted RBP11.38□□□□□ -0.59
NUP88-211ENST00000575976 PNNQ9H307 717 aaKnown RBP11.38□□□□□ -0.59
NUP88-211ENST00000575976 FAM9BQ8IZU0 186 aa11.37□□□□□ -0.59
NUP88-211ENST00000575976 PLEKHG2Q9H7P9 1386 aa11.37□□□□□ -0.59
NUP88-211ENST00000575976 BRWD3Q6RI45 1802 aa11.37□□□□□ -0.59
NUP88-211ENST00000575976 PCDH11XQ9BZA7 1347 aa11.36□□□□□ -0.59
NUP88-211ENST00000575976 PCDH11YQ9BZA8 1340 aa11.36□□□□□ -0.59
NUP88-211ENST00000575976 NEFMP07197 916 aa11.36□□□□□ -0.59
NUP88-211ENST00000575976 PHKG2P15735 406 aa11.36□□□□□ -0.59
NUP88-211ENST00000575976 ZNF530Q6P9A1 599 aaPredicted RBP11.36□□□□□ -0.59
NUP88-211ENST00000575976 IFNL2Q8IZJ0 200 aa11.36□□□□□ -0.59
NUP88-211ENST00000575976 PKD1L3Q7Z443 1732 aa11.35□□□□□ -0.59
NUP88-211ENST00000575976 PSDA5PKW4 1024 aaPredicted RBP11.35□□□□□ -0.59
NUP88-211ENST00000575976 DCAF8L1A6NGE4 600 aa11.35□□□□□ -0.59
NUP88-211ENST00000575976 GAS2L2Q8NHY3 880 aa11.35□□□□□ -0.59
NUP88-211ENST00000575976 RUNDC1Q96C34 613 aa11.35□□□□□ -0.59
NUP88-211ENST00000575976 SHANK3Q9BYB0 1731 aa11.35□□□□□ -0.59
NUP88-211ENST00000575976 MAPK8IP3Q9UPT6 1336 aa11.35□□□□□ -0.59
NUP88-211ENST00000575976 NKX1-1Q15270 411 aaPredicted RBP11.34□□□□□ -0.59
NUP88-211ENST00000575976 AKAP4Q5JQC9 854 aa11.34□□□□□ -0.59
NUP88-211ENST00000575976 C1orf141Q5JVX7 400 aa11.34□□□□□ -0.59
NUP88-211ENST00000575976 FAM196AQ6ZSG2 479 aa11.33□□□□□ -0.6
NUP88-211ENST00000575976 APAF1O14727 1248 aa11.32□□□□□ -0.6
NUP88-211ENST00000575976 HSP90AB1P08238 724 aaKnown RBP11.32□□□□□ -0.6
NUP88-211ENST00000575976 TMPOP42166 694 aaKnown RBP11.32□□□□□ -0.6
NUP88-211ENST00000575976 NFE2L2Q16236 605 aa11.32□□□□□ -0.6
NUP88-211ENST00000575976 MPRIPQ6WCQ1 1025 aa11.32□□□□□ -0.6
NUP88-211ENST00000575976 ACSBG1Q96GR2 724 aa11.32□□□□□ -0.6
NUP88-211ENST00000575976 RRP7AQ9Y3A4 280 aaKnown RBP11.32□□□□□ -0.6
NUP88-211ENST00000575976 SENP3-EIF4A1A0A087X0R7 540 aa11.31□□□□□ -0.6
NUP88-211ENST00000575976 GNAT3A8MTJ3 354 aa11.31□□□□□ -0.6
NUP88-211ENST00000575976 DCAF5Q96JK2 942 aa11.31□□□□□ -0.6
NUP88-211ENST00000575976 LGR6Q9HBX8 967 aa11.31□□□□□ -0.6
NUP88-211ENST00000575976 BCL9O00512 1426 aa11.31□□□□□ -0.6
NUP88-211ENST00000575976 MAP3K5Q99683 1374 aa11.3□□□□□ -0.6
NUP88-211ENST00000575976 KDM6AO15550 1401 aaPredicted RBP11.3□□□□□ -0.6
NUP88-211ENST00000575976 RNMTO43148 476 aaKnown RBP11.3□□□□□ -0.6
NUP88-211ENST00000575976 KCNQ2O43526 872 aa11.3□□□□□ -0.6
NUP88-211ENST00000575976 TRIM37O94972 964 aa11.3□□□□□ -0.6
NUP88-211ENST00000575976 PRIM1P49642 420 aaKnown RBP11.3□□□□□ -0.6
NUP88-211ENST00000575976 RIPK4P57078 832 aa11.3□□□□□ -0.6
NUP88-211ENST00000575976 DCTN1Q14203 1278 aa11.3□□□□□ -0.6
NUP88-211ENST00000575976 NEUROD2Q15784 382 aa11.3□□□□□ -0.6
NUP88-211ENST00000575976 PTF1AQ7RTS3 328 aa11.3□□□□□ -0.6
NUP88-211ENST00000575976 IL17REQ8NFR9 667 aa11.3□□□□□ -0.6
NUP88-211ENST00000575976 MCM10Q7L590 875 aa11.29□□□□□ -0.6
NUP88-211ENST00000575976 RTF1Q92541 710 aaKnown RBP11.29□□□□□ -0.6
NUP88-211ENST00000575976 SYTL4Q96C24 671 aaPredicted RBP11.29□□□□□ -0.6
NUP88-211ENST00000575976 ERVV-2B6SEH9 535 aa11.28□□□□□ -0.6
NUP88-211ENST00000575976 HTATSF1O43719 755 aaKnown RBP11.28□□□□□ -0.6
NUP88-211ENST00000575976 R3HDM1Q15032 1099 aaKnown RBP11.28□□□□□ -0.6
NUP88-211ENST00000575976 CABP4P57796 275 aa11.27□□□□□ -0.61
NUP88-211ENST00000575976 THUMPD2Q9BTF0 503 aaKnown RBP11.27□□□□□ -0.61
NUP88-211ENST00000575976 BCL11BQ9C0K0 894 aaPredicted RBP11.27□□□□□ -0.61
NUP88-211ENST00000575976 TRIM35Q9UPQ4 493 aa11.27□□□□□ -0.61
NUP88-211ENST00000575976 SALL2Q9Y467 1007 aaPredicted RBP11.27□□□□□ -0.61
NUP88-211ENST00000575976 TOGARAM1Q9Y4F4 1720 aa11.26□□□□□ -0.61
NUP88-211ENST00000575976 EN1Q05925 392 aaPredicted RBP11.26□□□□□ -0.61
NUP88-211ENST00000575976 LMOD3Q0VAK6 560 aa11.26□□□□□ -0.61
NUP88-211ENST00000575976 NFATC2IPQ8NCF5 419 aa11.26□□□□□ -0.61
NUP88-211ENST00000575976 PIGBQ92521 554 aa11.26□□□□□ -0.61
NUP88-211ENST00000575976 SLC52A2Q9HAB3 445 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms