RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 SEPT12Q8IYM1 358 aa24.28■■□□□ 1.48
CCDC40-213ENST00000574933 TNS2Q63HR2 1409 aa24.27■■□□□ 1.48
CCDC40-213ENST00000574933 TATP17735 454 aaPredicted RBP24.27■■□□□ 1.48
CCDC40-213ENST00000574933 MIER1Q8N108 512 aa24.27■■□□□ 1.48
CCDC40-213ENST00000574933 RSPH6AQ9H0K4 717 aa24.27■■□□□ 1.48
CCDC40-213ENST00000574933 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.27■■□□□ 1.48
CCDC40-213ENST00000574933 HMOX1P09601 288 aa24.26■■□□□ 1.47
CCDC40-213ENST00000574933 PNISRQ8TF01 805 aaKnown RBP24.26■■□□□ 1.47
CCDC40-213ENST00000574933 VIRMAQ69YN4 1812 aaKnown RBP24.24■■□□□ 1.47
CCDC40-213ENST00000574933 EXOC5O00471 708 aa24.23■■□□□ 1.47
CCDC40-213ENST00000574933 WDR43Q15061 677 aaKnown RBP eCLIP24.23■■□□□ 1.47
CCDC40-213ENST00000574933 DDB1Q16531 1140 aa24.23■■□□□ 1.47
CCDC40-213ENST00000574933 ZCRB1Q8TBF4 217 aaKnown RBP24.22■■□□□ 1.47
CCDC40-213ENST00000574933 KAT6BQ8WYB5 2073 aa24.22■■□□□ 1.47
CCDC40-213ENST00000574933 DLG5Q8TDM6 1919 aa24.22■■□□□ 1.47
CCDC40-213ENST00000574933 AMOTQ4VCS5 1084 aa24.21■■□□□ 1.47
CCDC40-213ENST00000574933 PNNQ9H307 717 aaKnown RBP24.21■■□□□ 1.47
CCDC40-213ENST00000574933 SBF2Q86WG5 1849 aa24.2■■□□□ 1.46
CCDC40-213ENST00000574933 PRKAR2BP31323 418 aa24.2■■□□□ 1.46
CCDC40-213ENST00000574933 PLEKHF1Q96S99 279 aa24.2■■□□□ 1.46
CCDC40-213ENST00000574933 ADAMTS8Q9UP79 889 aa24.2■■□□□ 1.46
CCDC40-213ENST00000574933 PLEKHO1Q53GL0 409 aaPredicted RBP24.19■■□□□ 1.46
CCDC40-213ENST00000574933 SPG7Q9UQ90 795 aa24.19■■□□□ 1.46
CCDC40-213ENST00000574933 A0A0G2JS52 829 aa24.18■■□□□ 1.46
CCDC40-213ENST00000574933 MYT1Q01538 1121 aa24.18■■□□□ 1.46
CCDC40-213ENST00000574933 PCDH11XQ9BZA7 1347 aa24.17■■□□□ 1.46
CCDC40-213ENST00000574933 PCDH11YQ9BZA8 1340 aa24.17■■□□□ 1.46
CCDC40-213ENST00000574933 KRT27Q7Z3Y8 459 aa24.17■■□□□ 1.46
CCDC40-213ENST00000574933 BCL9O00512 1426 aa24.17■■□□□ 1.46
CCDC40-213ENST00000574933 PDE3BQ13370 1112 aa24.16■■□□□ 1.46
CCDC40-213ENST00000574933 MARCH10Q8NA82 808 aaPredicted RBP24.16■■□□□ 1.46
CCDC40-213ENST00000574933 SCN11AQ9UI33 1791 aa24.16■■□□□ 1.46
CCDC40-213ENST00000574933 PHACTR3Q96KR7 559 aa24.15■■□□□ 1.46
CCDC40-213ENST00000574933 ADAMTS7Q9UKP4 1686 aa24.15■■□□□ 1.46
CCDC40-213ENST00000574933 CYP27B1O15528 508 aa24.14■■□□□ 1.45
CCDC40-213ENST00000574933 NKX1-1Q15270 411 aaPredicted RBP24.13■■□□□ 1.45
CCDC40-213ENST00000574933 MTHFSDQ2M296 383 aaKnown RBP24.13■■□□□ 1.45
CCDC40-213ENST00000574933 IFNL2Q8IZJ0 200 aa24.12■■□□□ 1.45
CCDC40-213ENST00000574933 GAS2L2Q8NHY3 880 aa24.12■■□□□ 1.45
CCDC40-213ENST00000574933 RUNDC1Q96C34 613 aa24.12■■□□□ 1.45
CCDC40-213ENST00000574933 ITGB4P16144 1822 aa24.12■■□□□ 1.45
CCDC40-213ENST00000574933 PHKG2P15735 406 aa24.11■■□□□ 1.45
CCDC40-213ENST00000574933 ZNF530Q6P9A1 599 aaPredicted RBP24.11■■□□□ 1.45
CCDC40-213ENST00000574933 DOT1LQ8TEK3 1739 aa24.1■■□□□ 1.45
CCDC40-213ENST00000574933 TOGARAM1Q9Y4F4 1720 aa24.1■■□□□ 1.45
CCDC40-213ENST00000574933 NEFMP07197 916 aa24.1■■□□□ 1.45
CCDC40-213ENST00000574933 DDX54Q8TDD1 881 aaKnown RBP24.1■■□□□ 1.45
CCDC40-213ENST00000574933 AKAP4Q5JQC9 854 aa24.09■■□□□ 1.45
CCDC40-213ENST00000574933 MAPK8IP3Q9UPT6 1336 aa24.09■■□□□ 1.45
CCDC40-213ENST00000574933 NHSQ6T4R5 1651 aa24.08■■□□□ 1.44
CCDC40-213ENST00000574933 HSP90AB1P08238 724 aaKnown RBP24.07■■□□□ 1.44
CCDC40-213ENST00000574933 C1orf141Q5JVX7 400 aa24.07■■□□□ 1.44
CCDC40-213ENST00000574933 FAM196AQ6ZSG2 479 aa24.07■■□□□ 1.44
CCDC40-213ENST00000574933 FAM9BQ8IZU0 186 aa24.07■■□□□ 1.44
CCDC40-213ENST00000574933 NFE2L2Q16236 605 aa24.06■■□□□ 1.44
CCDC40-213ENST00000574933 CCDC146Q8IYE0 955 aa24.06■■□□□ 1.44
CCDC40-213ENST00000574933 MAP3K5Q99683 1374 aa24.05■■□□□ 1.44
CCDC40-213ENST00000574933 ILDR2Q71H61 639 aa24.05■■□□□ 1.44
CCDC40-213ENST00000574933 SIPA1L3O60292 1781 aaPredicted RBP24.04■■□□□ 1.44
CCDC40-213ENST00000574933 KDM6AO15550 1401 aaPredicted RBP24.04■■□□□ 1.44
CCDC40-213ENST00000574933 DCAF5Q96JK2 942 aa24.04■■□□□ 1.44
CCDC40-213ENST00000574933 GNAT3A8MTJ3 354 aa24.03■■□□□ 1.44
CCDC40-213ENST00000574933 HTATSF1O43719 755 aaKnown RBP24.03■■□□□ 1.44
CCDC40-213ENST00000574933 TMPOP42166 694 aaKnown RBP24.03■■□□□ 1.44
CCDC40-213ENST00000574933 FAM182BQ5T319 152 aa24.03■■□□□ 1.44
CCDC40-213ENST00000574933 NCBP3Q53F19 620 aaKnown RBP24.02■■□□□ 1.44
CCDC40-213ENST00000574933 TNS1Q9HBL0 1735 aaKnown RBP24.01■■□□□ 1.43
CCDC40-213ENST00000574933 MRC1P22897 1456 aa24.01■■□□□ 1.43
CCDC40-213ENST00000574933 BTAF1O14981 1849 aa24■■□□□ 1.43
CCDC40-213ENST00000574933 EP400Q96L91 3159 aa24■■□□□ 1.43
CCDC40-213ENST00000574933 APAF1O14727 1248 aa24■■□□□ 1.43
CCDC40-213ENST00000574933 CEMIPQ8WUJ3 1361 aa24■■□□□ 1.43
CCDC40-213ENST00000574933 ERVV-2B6SEH9 535 aa23.99■■□□□ 1.43
CCDC40-213ENST00000574933 RNMTO43148 476 aaKnown RBP23.98■■□□□ 1.43
CCDC40-213ENST00000574933 MPRIPQ6WCQ1 1025 aa23.98■■□□□ 1.43
CCDC40-213ENST00000574933 RIPK4P57078 832 aa23.97■■□□□ 1.43
CCDC40-213ENST00000574933 IL17REQ8NFR9 667 aa23.97■■□□□ 1.43
CCDC40-213ENST00000574933 LMOD3Q0VAK6 560 aa23.96■■□□□ 1.43
CCDC40-213ENST00000574933 NGEFQ8N5V2 710 aa23.96■■□□□ 1.43
CCDC40-213ENST00000574933 LGR6Q9HBX8 967 aa23.96■■□□□ 1.43
CCDC40-213ENST00000574933 RGPD3A6NKT7 1758 aaPredicted RBP23.94■■□□□ 1.42
CCDC40-213ENST00000574933 RGPD4Q7Z3J3 1758 aa23.94■■□□□ 1.42
CCDC40-213ENST00000574933 RTF1Q92541 710 aaKnown RBP23.94■■□□□ 1.42
CCDC40-213ENST00000574933 BCL11BQ9C0K0 894 aaPredicted RBP23.94■■□□□ 1.42
CCDC40-213ENST00000574933 TRIM35Q9UPQ4 493 aa23.94■■□□□ 1.42
CCDC40-213ENST00000574933 PRIM1P49642 420 aaKnown RBP23.93■■□□□ 1.42
CCDC40-213ENST00000574933 CCDC27Q2M243 656 aa23.93■■□□□ 1.42
CCDC40-213ENST00000574933 ACSBG1Q96GR2 724 aa23.93■■□□□ 1.42
CCDC40-213ENST00000574933 RRP7AQ9Y3A4 280 aaKnown RBP23.93■■□□□ 1.42
CCDC40-213ENST00000574933 PAPPAQ13219 1627 aa23.92■■□□□ 1.42
CCDC40-213ENST00000574933 KCNQ2O43526 872 aa23.92■■□□□ 1.42
CCDC40-213ENST00000574933 SLC52A2Q9HAB3 445 aa23.92■■□□□ 1.42
CCDC40-213ENST00000574933 TRIM37O94972 964 aa23.91■■□□□ 1.42
CCDC40-213ENST00000574933 LY75O60449 1722 aa23.9■■□□□ 1.42
CCDC40-213ENST00000574933 NEUROD2Q15784 382 aa23.9■■□□□ 1.42
CCDC40-213ENST00000574933 MCM10Q7L590 875 aa23.9■■□□□ 1.42
CCDC40-213ENST00000574933 CCDC125Q86Z20 511 aa23.9■■□□□ 1.42
CCDC40-213ENST00000574933 KDM3BQ7LBC6 1761 aa23.89■■□□□ 1.42
CCDC40-213ENST00000574933 UBR2Q8IWV8 1755 aa23.89■■□□□ 1.42
CCDC40-213ENST00000574933 CABP4P57796 275 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms