RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 TNS2Q63HR2 1409 aa22.76■■□□□ 1.23
NUP88-210ENST00000574867 FCHSD2O94868 740 aa22.76■■□□□ 1.23
NUP88-210ENST00000574867 RGS12O14924 1447 aa22.75■■□□□ 1.23
NUP88-210ENST00000574867 A0A0G2JS52 829 aa22.75■■□□□ 1.23
NUP88-210ENST00000574867 MYT1Q01538 1121 aa22.75■■□□□ 1.23
NUP88-210ENST00000574867 RSPH6AQ9H0K4 717 aa22.75■■□□□ 1.23
NUP88-210ENST00000574867 PNISRQ8TF01 805 aaKnown RBP22.74■■□□□ 1.23
NUP88-210ENST00000574867 PNNQ9H307 717 aaKnown RBP22.74■■□□□ 1.23
NUP88-210ENST00000574867 SEPT12Q8IYM1 358 aa22.73■■□□□ 1.23
NUP88-210ENST00000574867 SHANK3Q9BYB0 1731 aa22.73■■□□□ 1.23
NUP88-210ENST00000574867 DDB1Q16531 1140 aa22.72■■□□□ 1.23
NUP88-210ENST00000574867 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.72■■□□□ 1.232e-6■■□□□ 11.6
NUP88-210ENST00000574867 PRKAR2BP31323 418 aa22.72■■□□□ 1.23
NUP88-210ENST00000574867 BRWD3Q6RI45 1802 aa22.7■■□□□ 1.23
NUP88-210ENST00000574867 AMOTQ4VCS5 1084 aa22.7■■□□□ 1.23
NUP88-210ENST00000574867 ADAMTS8Q9UP79 889 aa22.7■■□□□ 1.23
NUP88-210ENST00000574867 EXOC5O00471 708 aa22.7■■□□□ 1.22
NUP88-210ENST00000574867 SPG7Q9UQ90 795 aa22.7■■□□□ 1.22
NUP88-210ENST00000574867 NEFMP07197 916 aa22.69■■□□□ 1.22
NUP88-210ENST00000574867 ZCRB1Q8TBF4 217 aaKnown RBP22.69■■□□□ 1.22
NUP88-210ENST00000574867 PLEKHO1Q53GL0 409 aaPredicted RBP22.69■■□□□ 1.22
NUP88-210ENST00000574867 PCDH11XQ9BZA7 1347 aa22.68■■□□□ 1.22
NUP88-210ENST00000574867 PCDH11YQ9BZA8 1340 aa22.68■■□□□ 1.22
NUP88-210ENST00000574867 PLEKHF1Q96S99 279 aa22.67■■□□□ 1.22
NUP88-210ENST00000574867 MAPK8IP3Q9UPT6 1336 aa22.66■■□□□ 1.22
NUP88-210ENST00000574867 PDE3BQ13370 1112 aa22.66■■□□□ 1.22
NUP88-210ENST00000574867 GAS2L2Q8NHY3 880 aa22.64■■□□□ 1.22
NUP88-210ENST00000574867 KRT27Q7Z3Y8 459 aa22.64■■□□□ 1.21
NUP88-210ENST00000574867 FAM9BQ8IZU0 186 aa22.64■■□□□ 1.21
NUP88-210ENST00000574867 RUNDC1Q96C34 613 aa22.64■■□□□ 1.21
NUP88-210ENST00000574867 PHACTR3Q96KR7 559 aa22.63■■□□□ 1.21
NUP88-210ENST00000574867 ZNF530Q6P9A1 599 aaPredicted RBP22.62■■□□□ 1.21
NUP88-210ENST00000574867 MTHFSDQ2M296 383 aaKnown RBP22.61■■□□□ 1.21
NUP88-210ENST00000574867 IFNL2Q8IZJ0 200 aa22.61■■□□□ 1.21
NUP88-210ENST00000574867 C1orf141Q5JVX7 400 aa22.61■■□□□ 1.21
NUP88-210ENST00000574867 CCDC146Q8IYE0 955 aa22.61■■□□□ 1.21
NUP88-210ENST00000574867 DDX54Q8TDD1 881 aaKnown RBP22.61■■□□□ 1.21
NUP88-210ENST00000574867 CYP27B1O15528 508 aa22.6■■□□□ 1.21
NUP88-210ENST00000574867 MARCH10Q8NA82 808 aaPredicted RBP22.6■■□□□ 1.21
NUP88-210ENST00000574867 BCL9O00512 1426 aa22.6■■□□□ 1.21
NUP88-210ENST00000574867 PHKG2P15735 406 aa22.59■■□□□ 1.21
NUP88-210ENST00000574867 AKAP4Q5JQC9 854 aa22.59■■□□□ 1.21
NUP88-210ENST00000574867 HSP90AB1P08238 724 aaKnown RBP22.58■■□□□ 1.21
NUP88-210ENST00000574867 MAP3K5Q99683 1374 aa22.58■■□□□ 1.21
NUP88-210ENST00000574867 DLG5Q8TDM6 1919 aa22.57■■□□□ 1.2
NUP88-210ENST00000574867 NFE2L2Q16236 605 aa22.57■■□□□ 1.2
NUP88-210ENST00000574867 NKX1-1Q15270 411 aaPredicted RBP22.56■■□□□ 1.2
NUP88-210ENST00000574867 ADAMTS7Q9UKP4 1686 aa22.56■■□□□ 1.2
NUP88-210ENST00000574867 DOT1LQ8TEK3 1739 aa22.55■■□□□ 1.2
NUP88-210ENST00000574867 VIRMAQ69YN4 1812 aaKnown RBP22.55■■□□□ 1.2
NUP88-210ENST00000574867 SCN11AQ9UI33 1791 aa22.55■■□□□ 1.2
NUP88-210ENST00000574867 TOGARAM1Q9Y4F4 1720 aa22.54■■□□□ 1.2
NUP88-210ENST00000574867 GNAT3A8MTJ3 354 aa22.54■■□□□ 1.2
NUP88-210ENST00000574867 FAM196AQ6ZSG2 479 aa22.54■■□□□ 1.2
NUP88-210ENST00000574867 TMPOP42166 694 aaKnown RBP22.53■■□□□ 1.2
NUP88-210ENST00000574867 DCAF5Q96JK2 942 aa22.53■■□□□ 1.2
NUP88-210ENST00000574867 KDM6AO15550 1401 aaPredicted RBP22.52■■□□□ 1.2
NUP88-210ENST00000574867 SBF2Q86WG5 1849 aa22.52■■□□□ 1.2
NUP88-210ENST00000574867 NHSQ6T4R5 1651 aa22.52■■□□□ 1.2
NUP88-210ENST00000574867 APAF1O14727 1248 aa22.52■■□□□ 1.2
NUP88-210ENST00000574867 HTATSF1O43719 755 aaKnown RBP22.52■■□□□ 1.2
NUP88-210ENST00000574867 LMOD3Q0VAK6 560 aa22.51■■□□□ 1.19
NUP88-210ENST00000574867 FAM182BQ5T319 152 aa22.51■■□□□ 1.19
NUP88-210ENST00000574867 RIPK4P57078 832 aa22.5■■□□□ 1.19
NUP88-210ENST00000574867 RTF1Q92541 710 aaKnown RBP22.5■■□□□ 1.19
NUP88-210ENST00000574867 MRC1P22897 1456 aa22.49■■□□□ 1.19
NUP88-210ENST00000574867 MPRIPQ6WCQ1 1025 aa22.49■■□□□ 1.19
NUP88-210ENST00000574867 NCBP3Q53F19 620 aaKnown RBP22.48■■□□□ 1.19
NUP88-210ENST00000574867 RRP7AQ9Y3A4 280 aaKnown RBP22.48■■□□□ 1.19
NUP88-210ENST00000574867 CEMIPQ8WUJ3 1361 aa22.48■■□□□ 1.19
NUP88-210ENST00000574867 ITGB4P16144 1822 aa22.48■■□□□ 1.19
NUP88-210ENST00000574867 RNMTO43148 476 aaKnown RBP22.47■■□□□ 1.19
NUP88-210ENST00000574867 NGEFQ8N5V2 710 aa22.47■■□□□ 1.19
NUP88-210ENST00000574867 ERVV-2B6SEH9 535 aa22.46■■□□□ 1.19
NUP88-210ENST00000574867 NEUROD2Q15784 382 aa22.46■■□□□ 1.19
NUP88-210ENST00000574867 SIPA1L3O60292 1781 aaPredicted RBP22.44■■□□□ 1.18
NUP88-210ENST00000574867 CCDC27Q2M243 656 aa22.44■■□□□ 1.18
NUP88-210ENST00000574867 IL17REQ8NFR9 667 aa22.44■■□□□ 1.18
NUP88-210ENST00000574867 ACSBG1Q96GR2 724 aa22.44■■□□□ 1.18
NUP88-210ENST00000574867 LGR6Q9HBX8 967 aa22.44■■□□□ 1.18
NUP88-210ENST00000574867 KAT6BQ8WYB5 2073 aa22.44■■□□□ 1.18
NUP88-210ENST00000574867 EP400Q96L91 3159 aa22.43■■□□□ 1.18
NUP88-210ENST00000574867 ILDR2Q71H61 639 aa22.43■■□□□ 1.18
NUP88-210ENST00000574867 MCM10Q7L590 875 aa22.43■■□□□ 1.18
NUP88-210ENST00000574867 TRIM35Q9UPQ4 493 aa22.43■■□□□ 1.18
NUP88-210ENST00000574867 TNS1Q9HBL0 1735 aaKnown RBP22.43■■□□□ 1.18
NUP88-210ENST00000574867 PRIM1P49642 420 aaKnown RBP22.42■■□□□ 1.18
NUP88-210ENST00000574867 SYTL4Q96C24 671 aaPredicted RBP22.42■■□□□ 1.18
NUP88-210ENST00000574867 SLC52A2Q9HAB3 445 aa22.42■■□□□ 1.18
NUP88-210ENST00000574867 TMOD3Q9NYL9 352 aa22.42■■□□□ 1.18
NUP88-210ENST00000574867 BTAF1O14981 1849 aa22.42■■□□□ 1.18
NUP88-210ENST00000574867 CABP4P57796 275 aa22.42■■□□□ 1.18
NUP88-210ENST00000574867 TEFQ10587 303 aa22.42■■□□□ 1.18
NUP88-210ENST00000574867 BCL11BQ9C0K0 894 aaPredicted RBP22.42■■□□□ 1.18
NUP88-210ENST00000574867 DCTN1Q14203 1278 aa22.41■■□□□ 1.18
NUP88-210ENST00000574867 KCNQ2O43526 872 aa22.39■■□□□ 1.17
NUP88-210ENST00000574867 TRIM37O94972 964 aa22.39■■□□□ 1.17
NUP88-210ENST00000574867 CALD1Q05682 793 aaKnown RBP22.38■■□□□ 1.17
NUP88-210ENST00000574867 PAPPAQ13219 1627 aa22.38■■□□□ 1.17
NUP88-210ENST00000574867 WWC1Q8IX03 1113 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms