RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CDK11BP21127 795 aaKnown RBP9.27□□□□□ -0.93
VPS53-212ENST00000572259 SKOR1P84550 965 aa9.27□□□□□ -0.93
VPS53-212ENST00000572259 RC3H1Q5TC82 1133 aaKnown RBP9.27□□□□□ -0.93
VPS53-212ENST00000572259 CDV3Q9UKY7 258 aaKnown RBP9.27□□□□□ -0.93
VPS53-212ENST00000572259 CDK11AQ9UQ88 783 aaPredicted RBP9.27□□□□□ -0.93
VPS53-212ENST00000572259 DISP1Q96F81 1524 aa9.26□□□□□ -0.93
VPS53-212ENST00000572259 SKIP12755 728 aa9.26□□□□□ -0.93
VPS53-212ENST00000572259 HSP90B1P14625 803 aaKnown RBP9.26□□□□□ -0.93
VPS53-212ENST00000572259 LMOD1P29536 600 aaPredicted RBP9.26□□□□□ -0.93
VPS53-212ENST00000572259 RNF135Q8IUD6 432 aa9.26□□□□□ -0.93
VPS53-212ENST00000572259 KIF21BO75037 1637 aa9.26□□□□□ -0.93
VPS53-212ENST00000572259 KIAA0556O60303 1618 aa9.25□□□□□ -0.93
VPS53-212ENST00000572259 ATP9BO43861 1147 aa9.25□□□□□ -0.93
VPS53-212ENST00000572259 NBPF20Q3BBV1 942 aa9.25□□□□□ -0.93
VPS53-212ENST00000572259 TBC1D9Q6ZT07 1266 aa9.25□□□□□ -0.93
VPS53-212ENST00000572259 TRMT44Q8IYL2 757 aaKnown RBP9.25□□□□□ -0.93
VPS53-212ENST00000572259 UCN2Q96RP3 112 aa9.25□□□□□ -0.93
VPS53-212ENST00000572259 C1QTNF2Q9BXJ5 285 aa9.25□□□□□ -0.93
VPS53-212ENST00000572259 ACIN1Q9UKV3 1341 aaKnown RBP9.25□□□□□ -0.93
VPS53-212ENST00000572259 UACAQ9BZF9 1416 aa9.24□□□□□ -0.93
VPS53-212ENST00000572259 ARID5BQ14865 1188 aa9.24□□□□□ -0.93
VPS53-212ENST00000572259 RNF20Q5VTR2 975 aa9.24□□□□□ -0.93
VPS53-212ENST00000572259 NFATC2IPQ8NCF5 419 aa9.24□□□□□ -0.93
VPS53-212ENST00000572259 RGS22Q8NE09 1264 aa9.24□□□□□ -0.93
VPS53-212ENST00000572259 PIK3CDO00329 1044 aa9.23□□□□□ -0.93
VPS53-212ENST00000572259 GIGYF1O75420 1035 aaPredicted RBP9.23□□□□□ -0.93
VPS53-212ENST00000572259 CFAP70Q5T0N1 1121 aa9.23□□□□□ -0.93
VPS53-212ENST00000572259 SPRYD7Q5W111 196 aa9.23□□□□□ -0.93
VPS53-212ENST00000572259 VASH1Q7L8A9 365 aaPredicted RBP9.23□□□□□ -0.93
VPS53-212ENST00000572259 EMID1Q96A84 441 aaPredicted RBP9.23□□□□□ -0.93
VPS53-212ENST00000572259 ADCY10Q96PN6 1610 aa9.23□□□□□ -0.93
VPS53-212ENST00000572259 UHRF1BP1LA0JNW5 1464 aa9.22□□□□□ -0.93
VPS53-212ENST00000572259 PPP1R15AO75807 674 aaPredicted RBP9.22□□□□□ -0.93
VPS53-212ENST00000572259 FAM69CQ0P6D2 419 aa9.22□□□□□ -0.93
VPS53-212ENST00000572259 PRKD2Q9BZL6 878 aa9.22□□□□□ -0.93
VPS53-212ENST00000572259 ABCC2Q92887 1545 aa9.21□□□□□ -0.93
VPS53-212ENST00000572259 ZNF697Q5TEC3 545 aa9.21□□□□□ -0.94
VPS53-212ENST00000572259 PHTF2Q8N3S3 785 aa9.21□□□□□ -0.94
VPS53-212ENST00000572259 PBXIP1Q96AQ6 731 aa9.21□□□□□ -0.94
VPS53-212ENST00000572259 KCTD15Q96SI1 283 aaPredicted RBP9.21□□□□□ -0.94
VPS53-212ENST00000572259 MAFBQ9Y5Q3 323 aaPredicted RBP9.21□□□□□ -0.94
VPS53-212ENST00000572259 MAPKBP1O60336 1514 aa9.21□□□□□ -0.94
VPS53-212ENST00000572259 WNT7AO00755 349 aa9.2□□□□□ -0.94
VPS53-212ENST00000572259 RAB15P59190 212 aa9.2□□□□□ -0.94
VPS53-212ENST00000572259 MAP7D1Q3KQU3 841 aa9.2□□□□□ -0.94
VPS53-212ENST00000572259 TMCO4Q5TGY1 634 aa9.2□□□□□ -0.94
VPS53-212ENST00000572259 ZNF598Q86UK7 904 aaKnown RBP9.2□□□□□ -0.94
VPS53-212ENST00000572259 PLPP7Q8NBV4 271 aa9.2□□□□□ -0.94
VPS53-212ENST00000572259 PLB1Q6P1J6 1458 aa9.2□□□□□ -0.94
VPS53-212ENST00000572259 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.19□□□□□ -0.94
VPS53-212ENST00000572259 FOXC1Q12948 553 aa9.19□□□□□ -0.94
VPS53-212ENST00000572259 CCDC125Q86Z20 511 aa9.19□□□□□ -0.94
VPS53-212ENST00000572259 DEPDC4Q8N2C3 294 aa9.19□□□□□ -0.94
VPS53-212ENST00000572259 VRTNQ9H8Y1 702 aa9.19□□□□□ -0.94
VPS53-212ENST00000572259 DOLKQ9UPQ8 538 aa9.19□□□□□ -0.94
VPS53-212ENST00000572259 MAP4K5Q9Y4K4 846 aa9.19□□□□□ -0.94
VPS53-212ENST00000572259 V9GY48 417 aaPredicted RBP9.19□□□□□ -0.94
VPS53-212ENST00000572259 USP17L3A6NCW0 530 aa9.18□□□□□ -0.94
VPS53-212ENST00000572259 USP17L4A6NCW7 530 aa9.18□□□□□ -0.94
VPS53-212ENST00000572259 USP17L5A8MUK1 530 aa9.18□□□□□ -0.94
VPS53-212ENST00000572259 LZTS3O60299 673 aaPredicted RBP9.18□□□□□ -0.94
VPS53-212ENST00000572259 CDCA8Q53HL2 280 aa9.18□□□□□ -0.94
VPS53-212ENST00000572259 ABCC10Q5T3U5 1492 aa9.18□□□□□ -0.94
VPS53-212ENST00000572259 USP17L2Q6R6M4 530 aa9.18□□□□□ -0.94
VPS53-212ENST00000572259 USP17L1Q7RTZ2 530 aa9.18□□□□□ -0.94
VPS53-212ENST00000572259 SEPT12Q8IYM1 358 aa9.18□□□□□ -0.94
VPS53-212ENST00000572259 MRGPRX2Q96LB1 330 aa9.18□□□□□ -0.94
VPS53-212ENST00000572259 EFCAB5A4FU69 1503 aa9.17□□□□□ -0.94
VPS53-212ENST00000572259 KDM5BQ9UGL1 1544 aa9.17□□□□□ -0.94
VPS53-212ENST00000572259 EML3Q32P44 896 aa9.17□□□□□ -0.94
VPS53-212ENST00000572259 PUS7Q96PZ0 661 aaKnown RBP9.17□□□□□ -0.94
VPS53-212ENST00000572259 CDK15Q96Q40 435 aa9.17□□□□□ -0.94
VPS53-212ENST00000572259 TLL2Q9Y6L7 1015 aa9.17□□□□□ -0.94
VPS53-212ENST00000572259 KIF13AQ9H1H9 1805 aa9.17□□□□□ -0.94
VPS53-212ENST00000572259 SAMD9Q5K651 1589 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 ASXL2Q76L83 1435 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 ESPNB1AK53 854 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 SIAH2O43255 324 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 NCOA4Q13772 614 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 TSGA10IPQ3SY00 556 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 OXLD1Q5BKU9 147 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 PLEKHM2Q8IWE5 1019 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 MPNDQ8N594 471 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 TRIM52Q96A61 297 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 ESF1Q9H501 851 aaKnown RBP9.16□□□□□ -0.94
VPS53-212ENST00000572259 MTMR7Q9Y216 660 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 PCDHB11Q9Y5F2 797 aa9.16□□□□□ -0.94
VPS53-212ENST00000572259 FSHRP23945 695 aa9.15□□□□□ -0.94
VPS53-212ENST00000572259 CCDC85AQ96PX6 553 aaPredicted RBP9.15□□□□□ -0.94
VPS53-212ENST00000572259 MKRN1Q9UHC7 482 aaKnown RBP9.15□□□□□ -0.94
VPS53-212ENST00000572259 ABCA8O94911 1581 aa9.15□□□□□ -0.95
VPS53-212ENST00000572259 ZCCHC11Q5TAX3 1644 aaKnown RBP9.14□□□□□ -0.95
VPS53-212ENST00000572259 ADH1CP00326 375 aa9.14□□□□□ -0.95
VPS53-212ENST00000572259 DHX9Q08211 1270 aaKnown RBP9.14□□□□□ -0.95
VPS53-212ENST00000572259 INTS6LQ5JSJ4 861 aaKnown RBP9.14□□□□□ -0.95
VPS53-212ENST00000572259 AEBP1Q8IUX7 1158 aa9.14□□□□□ -0.95
VPS53-212ENST00000572259 SIRT1Q96EB6 747 aa9.14□□□□□ -0.95
VPS53-212ENST00000572259 CHIC2Q9UKJ5 165 aa9.14□□□□□ -0.95
VPS53-212ENST00000572259 NOD1Q9Y239 953 aa9.14□□□□□ -0.95
VPS53-212ENST00000572259 TSPOAP1O95153 1857 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms