RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-222	ENST00000570139	CTH	P32929	405 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	ATP1A2	P50993	1020 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	FAM69C	Q0P6D2	419 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	NBPF14	Q5TI25	921 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	DMRTA1	Q5VZB9	504 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	BRICD5	Q6PL45	260 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	BLOC1S3	Q6QNY0	202 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	PLPP7	Q8NBV4	271 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	SIRT1	Q96EB6	747 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	ERBB3	P21860	1342 aa		10.55	□□□□□ -0.72
CNOT1-222	ENST00000570139	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.54	□□□□□ -0.72
CNOT1-222	ENST00000570139	PCDHB9	Q9Y5E1	797 aa		10.54	□□□□□ -0.72
CNOT1-222	ENST00000570139	MARS	P56192	900 aa	Known RBP	10.53	□□□□□ -0.72
CNOT1-222	ENST00000570139	C1orf216	Q8TAB5	229 aa		10.53	□□□□□ -0.72
CNOT1-222	ENST00000570139	RAPGEF6	Q8TEU7	1601 aa		10.52	□□□□□ -0.73
CNOT1-222	ENST00000570139	NR1I2	O75469	434 aa		10.52	□□□□□ -0.73
CNOT1-222	ENST00000570139	OGFOD1	Q8N543	542 aa		10.52	□□□□□ -0.73
CNOT1-222	ENST00000570139	MRPL50	Q8N5N7	158 aa	Known RBP	10.52	□□□□□ -0.73
CNOT1-222	ENST00000570139	CCNYL3	P0C7X3	344 aa		10.51	□□□□□ -0.73
CNOT1-222	ENST00000570139	SERPINB4	P48594	390 aa		10.51	□□□□□ -0.73
CNOT1-222	ENST00000570139	DPYD	Q12882	1025 aa		10.51	□□□□□ -0.73
CNOT1-222	ENST00000570139	PHTF2	Q8N3S3	785 aa		10.51	□□□□□ -0.73
CNOT1-222	ENST00000570139	MRRF	Q96E11	262 aa	Known RBP	10.51	□□□□□ -0.73
CNOT1-222	ENST00000570139	BCL2L13	Q9BXK5	485 aa		10.51	□□□□□ -0.73
CNOT1-222	ENST00000570139	SLAIN2	Q9P270	581 aa		10.51	□□□□□ -0.73
CNOT1-222	ENST00000570139	BIN2	Q9UBW5	565 aa	Predicted RBP	10.51	□□□□□ -0.73
CNOT1-222	ENST00000570139	NOD1	Q9Y239	953 aa		10.51	□□□□□ -0.73
CNOT1-222	ENST00000570139	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.5	□□□□□ -0.73
CNOT1-222	ENST00000570139	VARS2	Q5ST30	1063 aa	Known RBP	10.5	□□□□□ -0.73
CNOT1-222	ENST00000570139	POTEE	Q6S8J3	1075 aa		10.5	□□□□□ -0.73
CNOT1-222	ENST00000570139	IGSF5	Q9NSI5	407 aa		10.5	□□□□□ -0.73
CNOT1-222	ENST00000570139	USP35	Q9P2H5	1018 aa		10.5	□□□□□ -0.73
CNOT1-222	ENST00000570139	CHIC2	Q9UKJ5	165 aa		10.5	□□□□□ -0.73
CNOT1-222	ENST00000570139	RBM19	Q9Y4C8	960 aa	Known RBP	10.5	□□□□□ -0.73
CNOT1-222	ENST00000570139	SCUBE3	Q8IX30	993 aa		10.49	□□□□□ -0.73
CNOT1-222	ENST00000570139	LARGE2	Q8N3Y3	721 aa		10.49	□□□□□ -0.73
CNOT1-222	ENST00000570139	DNAAF2	Q9NVR5	837 aa	Known RBP	10.49	□□□□□ -0.73
CNOT1-222	ENST00000570139	AXIN2	Q9Y2T1	843 aa		10.49	□□□□□ -0.73
CNOT1-222	ENST00000570139	PRG4	Q92954	1404 aa	Predicted RBP	10.49	□□□□□ -0.73
CNOT1-222	ENST00000570139	LRRC9	Q6ZRR7	1453 aa		10.49	□□□□□ -0.73
CNOT1-222	ENST00000570139	EHBP1L1	Q8N3D4	1523 aa		10.48	□□□□□ -0.73
CNOT1-222	ENST00000570139	LRRIQ1	Q96JM4	1722 aa		10.48	□□□□□ -0.73
CNOT1-222	ENST00000570139	ZNF16	P17020	682 aa	Predicted RBP	10.48	□□□□□ -0.73
CNOT1-222	ENST00000570139	THAP11	Q96EK4	314 aa		10.48	□□□□□ -0.73
CNOT1-222	ENST00000570139	ZNF594	Q96JF6	807 aa	Predicted RBP	10.48	□□□□□ -0.73
CNOT1-222	ENST00000570139	EVA1B	Q9NVM1	165 aa		10.48	□□□□□ -0.73
CNOT1-222	ENST00000570139	EGFL7	Q9UHF1	273 aa		10.48	□□□□□ -0.73
CNOT1-222	ENST00000570139	TK2	O00142	265 aa		10.47	□□□□□ -0.73
CNOT1-222	ENST00000570139	KCNH2	Q12809	1159 aa		10.47	□□□□□ -0.73
CNOT1-222	ENST00000570139	MSS51	Q4VC12	460 aa		10.47	□□□□□ -0.73
CNOT1-222	ENST00000570139	ARHGAP9	Q9BRR9	750 aa		10.47	□□□□□ -0.73
CNOT1-222	ENST00000570139	PCDHB3	Q9Y5E6	796 aa		10.47	□□□□□ -0.73
CNOT1-222	ENST00000570139	ABCA8	O94911	1581 aa		10.47	□□□□□ -0.73
CNOT1-222	ENST00000570139	ZNF326	Q5BKZ1	582 aa	Known RBP	10.46	□□□□□ -0.73
CNOT1-222	ENST00000570139	TRAF7	Q6Q0C0	670 aa		10.46	□□□□□ -0.73
CNOT1-222	ENST00000570139	NUDT12	Q9BQG2	462 aa		10.46	□□□□□ -0.73
CNOT1-222	ENST00000570139	KIAA1522	Q9P206	1035 aa	Predicted RBP	10.46	□□□□□ -0.73
CNOT1-222	ENST00000570139	EPRS	P07814	1512 aa	Known RBP	10.46	□□□□□ -0.74
CNOT1-222	ENST00000570139	SUPT6H	Q7KZ85	1726 aa	Known RBP	10.45	□□□□□ -0.74
CNOT1-222	ENST00000570139	PPP4C	P60510	307 aa		10.45	□□□□□ -0.74
CNOT1-222	ENST00000570139	CLDN10	P78369	228 aa		10.45	□□□□□ -0.74
CNOT1-222	ENST00000570139	ZBTB33	Q86T24	672 aa		10.45	□□□□□ -0.74
CNOT1-222	ENST00000570139	SIX5	Q8N196	739 aa		10.45	□□□□□ -0.74
CNOT1-222	ENST00000570139	ADAM32	Q8TC27	787 aa		10.45	□□□□□ -0.74
CNOT1-222	ENST00000570139	GIPC2	Q8TF65	315 aa		10.45	□□□□□ -0.74
CNOT1-222	ENST00000570139	BCL11A	Q9H165	835 aa		10.45	□□□□□ -0.74
CNOT1-222	ENST00000570139	DXO	O77932	396 aa	Known RBP	10.44	□□□□□ -0.74
CNOT1-222	ENST00000570139	SEC13	P55735	322 aa		10.44	□□□□□ -0.74
CNOT1-222	ENST00000570139	ANKK1	Q8NFD2	765 aa		10.44	□□□□□ -0.74
CNOT1-222	ENST00000570139	OCSTAMP	Q9BR26	566 aa		10.44	□□□□□ -0.74
CNOT1-222	ENST00000570139	DOLK	Q9UPQ8	538 aa		10.44	□□□□□ -0.74
CNOT1-222	ENST00000570139	NUP153	P49790	1475 aa	Known RBP	10.43	□□□□□ -0.74
CNOT1-222	ENST00000570139	ANKRD33B	A6NCL7	494 aa		10.43	□□□□□ -0.74
CNOT1-222	ENST00000570139	PTPRG	P23470	1445 aa		10.42	□□□□□ -0.74
CNOT1-222	ENST00000570139	DZIP3	Q86Y13	1208 aa	Known RBP	10.42	□□□□□ -0.74
CNOT1-222	ENST00000570139	ZNF687	Q8N1G0	1237 aa		10.42	□□□□□ -0.74
CNOT1-222	ENST00000570139	CXXC1	Q9P0U4	656 aa	Predicted RBP	10.42	□□□□□ -0.74
CNOT1-222	ENST00000570139	UHRF1BP1L	A0JNW5	1464 aa		10.42	□□□□□ -0.74
CNOT1-222	ENST00000570139	MTUS2	Q5JR59	1369 aa		10.41	□□□□□ -0.74
CNOT1-222	ENST00000570139	MMP16	P51512	607 aa		10.41	□□□□□ -0.74
CNOT1-222	ENST00000570139	APLP1	P51693	650 aa		10.41	□□□□□ -0.74
CNOT1-222	ENST00000570139	RNF20	Q5VTR2	975 aa		10.41	□□□□□ -0.74
CNOT1-222	ENST00000570139	TAS1R3	Q7RTX0	852 aa		10.41	□□□□□ -0.74
CNOT1-222	ENST00000570139	NPAS4	Q8IUM7	802 aa		10.41	□□□□□ -0.74
CNOT1-222	ENST00000570139	HPS5	Q9UPZ3	1129 aa		10.41	□□□□□ -0.74
CNOT1-222	ENST00000570139	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.41	□□□□□ -0.74
CNOT1-222	ENST00000570139	ABCC2	Q92887	1545 aa		10.41	□□□□□ -0.74
CNOT1-222	ENST00000570139	ADCY10	Q96PN6	1610 aa		10.4	□□□□□ -0.74
CNOT1-222	ENST00000570139		H3BRB1	525 aa		10.4	□□□□□ -0.74
CNOT1-222	ENST00000570139	PRMT3	O60678	531 aa		10.4	□□□□□ -0.74
CNOT1-222	ENST00000570139	ABL1	P00519	1130 aa		10.4	□□□□□ -0.74
CNOT1-222	ENST00000570139	GTF2I	P78347	998 aa		10.4	□□□□□ -0.74
CNOT1-222	ENST00000570139	NOM1	Q5C9Z4	860 aa	Known RBP	10.4	□□□□□ -0.74
CNOT1-222	ENST00000570139	GLYCTK	Q8IVS8	523 aa		10.4	□□□□□ -0.74
CNOT1-222	ENST00000570139	TUT1	Q9H6E5	874 aa	Known RBP	10.4	□□□□□ -0.74
CNOT1-222	ENST00000570139	PLB1	Q6P1J6	1458 aa		10.4	□□□□□ -0.74
CNOT1-222	ENST00000570139	UACA	Q9BZF9	1416 aa		10.4	□□□□□ -0.75
CNOT1-222	ENST00000570139	SOWAHB	A6NEL2	793 aa		10.39	□□□□□ -0.75
CNOT1-222	ENST00000570139	GOLGA8CP	A6NN73	597 aa		10.39	□□□□□ -0.75
CNOT1-222	ENST00000570139	TCF3	P15923	654 aa		10.39	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 84 ms