RNA–Protein interactions for RNA: ENST00000569518.5

VCPKMT-205, Transcript of valosin containing protein lysine methyltransferase, human

TSL 2

Gene VCPKMT, Length 1,827 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VCPKMT-205	ENST00000569518	ERBB3	P21860	1342 aa		29.07	■■■□□ 2.24
VCPKMT-205	ENST00000569518	ABCA3	Q99758	1704 aa		29.07	■■■□□ 2.24
VCPKMT-205	ENST00000569518	CHL1	O00533	1208 aa		29.06	■■■□□ 2.24
VCPKMT-205	ENST00000569518	SSH1	Q8WYL5	1049 aa		29.06	■■■□□ 2.24
VCPKMT-205	ENST00000569518	ZNF428	Q96B54	188 aa		29.06	■■■□□ 2.24
VCPKMT-205	ENST00000569518	MAP3K5	Q99683	1374 aa		29.04	■■■□□ 2.24
VCPKMT-205	ENST00000569518	CANX	P27824	592 aa	Known RBP	29.04	■■■□□ 2.24
VCPKMT-205	ENST00000569518	FRAT1	Q92837	279 aa	Predicted RBP	29.04	■■■□□ 2.24
VCPKMT-205	ENST00000569518	FAM208A	Q9UK61	1670 aa	Known RBP	29.03	■■■□□ 2.24
VCPKMT-205	ENST00000569518	ALDH1L2	Q3SY69	923 aa		29.03	■■■□□ 2.24
VCPKMT-205	ENST00000569518	RTF1	Q92541	710 aa	Known RBP	29.03	■■■□□ 2.24
VCPKMT-205	ENST00000569518	SMC4	Q9NTJ3	1288 aa		29.03	■■■□□ 2.24
VCPKMT-205	ENST00000569518	GNAT3	A8MTJ3	354 aa		29.02	■■■□□ 2.24
VCPKMT-205	ENST00000569518	KIAA0232	Q92628	1395 aa		29.02	■■■□□ 2.24
VCPKMT-205	ENST00000569518	VAMP4	O75379	141 aa		29.01	■■■□□ 2.24
VCPKMT-205	ENST00000569518	TSPYL6	Q8N831	410 aa		29.01	■■■□□ 2.23
VCPKMT-205	ENST00000569518	BRPF1	P55201	1214 aa	Predicted RBP	28.99	■■■□□ 2.23
VCPKMT-205	ENST00000569518	PANK1	Q8TE04	598 aa		28.99	■■■□□ 2.23
VCPKMT-205	ENST00000569518	ROBO1	Q9Y6N7	1651 aa		28.98	■■■□□ 2.23
VCPKMT-205	ENST00000569518	C8orf58	Q8NAV2	365 aa		28.98	■■■□□ 2.23
VCPKMT-205	ENST00000569518	ZKSCAN2	Q63HK3	967 aa		28.97	■■■□□ 2.23
VCPKMT-205	ENST00000569518	RLBP1	P12271	317 aa		28.96	■■■□□ 2.23
VCPKMT-205	ENST00000569518	TWISTNB	Q3B726	338 aa	Predicted RBP	28.96	■■■□□ 2.23
VCPKMT-205	ENST00000569518	TNN	Q9UQP3	1299 aa		28.96	■■■□□ 2.23
VCPKMT-205	ENST00000569518	IL17RE	Q8NFR9	667 aa		28.95	■■■□□ 2.23
VCPKMT-205	ENST00000569518	AHDC1	Q5TGY3	1603 aa	Predicted RBP	28.95	■■■□□ 2.22
VCPKMT-205	ENST00000569518	KIF16B	Q96L93	1317 aa		28.95	■■■□□ 2.22
VCPKMT-205	ENST00000569518	CHRNA2	Q15822	529 aa		28.94	■■■□□ 2.22
VCPKMT-205	ENST00000569518	CEMIP	Q8WUJ3	1361 aa		28.94	■■■□□ 2.22
VCPKMT-205	ENST00000569518	AMOT	Q4VCS5	1084 aa		28.93	■■■□□ 2.22
VCPKMT-205	ENST00000569518	PLEKHO1	Q53GL0	409 aa	Predicted RBP	28.92	■■■□□ 2.22
VCPKMT-205	ENST00000569518	COG6	Q9Y2V7	657 aa		28.92	■■■□□ 2.22
VCPKMT-205	ENST00000569518	TRIM27	P14373	513 aa		28.91	■■■□□ 2.22
VCPKMT-205	ENST00000569518	NOB1	Q9ULX3	412 aa	Known RBP	28.91	■■■□□ 2.22
VCPKMT-205	ENST00000569518	ELL2	O00472	640 aa	Predicted RBP	28.9	■■■□□ 2.22
VCPKMT-205	ENST00000569518	MS4A1	P11836	297 aa		28.9	■■■□□ 2.22
VCPKMT-205	ENST00000569518	ATF7IP	Q6VMQ6	1270 aa		28.9	■■■□□ 2.22
VCPKMT-205	ENST00000569518	MRPL50	Q8N5N7	158 aa	Known RBP	28.9	■■■□□ 2.22
VCPKMT-205	ENST00000569518	PLEKHG2	Q9H7P9	1386 aa		28.89	■■■□□ 2.22
VCPKMT-205	ENST00000569518	DZIP1L	Q8IYY4	767 aa	Known RBP	28.89	■■■□□ 2.22
VCPKMT-205	ENST00000569518	TSPYL4	Q9UJ04	414 aa		28.89	■■■□□ 2.22
VCPKMT-205	ENST00000569518	VIRMA	Q69YN4	1812 aa	Known RBP	28.88	■■■□□ 2.21
VCPKMT-205	ENST00000569518	AKAP4	Q5JQC9	854 aa		28.88	■■■□□ 2.21
VCPKMT-205	ENST00000569518	ZNF530	Q6P9A1	599 aa	Predicted RBP	28.88	■■■□□ 2.21
VCPKMT-205	ENST00000569518	BABAM1	Q9NWV8	329 aa		28.88	■■■□□ 2.21
VCPKMT-205	ENST00000569518	NLRP2	Q9NX02	1062 aa		28.88	■■■□□ 2.21
VCPKMT-205	ENST00000569518	MIS18A	Q9NYP9	233 aa		28.88	■■■□□ 2.21
VCPKMT-205	ENST00000569518	ADAMTS7	Q9UKP4	1686 aa		28.88	■■■□□ 2.21
VCPKMT-205	ENST00000569518	KRT24	Q2M2I5	525 aa		28.87	■■■□□ 2.21
VCPKMT-205	ENST00000569518	CLUAP1	Q96AJ1	413 aa		28.87	■■■□□ 2.21
VCPKMT-205	ENST00000569518	PRDM11	Q9NQV5	511 aa		28.87	■■■□□ 2.21
VCPKMT-205	ENST00000569518	OVOS2	A0A0G2JMS6	1433 aa		28.87	■■■□□ 2.21
VCPKMT-205	ENST00000569518	IPO8	O15397	1037 aa	Known RBP	28.87	■■■□□ 2.21
VCPKMT-205	ENST00000569518	AAMP	Q13685	434 aa		28.86	■■■□□ 2.21
VCPKMT-205	ENST00000569518	KDM2B	Q8NHM5	1336 aa		28.86	■■■□□ 2.21
VCPKMT-205	ENST00000569518	MEGF6	O75095	1541 aa		28.85	■■■□□ 2.21
VCPKMT-205	ENST00000569518	HAP1	P54257	671 aa	Predicted RBP	28.85	■■■□□ 2.21
VCPKMT-205	ENST00000569518	MVP	Q14764	893 aa	Known RBP	28.85	■■■□□ 2.21
VCPKMT-205	ENST00000569518	FTSJ3	Q8IY81	847 aa	Known RBP	28.85	■■■□□ 2.21
VCPKMT-205	ENST00000569518	COL22A1	Q8NFW1	1626 aa	Predicted RBP	28.84	■■■□□ 2.21
VCPKMT-205	ENST00000569518	COL5A2	P05997	1499 aa	Predicted RBP	28.84	■■■□□ 2.21
VCPKMT-205	ENST00000569518	TAF7	Q15545	349 aa	Predicted RBP	28.84	■■■□□ 2.21
VCPKMT-205	ENST00000569518	ARHGAP45	Q92619	1136 aa		28.84	■■■□□ 2.21
VCPKMT-205	ENST00000569518	CSB-PGBD3	P0DP91	1061 aa		28.83	■■■□□ 2.21
VCPKMT-205	ENST00000569518	PKD1L3	Q7Z443	1732 aa		28.83	■■■□□ 2.21
VCPKMT-205	ENST00000569518	KDM3B	Q7LBC6	1761 aa		28.83	■■■□□ 2.21
VCPKMT-205	ENST00000569518	RAPGEF4	Q8WZA2	1011 aa		28.82	■■■□□ 2.2
VCPKMT-205	ENST00000569518	LGR6	Q9HBX8	967 aa		28.82	■■■□□ 2.2
VCPKMT-205	ENST00000569518	TSHZ2	Q9NRE2	1034 aa		28.81	■■■□□ 2.2
VCPKMT-205	ENST00000569518	WDR17	Q8IZU2	1322 aa		28.81	■■■□□ 2.2
VCPKMT-205	ENST00000569518	C1orf141	Q5JVX7	400 aa		28.8	■■■□□ 2.2
VCPKMT-205	ENST00000569518	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	28.8	■■■□□ 2.2
VCPKMT-205	ENST00000569518	SIPA1L3	O60292	1781 aa	Predicted RBP	28.8	■■■□□ 2.2
VCPKMT-205	ENST00000569518	TCERG1	O14776	1098 aa	Known RBP	28.78	■■■□□ 2.2
VCPKMT-205	ENST00000569518	TAT	P17735	454 aa	Predicted RBP	28.78	■■■□□ 2.2
VCPKMT-205	ENST00000569518	CENPQ	Q7L2Z9	268 aa	Predicted RBP	28.78	■■■□□ 2.2
VCPKMT-205	ENST00000569518	RNMT	O43148	476 aa	Known RBP	28.77	■■■□□ 2.2
VCPKMT-205	ENST00000569518	MPRIP	Q6WCQ1	1025 aa		28.77	■■■□□ 2.2
VCPKMT-205	ENST00000569518	COL16A1	Q07092	1604 aa	Predicted RBP	28.76	■■■□□ 2.19
VCPKMT-205	ENST00000569518	SOS1	Q07889	1333 aa	Predicted RBP	28.76	■■■□□ 2.19
VCPKMT-205	ENST00000569518	PARP4	Q9UKK3	1724 aa	Known RBP	28.76	■■■□□ 2.19
VCPKMT-205	ENST00000569518	TMEM57	Q8N5G2	664 aa		28.76	■■■□□ 2.19
VCPKMT-205	ENST00000569518	SCN11A	Q9UI33	1791 aa		28.76	■■■□□ 2.19
VCPKMT-205	ENST00000569518	ABCC4	O15439	1325 aa		28.75	■■■□□ 2.19
VCPKMT-205	ENST00000569518	DDX19B	Q9UMR2	479 aa		28.74	■■■□□ 2.19
VCPKMT-205	ENST00000569518	PHLPP1	O60346	1717 aa		28.74	■■■□□ 2.19
VCPKMT-205	ENST00000569518	SPG7	Q9UQ90	795 aa		28.73	■■■□□ 2.19
VCPKMT-205	ENST00000569518	ITPRIP	Q8IWB1	547 aa		28.73	■■■□□ 2.19
VCPKMT-205	ENST00000569518	RGS12	O14924	1447 aa		28.72	■■■□□ 2.19
VCPKMT-205	ENST00000569518	KDM6A	O15550	1401 aa	Predicted RBP	28.72	■■■□□ 2.19
VCPKMT-205	ENST00000569518	COL14A1	Q05707	1796 aa	Known RBP	28.71	■■■□□ 2.19
VCPKMT-205	ENST00000569518	TEF	Q10587	303 aa		28.71	■■■□□ 2.19
VCPKMT-205	ENST00000569518	API5	Q9BZZ5	524 aa	Known RBP	28.71	■■■□□ 2.19
VCPKMT-205	ENST00000569518	PHKG2	P15735	406 aa		28.7	■■■□□ 2.18
VCPKMT-205	ENST00000569518	PCDHB15	Q9Y5E8	787 aa		28.7	■■■□□ 2.18
VCPKMT-205	ENST00000569518	TOM1L2	Q6ZVM7	507 aa		28.69	■■■□□ 2.18
VCPKMT-205	ENST00000569518	CARD10	Q9BWT7	1032 aa		28.69	■■■□□ 2.18
VCPKMT-205	ENST00000569518	CACNA1F	O60840	1977 aa		28.68	■■■□□ 2.18
VCPKMT-205	ENST00000569518	IGHD	P01880	384 aa		28.68	■■■□□ 2.18
VCPKMT-205	ENST00000569518	EIF4A1	P60842	406 aa	Known RBP	28.67	■■■□□ 2.18

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms