RNA–Protein interactions for RNA: ENST00000568676.5

HERPUD1-215, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 571 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-215ENST00000568676 TFCP2L1Q9NZI6 479 aa22.16■■□□□ 1.14
HERPUD1-215ENST00000568676 COL24A1Q17RW2 1714 aa22.15■■□□□ 1.14
HERPUD1-215ENST00000568676 PNPLA7Q6ZV29 1317 aa22.15■■□□□ 1.14
HERPUD1-215ENST00000568676 PRIM1P49642 420 aaKnown RBP22.15■■□□□ 1.14
HERPUD1-215ENST00000568676 GPR162Q16538 588 aa22.14■■□□□ 1.13
HERPUD1-215ENST00000568676 ST20-MTHFSA0A0A6YYL1 179 aa22.13■■□□□ 1.13
HERPUD1-215ENST00000568676 LY75O60449 1722 aa22.13■■□□□ 1.13
HERPUD1-215ENST00000568676 DOT1LQ8TEK3 1739 aa22.12■■□□□ 1.13
HERPUD1-215ENST00000568676 SMG6Q86US8 1419 aaKnown RBP22.12■■□□□ 1.13
HERPUD1-215ENST00000568676 NSD2O96028 1365 aa22.12■■□□□ 1.13
HERPUD1-215ENST00000568676 USP47Q96K76 1375 aa22.11■■□□□ 1.13
HERPUD1-215ENST00000568676 CCNL1Q9UK58 526 aaPredicted RBP22.1■■□□□ 1.13
HERPUD1-215ENST00000568676 MEGF6O75095 1541 aa22.1■■□□□ 1.13
HERPUD1-215ENST00000568676 RAPGEF4Q8WZA2 1011 aa22.09■■□□□ 1.13
HERPUD1-215ENST00000568676 SHANK3Q9BYB0 1731 aa22.09■■□□□ 1.13
HERPUD1-215ENST00000568676 C1QTNF8P60827 252 aa22.08■■□□□ 1.13
HERPUD1-215ENST00000568676 KIF24Q5T7B8 1368 aa22.08■■□□□ 1.12
HERPUD1-215ENST00000568676 TMF1P82094 1093 aa22.07■■□□□ 1.12
HERPUD1-215ENST00000568676 KLHL34Q8N239 644 aa22.07■■□□□ 1.12
HERPUD1-215ENST00000568676 FYB1O15117 783 aa22.06■■□□□ 1.12
HERPUD1-215ENST00000568676 NBPF6Q5VWK0 638 aa22.06■■□□□ 1.12
HERPUD1-215ENST00000568676 NBPF4Q96M43 638 aa22.06■■□□□ 1.12
HERPUD1-215ENST00000568676 TUBGCP6Q96RT7 1819 aa22.06■■□□□ 1.12
HERPUD1-215ENST00000568676 TATP17735 454 aaPredicted RBP22.05■■□□□ 1.12
HERPUD1-215ENST00000568676 CDCA8Q53HL2 280 aa22.05■■□□□ 1.12
HERPUD1-215ENST00000568676 PCDH11XQ9BZA7 1347 aa22.05■■□□□ 1.12
HERPUD1-215ENST00000568676 PCDH11YQ9BZA8 1340 aa22.05■■□□□ 1.12
HERPUD1-215ENST00000568676 INSRP06213 1382 aa22.04■■□□□ 1.12
HERPUD1-215ENST00000568676 GRIN3BO60391 1043 aa22.04■■□□□ 1.12
HERPUD1-215ENST00000568676 FBLN1P23142 703 aa22.04■■□□□ 1.12
HERPUD1-215ENST00000568676 KCNQ4P56696 695 aa22.04■■□□□ 1.12
HERPUD1-215ENST00000568676 RRS1Q15050 365 aaKnown RBP22.04■■□□□ 1.12
HERPUD1-215ENST00000568676 FLAD1Q8NFF5 587 aa22.04■■□□□ 1.12
HERPUD1-215ENST00000568676 RGPD2P0DJD1 1756 aa22.04■■□□□ 1.12
HERPUD1-215ENST00000568676 FLT4P35916 1363 aa22.02■■□□□ 1.12
HERPUD1-215ENST00000568676 SENP3-EIF4A1A0A087X0R7 540 aa22.02■■□□□ 1.12
HERPUD1-215ENST00000568676 PELP1Q8IZL8 1130 aaKnown RBP22.02■■□□□ 1.12
HERPUD1-215ENST00000568676 GGNBP2Q9H3C7 697 aa22.02■■□□□ 1.12
HERPUD1-215ENST00000568676 MSH5O43196 834 aa22.01■■□□□ 1.11
HERPUD1-215ENST00000568676 COL23A1Q86Y22 540 aaPredicted RBP22.01■■□□□ 1.11
HERPUD1-215ENST00000568676 GIGYF1O75420 1035 aaPredicted RBP22■■□□□ 1.11
HERPUD1-215ENST00000568676 NLGN2Q8NFZ4 835 aa22■■□□□ 1.11
HERPUD1-215ENST00000568676 USHBP1Q8N6Y0 703 aa21.98■■□□□ 1.11
HERPUD1-215ENST00000568676 SMARCC1Q92922 1105 aaPredicted RBP21.98■■□□□ 1.11
HERPUD1-215ENST00000568676 PALLDQ8WX93 1383 aa21.98■■□□□ 1.11
HERPUD1-215ENST00000568676 C5P01031 1676 aa21.98■■□□□ 1.11
HERPUD1-215ENST00000568676 HSP90AB2PQ58FF8 381 aa21.97■■□□□ 1.11
HERPUD1-215ENST00000568676 CD2APQ9Y5K6 639 aa21.97■■□□□ 1.11
HERPUD1-215ENST00000568676 NSD3Q9BZ95 1437 aa21.96■■□□□ 1.11
HERPUD1-215ENST00000568676 KIF20BQ96Q89 1820 aa21.95■■□□□ 1.1
HERPUD1-215ENST00000568676 YBX3P16989 372 aaKnown RBP eCLIP21.93■■□□□ 1.1
HERPUD1-215ENST00000568676 GOLGB1Q14789 3259 aaKnown RBP21.93■■□□□ 1.1
HERPUD1-215ENST00000568676 MPRIPQ6WCQ1 1025 aa21.93■■□□□ 1.1
HERPUD1-215ENST00000568676 CYP27B1O15528 508 aa21.92■■□□□ 1.1
HERPUD1-215ENST00000568676 NCAPD2Q15021 1401 aa21.91■■□□□ 1.1
HERPUD1-215ENST00000568676 MSL1Q68DK7 614 aa21.91■■□□□ 1.1
HERPUD1-215ENST00000568676 AK7Q96M32 723 aa21.91■■□□□ 1.1
HERPUD1-215ENST00000568676 TAF1LQ8IZX4 1826 aa21.91■■□□□ 1.1
HERPUD1-215ENST00000568676 PKD1L3Q7Z443 1732 aa21.91■■□□□ 1.1
HERPUD1-215ENST00000568676 NKX1-1Q15270 411 aaPredicted RBP21.9■■□□□ 1.1
HERPUD1-215ENST00000568676 SPG7Q9UQ90 795 aa21.9■■□□□ 1.1
HERPUD1-215ENST00000568676 C4BP0C0L5 1744 aa21.89■■□□□ 1.1
HERPUD1-215ENST00000568676 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.89■■□□□ 1.09
HERPUD1-215ENST00000568676 PLEKHG2Q9H7P9 1386 aa21.87■■□□□ 1.09
HERPUD1-215ENST00000568676 SSFA2P28290 1259 aa21.87■■□□□ 1.09
HERPUD1-215ENST00000568676 EMILIN1Q9Y6C2 1016 aa21.87■■□□□ 1.09
HERPUD1-215ENST00000568676 TOGARAM1Q9Y4F4 1720 aa21.86■■□□□ 1.09
HERPUD1-215ENST00000568676 WASHC2AQ641Q2 1341 aa21.86■■□□□ 1.09
HERPUD1-215ENST00000568676 ITGB4P16144 1822 aa21.86■■□□□ 1.09
HERPUD1-215ENST00000568676 PIGBQ92521 554 aa21.86■■□□□ 1.09
HERPUD1-215ENST00000568676 CARD14Q9BXL6 1004 aa21.86■■□□□ 1.09
HERPUD1-215ENST00000568676 ANKRD26Q9UPS8 1709 aa21.86■■□□□ 1.09
HERPUD1-215ENST00000568676 ATP10DQ9P241 1426 aa21.83■■□□□ 1.09
HERPUD1-215ENST00000568676 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.83■■□□□ 1.09
HERPUD1-215ENST00000568676 LOC102724428A0A0B4J2F2 783 aa21.83■■□□□ 1.09
HERPUD1-215ENST00000568676 SIK1P57059 783 aa21.83■■□□□ 1.09
HERPUD1-215ENST00000568676 TIMELESSQ9UNS1 1208 aa21.83■■□□□ 1.09
HERPUD1-215ENST00000568676 UBR3Q6ZT12 1888 aa21.82■■□□□ 1.08
HERPUD1-215ENST00000568676 PPM1GO15355 546 aaPredicted RBP21.82■■□□□ 1.08
HERPUD1-215ENST00000568676 TMOD3Q9NYL9 352 aa21.82■■□□□ 1.08
HERPUD1-215ENST00000568676 IFNL2Q8IZJ0 200 aa21.81■■□□□ 1.08
HERPUD1-215ENST00000568676 GPBP1L1Q9HC44 474 aaPredicted RBP21.81■■□□□ 1.08
HERPUD1-215ENST00000568676 ADCY9O60503 1353 aa21.8■■□□□ 1.08
HERPUD1-215ENST00000568676 PHF14O94880 888 aa21.8■■□□□ 1.08
HERPUD1-215ENST00000568676 EYA1Q99502 592 aa21.8■■□□□ 1.08
HERPUD1-215ENST00000568676 MAP2P11137 1827 aaKnown RBP21.8■■□□□ 1.08
HERPUD1-215ENST00000568676 IGSF1Q8N6C5 1336 aa21.79■■□□□ 1.08
HERPUD1-215ENST00000568676 PHKG2P15735 406 aa21.78■■□□□ 1.08
HERPUD1-215ENST00000568676 AMIGO3Q86WK7 504 aa21.77■■□□□ 1.08
HERPUD1-215ENST00000568676 LINC00116Q8NCU8 138 aa21.77■■□□□ 1.08
HERPUD1-215ENST00000568676 ATP6V1AP38606 617 aa21.76■■□□□ 1.07
HERPUD1-215ENST00000568676 POLKQ9UBT6 870 aa21.76■■□□□ 1.07
HERPUD1-215ENST00000568676 GNPATO15228 680 aa21.75■■□□□ 1.07
HERPUD1-215ENST00000568676 ASAP1Q9ULH1 1129 aa21.75■■□□□ 1.07
HERPUD1-215ENST00000568676 HSP90AB1P08238 724 aaKnown RBP21.73■■□□□ 1.07
HERPUD1-215ENST00000568676 TRIM26Q12899 539 aaPredicted RBP21.73■■□□□ 1.07
HERPUD1-215ENST00000568676 ZNF831Q5JPB2 1677 aa21.72■■□□□ 1.07
HERPUD1-215ENST00000568676 ERVV-2B6SEH9 535 aa21.72■■□□□ 1.07
HERPUD1-215ENST00000568676 ITPK1Q13572 414 aa21.72■■□□□ 1.07
HERPUD1-215ENST00000568676 ATG3Q9NT62 314 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms