RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 GRXCR2A6NFK2 248 aa4.45□□□□□ -1.7
VPS35-209ENST00000568642 PPM1GO15355 546 aaPredicted RBP4.45□□□□□ -1.7
VPS35-209ENST00000568642 ADAM23O75077 832 aa4.45□□□□□ -1.7
VPS35-209ENST00000568642 IGHA1P01876 353 aa4.45□□□□□ -1.7
VPS35-209ENST00000568642 OSBPP22059 807 aa4.45□□□□□ -1.7
VPS35-209ENST00000568642 MTMR14Q8NCE2 650 aa4.45□□□□□ -1.7
VPS35-209ENST00000568642 PBXIP1Q96AQ6 731 aa4.45□□□□□ -1.7
VPS35-209ENST00000568642 ADAMTS8Q9UP79 889 aa4.45□□□□□ -1.7
VPS35-209ENST00000568642 DNMT3AQ9Y6K1 912 aaPredicted RBP4.45□□□□□ -1.7
VPS35-209ENST00000568642 ALKQ9UM73 1620 aa4.45□□□□□ -1.7
VPS35-209ENST00000568642 SUPT6HQ7KZ85 1726 aaKnown RBP4.44□□□□□ -1.7
VPS35-209ENST00000568642 RNF225M0QZC1 329 aaPredicted RBP4.44□□□□□ -1.7
VPS35-209ENST00000568642 GPR37L1O60883 481 aa4.44□□□□□ -1.7
VPS35-209ENST00000568642 ZNF662Q6ZS27 426 aa4.44□□□□□ -1.7
VPS35-209ENST00000568642 GLMNQ92990 594 aa4.44□□□□□ -1.7
VPS35-209ENST00000568642 MRRFQ96E11 262 aaKnown RBP4.44□□□□□ -1.7
VPS35-209ENST00000568642 C8orf37Q96NL8 207 aa4.44□□□□□ -1.7
VPS35-209ENST00000568642 PRDM9Q9NQV7 894 aa4.44□□□□□ -1.7
VPS35-209ENST00000568642 CUX1P39880 1505 aa4.44□□□□□ -1.7
VPS35-209ENST00000568642 ABCC2Q92887 1545 aa4.44□□□□□ -1.7
VPS35-209ENST00000568642 NCOA1Q15788 1441 aa4.44□□□□□ -1.7
VPS35-209ENST00000568642 LRRC7Q96NW7 1537 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 GNPATO15228 680 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 KDM4AO75164 1064 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 ZNF16P17020 682 aaPredicted RBP4.43□□□□□ -1.7
VPS35-209ENST00000568642 CC2D2BQ6DHV5 1058 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 PHLDB3Q6NSJ2 640 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 BANK1Q8NDB2 785 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 PHOX2BQ99453 314 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 TMEM134Q9H6X4 195 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 PTPRKQ15262 1439 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 POGZQ7Z3K3 1410 aa4.43□□□□□ -1.7
VPS35-209ENST00000568642 MAGI3Q5TCQ9 1506 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 WIZO95785 1651 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 DNAJB2P25686 324 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 PRELPP51888 382 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 ADAMTS12P58397 1594 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 GIMAP6Q6P9H5 292 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 FAM9AQ8IZU1 332 aaPredicted RBP4.42□□□□□ -1.7
VPS35-209ENST00000568642 FAM160A2Q8N612 972 aaPredicted RBP4.42□□□□□ -1.7
VPS35-209ENST00000568642 KRTAP4-12Q9BQ66 201 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 KRTAP9-9Q9BYP9 154 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 KRTAP9-4Q9BYQ2 154 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 GDPD2Q9HCC8 539 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 CHD4Q14839 1912 aa4.42□□□□□ -1.7
VPS35-209ENST00000568642 ACIN1Q9UKV3 1341 aaKnown RBP4.42□□□□□ -1.7
VPS35-209ENST00000568642 ARHGEF40Q8TER5 1519 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 ARAP3Q8WWN8 1544 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 SIGLEC1Q9BZZ2 1709 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 SOBPA7XYQ1 873 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 ZBTB24O43167 697 aaPredicted RBP4.41□□□□□ -1.7
VPS35-209ENST00000568642 CANXP27824 592 aaKnown RBP4.41□□□□□ -1.7
VPS35-209ENST00000568642 IRS1P35568 1242 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 PDE4CQ08493 712 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 TRIM32Q13049 653 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 ZNF592Q92610 1267 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 THAP11Q96EK4 314 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 DRC1Q96MC2 740 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 ZFP42Q96MM3 310 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 POLR3GLQ9BT43 218 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 VRTNQ9H8Y1 702 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 PRDM16Q9HAZ2 1276 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 NHSL1Q5SYE7 1610 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 FANCAO15360 1455 aa4.41□□□□□ -1.7
VPS35-209ENST00000568642 CAMSAP1Q5T5Y3 1602 aa4.4□□□□□ -1.7
VPS35-209ENST00000568642 RFC5P40937 340 aa4.4□□□□□ -1.71
VPS35-209ENST00000568642 FAM161AQ3B820 660 aa4.4□□□□□ -1.71
VPS35-209ENST00000568642 Q8N3U1 123 aa4.4□□□□□ -1.71
VPS35-209ENST00000568642 ZNF784Q8NCA9 323 aaPredicted RBP4.4□□□□□ -1.71
VPS35-209ENST00000568642 SREK1Q8WXA9 508 aaKnown RBP4.4□□□□□ -1.71
VPS35-209ENST00000568642 CALR3Q96L12 384 aaKnown RBP4.4□□□□□ -1.71
VPS35-209ENST00000568642 SLC52A1Q9NWF4 448 aa4.4□□□□□ -1.71
VPS35-209ENST00000568642 CPS1P31327 1500 aa4.4□□□□□ -1.71
VPS35-209ENST00000568642 ABCA5Q8WWZ7 1642 aa4.39□□□□□ -1.71
VPS35-209ENST00000568642 CDK12Q9NYV4 1490 aaPredicted RBP4.39□□□□□ -1.71
VPS35-209ENST00000568642 SPDYE16A6NNV3 312 aaPredicted RBP4.39□□□□□ -1.71
VPS35-209ENST00000568642 TCF3P15923 654 aa4.39□□□□□ -1.71
VPS35-209ENST00000568642 KRT76Q01546 638 aa4.39□□□□□ -1.71
VPS35-209ENST00000568642 MYSM1Q5VVJ2 828 aa4.39□□□□□ -1.71
VPS35-209ENST00000568642 PPP2R2DQ66LE6 453 aa4.39□□□□□ -1.71
VPS35-209ENST00000568642 SLAIN2Q9P270 581 aa4.39□□□□□ -1.71
VPS35-209ENST00000568642 RUSC2Q8N2Y8 1516 aa4.39□□□□□ -1.71
VPS35-209ENST00000568642 ZCCHC11Q5TAX3 1644 aaKnown RBP4.39□□□□□ -1.71
VPS35-209ENST00000568642 CD109Q6YHK3 1445 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 FGD5Q6ZNL6 1462 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 KRTAP4-8A0A0G2JLE6 195 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 CAPN5O15484 640 aaPredicted RBP4.38□□□□□ -1.71
VPS35-209ENST00000568642 VAMP1P23763 118 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 FOXK2Q01167 660 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 TTLL12Q14166 644 aaPredicted RBP4.38□□□□□ -1.71
VPS35-209ENST00000568642 HIC1Q14526 733 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 TAF7LQ5H9L4 462 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 TICAM2Q86XR7 235 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 TBC1D2Q9BYX2 928 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 POLR3EQ9NVU0 708 aa4.38□□□□□ -1.71
VPS35-209ENST00000568642 RNF17Q9BXT8 1623 aaKnown RBP4.37□□□□□ -1.71
VPS35-209ENST00000568642 LOC102724159A0A0B4J2E5 919 aa4.37□□□□□ -1.71
VPS35-209ENST00000568642 RCCD1A6NED2 376 aa4.37□□□□□ -1.71
VPS35-209ENST00000568642 ALDH1A1P00352 501 aa4.37□□□□□ -1.71
VPS35-209ENST00000568642 RFX1P22670 979 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms