RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 NSD3Q9BZ95 1437 aa13.14□□□□□ -0.31
SF3B3-211ENST00000568291 TNNT2P45379 298 aaPredicted RBP13.14□□□□□ -0.31
SF3B3-211ENST00000568291 AMPHP49418 695 aa13.14□□□□□ -0.31
SF3B3-211ENST00000568291 ACSBG1Q96GR2 724 aa13.14□□□□□ -0.31
SF3B3-211ENST00000568291 CHD4Q14839 1912 aa13.13□□□□□ -0.31
SF3B3-211ENST00000568291 DCAF8L1A6NGE4 600 aa13.13□□□□□ -0.31
SF3B3-211ENST00000568291 IL2RBP14784 551 aa13.13□□□□□ -0.31
SF3B3-211ENST00000568291 IP6K1Q92551 441 aa13.13□□□□□ -0.31
SF3B3-211ENST00000568291 KIF20BQ96Q89 1820 aa13.13□□□□□ -0.31
SF3B3-211ENST00000568291 PPM1GO15355 546 aaPredicted RBP13.12□□□□□ -0.31
SF3B3-211ENST00000568291 HOXC9P31274 260 aa13.12□□□□□ -0.31
SF3B3-211ENST00000568291 CNGB1Q14028 1251 aaPredicted RBP13.12□□□□□ -0.31
SF3B3-211ENST00000568291 SLC15A2Q16348 729 aa13.12□□□□□ -0.31
SF3B3-211ENST00000568291 KIF7Q2M1P5 1343 aa13.12□□□□□ -0.31
SF3B3-211ENST00000568291 PTGER2P43116 358 aa13.11□□□□□ -0.31
SF3B3-211ENST00000568291 EMILIN1Q9Y6C2 1016 aa13.11□□□□□ -0.31
SF3B3-211ENST00000568291 LY75O60449 1722 aa13.1□□□□□ -0.31
SF3B3-211ENST00000568291 HSP90AB2PQ58FF8 381 aa13.1□□□□□ -0.31
SF3B3-211ENST00000568291 USHBP1Q8N6Y0 703 aa13.1□□□□□ -0.31
SF3B3-211ENST00000568291 ATF5Q9Y2D1 282 aaPredicted RBP13.1□□□□□ -0.31
SF3B3-211ENST00000568291 COL24A1Q17RW2 1714 aa13.09□□□□□ -0.31
SF3B3-211ENST00000568291 MTFR1LQ9H019 292 aa13.09□□□□□ -0.31
SF3B3-211ENST00000568291 RNF216Q9NWF9 866 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-211ENST00000568291 CGNL1Q0VF96 1302 aa13.08□□□□□ -0.32
SF3B3-211ENST00000568291 KCNA4P22459 653 aa13.07□□□□□ -0.32
SF3B3-211ENST00000568291 NBPF6Q5VWK0 638 aa13.07□□□□□ -0.32
SF3B3-211ENST00000568291 NBPF4Q96M43 638 aa13.07□□□□□ -0.32
SF3B3-211ENST00000568291 MEGF6O75095 1541 aa13.07□□□□□ -0.32
SF3B3-211ENST00000568291 RTL1A6NKG5 1358 aa13.07□□□□□ -0.32
SF3B3-211ENST00000568291 ZNF827Q17R98 1081 aa13.06□□□□□ -0.32
SF3B3-211ENST00000568291 SGIP1Q9BQI5 828 aa13.06□□□□□ -0.32
SF3B3-211ENST00000568291 FHDC1Q9C0D6 1143 aaPredicted RBP13.06□□□□□ -0.32
SF3B3-211ENST00000568291 WASHC2AQ641Q2 1341 aa13.05□□□□□ -0.32
SF3B3-211ENST00000568291 DDX54Q8TDD1 881 aaKnown RBP13.04□□□□□ -0.32
SF3B3-211ENST00000568291 SYT17Q9BSW7 474 aa13.04□□□□□ -0.32
SF3B3-211ENST00000568291 LRRC4BQ9NT99 713 aa13.04□□□□□ -0.32
SF3B3-211ENST00000568291 POLKQ9UBT6 870 aa13.04□□□□□ -0.32
SF3B3-211ENST00000568291 KNSTRNQ9Y448 316 aa13.04□□□□□ -0.32
SF3B3-211ENST00000568291 C5P01031 1676 aa13.04□□□□□ -0.32
SF3B3-211ENST00000568291 NSD2O96028 1365 aa13.04□□□□□ -0.32
SF3B3-211ENST00000568291 MAP3K5Q99683 1374 aa13.04□□□□□ -0.32
SF3B3-211ENST00000568291 MORC1Q86VD1 984 aa13.03□□□□□ -0.32
SF3B3-211ENST00000568291 ARXQ96QS3 562 aa13.03□□□□□ -0.32
SF3B3-211ENST00000568291 SMG6Q86US8 1419 aaKnown RBP13.03□□□□□ -0.32
SF3B3-211ENST00000568291 TAF1LQ8IZX4 1826 aa13.02□□□□□ -0.32
SF3B3-211ENST00000568291 SLC27A3Q5K4L6 730 aa13.02□□□□□ -0.33
SF3B3-211ENST00000568291 CC2D1BQ5T0F9 858 aaKnown RBP13.02□□□□□ -0.33
SF3B3-211ENST00000568291 PKD1L3Q7Z443 1732 aa13.02□□□□□ -0.33
SF3B3-211ENST00000568291 ANKRD26Q9UPS8 1709 aa13.02□□□□□ -0.33
SF3B3-211ENST00000568291 TOGARAM1Q9Y4F4 1720 aa13.02□□□□□ -0.33
SF3B3-211ENST00000568291 ITGB4P16144 1822 aa13.02□□□□□ -0.33
SF3B3-211ENST00000568291 AKT1S1Q96B36 256 aa13.01□□□□□ -0.33
SF3B3-211ENST00000568291 SYTL4Q96C24 671 aaPredicted RBP13.01□□□□□ -0.33
SF3B3-211ENST00000568291 PNPLA7Q6ZV29 1317 aa13□□□□□ -0.33
SF3B3-211ENST00000568291 PER1O15534 1290 aaPredicted RBP13□□□□□ -0.33
SF3B3-211ENST00000568291 AMER1Q5JTC6 1135 aaPredicted RBP13□□□□□ -0.33
SF3B3-211ENST00000568291 INSRP06213 1382 aa12.99□□□□□ -0.33
SF3B3-211ENST00000568291 FLT4P35916 1363 aa12.99□□□□□ -0.33
SF3B3-211ENST00000568291 PRIM1P49642 420 aaKnown RBP12.99□□□□□ -0.33
SF3B3-211ENST00000568291 KCNQ4P56696 695 aa12.99□□□□□ -0.33
SF3B3-211ENST00000568291 ZCRB1Q8TBF4 217 aaKnown RBP12.99□□□□□ -0.33
SF3B3-211ENST00000568291 EIF4A2Q14240 407 aaKnown RBP12.98□□□□□ -0.33
SF3B3-211ENST00000568291 KLHL34Q8N239 644 aa12.98□□□□□ -0.33
SF3B3-211ENST00000568291 ZNF784Q8NCA9 323 aaPredicted RBP12.98□□□□□ -0.33
SF3B3-211ENST00000568291 SLC16A10Q8TF71 515 aa12.98□□□□□ -0.33
SF3B3-211ENST00000568291 EYA1Q99502 592 aa12.98□□□□□ -0.33
SF3B3-211ENST00000568291 POLD1P28340 1107 aa12.97□□□□□ -0.33
SF3B3-211ENST00000568291 NCBP3Q53F19 620 aaKnown RBP12.97□□□□□ -0.33
SF3B3-211ENST00000568291 RAPGEF4Q8WZA2 1011 aa12.97□□□□□ -0.33
SF3B3-211ENST00000568291 TFCP2L1Q9NZI6 479 aa12.97□□□□□ -0.33
SF3B3-211ENST00000568291 CCNL1Q9UK58 526 aaPredicted RBP12.96□□□□□ -0.33
SF3B3-211ENST00000568291 MAP2P11137 1827 aaKnown RBP12.96□□□□□ -0.33
SF3B3-211ENST00000568291 PCDH11XQ9BZA7 1347 aa12.95□□□□□ -0.34
SF3B3-211ENST00000568291 PCDH11YQ9BZA8 1340 aa12.95□□□□□ -0.34
SF3B3-211ENST00000568291 TATP17735 454 aaPredicted RBP12.95□□□□□ -0.34
SF3B3-211ENST00000568291 C4BP0C0L5 1744 aa12.95□□□□□ -0.34
SF3B3-211ENST00000568291 UBR3Q6ZT12 1888 aa12.95□□□□□ -0.34
SF3B3-211ENST00000568291 KIF24Q5T7B8 1368 aa12.94□□□□□ -0.34
SF3B3-211ENST00000568291 GPR162Q16538 588 aa12.94□□□□□ -0.34
SF3B3-211ENST00000568291 MTHFSP49914 203 aa12.93□□□□□ -0.34
SF3B3-211ENST00000568291 AEBP1Q8IUX7 1158 aa12.93□□□□□ -0.34
SF3B3-211ENST00000568291 PELP1Q8IZL8 1130 aaKnown RBP12.93□□□□□ -0.34
SF3B3-211ENST00000568291 PALLDQ8WX93 1383 aa12.93□□□□□ -0.34
SF3B3-211ENST00000568291 CYP27B1O15528 508 aa12.92□□□□□ -0.34
SF3B3-211ENST00000568291 NCAPD2Q15021 1401 aa12.92□□□□□ -0.34
SF3B3-211ENST00000568291 NLGN2Q8NFZ4 835 aa12.92□□□□□ -0.34
SF3B3-211ENST00000568291 MSL1Q68DK7 614 aa12.9□□□□□ -0.34
SF3B3-211ENST00000568291 COL23A1Q86Y22 540 aaPredicted RBP12.9□□□□□ -0.34
SF3B3-211ENST00000568291 UTRNP46939 3433 aa12.9□□□□□ -0.35
SF3B3-211ENST00000568291 IL13P35225 146 aa12.89□□□□□ -0.35
SF3B3-211ENST00000568291 HMOX1P09601 288 aa12.88□□□□□ -0.35
SF3B3-211ENST00000568291 SULT6B1Q6IMI4 303 aa12.88□□□□□ -0.35
SF3B3-211ENST00000568291 MPRIPQ6WCQ1 1025 aa12.88□□□□□ -0.35
SF3B3-211ENST00000568291 SPG7Q9UQ90 795 aa12.87□□□□□ -0.35
SF3B3-211ENST00000568291 IGSF1Q8N6C5 1336 aa12.87□□□□□ -0.35
SF3B3-211ENST00000568291 SENP3-EIF4A1A0A087X0R7 540 aa12.86□□□□□ -0.35
SF3B3-211ENST00000568291 CACNB1Q02641 598 aaPredicted RBP12.86□□□□□ -0.35
SF3B3-211ENST00000568291 DDX10Q13206 875 aaKnown RBP12.86□□□□□ -0.35
SF3B3-211ENST00000568291 SMARCC1Q92922 1105 aaPredicted RBP12.86□□□□□ -0.35
SF3B3-211ENST00000568291 AK7Q96M32 723 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 171.1 ms