RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 HSPA1LP34931 641 aa9.1□□□□□ -0.95
VPS39-209ENST00000568029 SCAPERQ9BY12 1400 aa9.09□□□□□ -0.95
VPS39-209ENST00000568029 SOX11P35716 441 aa9.09□□□□□ -0.95
VPS39-209ENST00000568029 MAP10Q9P2G4 905 aa9.09□□□□□ -0.95
VPS39-209ENST00000568029 GPSM3Q9Y4H4 160 aa9.09□□□□□ -0.95
VPS39-209ENST00000568029 CDK13Q14004 1512 aaKnown RBP9.09□□□□□ -0.95
VPS39-209ENST00000568029 CTHP32929 405 aa9.08□□□□□ -0.96
VPS39-209ENST00000568029 ZNF777Q9ULD5 760 aaPredicted RBP9.08□□□□□ -0.96
VPS39-209ENST00000568029 MYO3AQ8NEV4 1616 aa9.08□□□□□ -0.96
VPS39-209ENST00000568029 SETD1AO15047 1707 aaKnown RBP9.08□□□□□ -0.96
VPS39-209ENST00000568029 KIF14Q15058 1648 aa9.07□□□□□ -0.96
VPS39-209ENST00000568029 NKX2-3Q8TAU0 364 aa9.07□□□□□ -0.96
VPS39-209ENST00000568029 PRXQ9BXM0 1461 aa9.07□□□□□ -0.96
VPS39-209ENST00000568029 KDM5CP41229 1560 aa9.07□□□□□ -0.96
VPS39-209ENST00000568029 SUPT6HQ7KZ85 1726 aaKnown RBP9.06□□□□□ -0.96
VPS39-209ENST00000568029 MYO5CQ9NQX4 1742 aa9.06□□□□□ -0.96
VPS39-209ENST00000568029 S1PR4O95977 384 aa9.06□□□□□ -0.96
VPS39-209ENST00000568029 IFFO2Q5TF58 517 aa9.06□□□□□ -0.96
VPS39-209ENST00000568029 NBPF14Q5TI25 921 aa9.06□□□□□ -0.96
VPS39-209ENST00000568029 PDXDC2PQ6P474 469 aa9.06□□□□□ -0.96
VPS39-209ENST00000568029 PLA2G2EQ9NZK7 142 aa9.06□□□□□ -0.96
VPS39-209ENST00000568029 SERPINA10Q9UK55 444 aa9.06□□□□□ -0.96
VPS39-209ENST00000568029 ZNF142P52746 1687 aaPredicted RBP9.06□□□□□ -0.96
VPS39-209ENST00000568029 GGCXP38435 758 aa9.05□□□□□ -0.96
VPS39-209ENST00000568029 NR1H3Q13133 447 aa9.05□□□□□ -0.96
VPS39-209ENST00000568029 ZNF592Q92610 1267 aa9.05□□□□□ -0.96
VPS39-209ENST00000568029 ARXQ96QS3 562 aa9.05□□□□□ -0.96
VPS39-209ENST00000568029 ZBBXA8MT70 800 aa9.04□□□□□ -0.96
VPS39-209ENST00000568029 PIP4K2BP78356 416 aa9.04□□□□□ -0.96
VPS39-209ENST00000568029 UNC93B1Q9H1C4 597 aa9.04□□□□□ -0.96
VPS39-209ENST00000568029 REREQ9P2R6 1566 aa9.03□□□□□ -0.96
VPS39-209ENST00000568029 SETD1BQ9UPS6 1966 aaKnown RBP9.03□□□□□ -0.96
VPS39-209ENST00000568029 POM121CA8CG34 1229 aa9.03□□□□□ -0.96
VPS39-209ENST00000568029 ANKLE1Q8NAG6 615 aa9.03□□□□□ -0.96
VPS39-209ENST00000568029 GLMNQ92990 594 aa9.03□□□□□ -0.96
VPS39-209ENST00000568029 FCF1Q9Y324 198 aaKnown RBP9.03□□□□□ -0.96
VPS39-209ENST00000568029 MCCD1P59942 119 aaPredicted RBP9.02□□□□□ -0.97
VPS39-209ENST00000568029 EIF4G2P78344 907 aaKnown RBP eCLIP9.02□□□□□ -0.97
VPS39-209ENST00000568029 PTK2Q05397 1052 aa9.02□□□□□ -0.97
VPS39-209ENST00000568029 VAC14Q08AM6 782 aa9.02□□□□□ -0.97
VPS39-209ENST00000568029 PTCRAQ6ISU1 281 aaPredicted RBP9.02□□□□□ -0.97
VPS39-209ENST00000568029 CCDC82Q8N4S0 544 aa9.02□□□□□ -0.97
VPS39-209ENST00000568029 CCDC97Q96F63 343 aaPredicted RBP9.02□□□□□ -0.97
VPS39-209ENST00000568029 ALG2Q9H553 416 aa9.02□□□□□ -0.97
VPS39-209ENST00000568029 TRAPPC8Q9Y2L5 1435 aa9.02□□□□□ -0.97
VPS39-209ENST00000568029 NEURL4Q96JN8 1562 aa9.02□□□□□ -0.97
VPS39-209ENST00000568029 CEP170BQ9Y4F5 1589 aaPredicted RBP9.02□□□□□ -0.97
VPS39-209ENST00000568029 TCOF1Q13428 1488 aaKnown RBP9.02□□□□□ -0.97
VPS39-209ENST00000568029 CLTCQ00610 1675 aaKnown RBP9.01□□□□□ -0.97
VPS39-209ENST00000568029 PLCH2O75038 1416 aa9.01□□□□□ -0.97
VPS39-209ENST00000568029 FBXO45P0C2W1 286 aa9.01□□□□□ -0.97
VPS39-209ENST00000568029 CCDC24Q8N4L8 307 aa9.01□□□□□ -0.97
VPS39-209ENST00000568029 CALR3Q96L12 384 aaKnown RBP9.01□□□□□ -0.97
VPS39-209ENST00000568029 MROH2AA6NES4 1674 aa9□□□□□ -0.97
VPS39-209ENST00000568029 RANGAP1P46060 587 aaPredicted RBP9□□□□□ -0.97
VPS39-209ENST00000568029 ADAMTS19Q8TE59 1207 aa9□□□□□ -0.97
VPS39-209ENST00000568029 RGS17Q9UGC6 210 aaPredicted RBP9□□□□□ -0.97
VPS39-209ENST00000568029 ZNF518AQ6AHZ1 1483 aa9□□□□□ -0.97
VPS39-209ENST00000568029 POLR1AO95602 1720 aaPredicted RBP9□□□□□ -0.97
VPS39-209ENST00000568029 KIDINS220Q9ULH0 1771 aa8.99□□□□□ -0.97
VPS39-209ENST00000568029 RNF223E7ERA6 249 aa8.99□□□□□ -0.97
VPS39-209ENST00000568029 HDGFL1Q5TGJ6 251 aa8.99□□□□□ -0.97
VPS39-209ENST00000568029 SH3BP5LQ7L8J4 393 aa8.99□□□□□ -0.97
VPS39-209ENST00000568029 AFAP1Q8N556 730 aa8.99□□□□□ -0.97
VPS39-209ENST00000568029 ITSN2Q9NZM3 1697 aa8.99□□□□□ -0.97
VPS39-209ENST00000568029 LRRIQ1Q96JM4 1722 aa8.99□□□□□ -0.97
VPS39-209ENST00000568029 AGLP35573 1532 aa8.99□□□□□ -0.97
VPS39-209ENST00000568029 STRCP1A6NGW2 1772 aa8.99□□□□□ -0.97
VPS39-209ENST00000568029 CDC42BPBQ9Y5S2 1711 aa8.98□□□□□ -0.97
VPS39-209ENST00000568029 SH3RF1Q7Z6J0 888 aa8.98□□□□□ -0.97
VPS39-209ENST00000568029 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.98□□□□□ -0.97
VPS39-209ENST00000568029 CEP162Q5TB80 1403 aa8.97□□□□□ -0.97
VPS39-209ENST00000568029 PLA2R1Q13018 1463 aa8.97□□□□□ -0.97
VPS39-209ENST00000568029 ARHGAP5Q13017 1502 aa8.97□□□□□ -0.97
VPS39-209ENST00000568029 RPIAP49247 311 aa8.97□□□□□ -0.97
VPS39-209ENST00000568029 SEMA3FQ13275 785 aa8.97□□□□□ -0.97
VPS39-209ENST00000568029 ZNF511Q8NB15 262 aa8.97□□□□□ -0.97
VPS39-209ENST00000568029 OCSTAMPQ9BR26 566 aa8.97□□□□□ -0.97
VPS39-209ENST00000568029 VWDEQ8N2E2 1590 aa8.97□□□□□ -0.97
VPS39-209ENST00000568029 ABCC1P33527 1531 aa8.96□□□□□ -0.97
VPS39-209ENST00000568029 PLEKHD1A6NEE1 506 aa8.96□□□□□ -0.98
VPS39-209ENST00000568029 PPP1R18Q6NYC8 613 aa8.96□□□□□ -0.98
VPS39-209ENST00000568029 BPHLQ86WA6 291 aaPredicted RBP8.96□□□□□ -0.98
VPS39-209ENST00000568029 ARHGAP9Q9BRR9 750 aa8.96□□□□□ -0.98
VPS39-209ENST00000568029 DNMT1P26358 1616 aaKnown RBP8.95□□□□□ -0.98
VPS39-209ENST00000568029 ZBTB24O43167 697 aaPredicted RBP8.95□□□□□ -0.98
VPS39-209ENST00000568029 BAP1Q92560 729 aa8.95□□□□□ -0.98
VPS39-209ENST00000568029 NPATQ14207 1427 aa8.95□□□□□ -0.98
VPS39-209ENST00000568029 WNT7BP56706 349 aa8.94□□□□□ -0.98
VPS39-209ENST00000568029 HOMEZQ8IX15 550 aa8.94□□□□□ -0.98
VPS39-209ENST00000568029 NFATC2IPQ8NCF5 419 aa8.94□□□□□ -0.98
VPS39-209ENST00000568029 MLH3Q9UHC1 1453 aa8.94□□□□□ -0.98
VPS39-209ENST00000568029 PPEF1O14829 653 aaPredicted RBP8.93□□□□□ -0.98
VPS39-209ENST00000568029 TRIM32Q13049 653 aa8.93□□□□□ -0.98
VPS39-209ENST00000568029 ZBTB33Q86T24 672 aa8.93□□□□□ -0.98
VPS39-209ENST00000568029 ADAM32Q8TC27 787 aa8.93□□□□□ -0.98
VPS39-209ENST00000568029 C1QTNF2Q9BXJ5 285 aa8.93□□□□□ -0.98
VPS39-209ENST00000568029 SHANK2Q9UPX8 1470 aa8.93□□□□□ -0.98
VPS39-209ENST00000568029 CPS1P31327 1500 aa8.93□□□□□ -0.98
VPS39-209ENST00000568029 PREX2Q70Z35 1606 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms