RNA–Protein interactions for RNA: ENST00000567549.2

LINC01238-205, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

BASIC

Gene LINC01238, Length 1,107 nt, Biotype antisense RNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-205ENST00000567549 NSD3Q9BZ95 1437 aa25.73■■□□□ 1.71
LINC01238-205ENST00000567549 PCDH11XQ9BZA7 1347 aa25.73■■□□□ 1.71
LINC01238-205ENST00000567549 PCDH11YQ9BZA8 1340 aa25.73■■□□□ 1.71
LINC01238-205ENST00000567549 NBPF6Q5VWK0 638 aa25.73■■□□□ 1.71
LINC01238-205ENST00000567549 SLC16A10Q8TF71 515 aa25.73■■□□□ 1.71
LINC01238-205ENST00000567549 NBPF4Q96M43 638 aa25.73■■□□□ 1.71
LINC01238-205ENST00000567549 ATF5Q9Y2D1 282 aaPredicted RBP25.73■■□□□ 1.71
LINC01238-205ENST00000567549 DOT1LQ8TEK3 1739 aa25.73■■□□□ 1.71
LINC01238-205ENST00000567549 MYOM1P52179 1685 aa25.73■■□□□ 1.71
LINC01238-205ENST00000567549 FBLN1P23142 703 aa25.72■■□□□ 1.71
LINC01238-205ENST00000567549 PRIM1P49642 420 aaKnown RBP25.72■■□□□ 1.71
LINC01238-205ENST00000567549 MEGF6O75095 1541 aa25.72■■□□□ 1.71
LINC01238-205ENST00000567549 YY1P25490 414 aa25.7■■□□□ 1.7
LINC01238-205ENST00000567549 PTGER2P43116 358 aa25.7■■□□□ 1.7
LINC01238-205ENST00000567549 QSER1Q2KHR3 1735 aa25.69■■□□□ 1.7
LINC01238-205ENST00000567549 PDGFDQ9GZP0 370 aaPredicted RBP25.69■■□□□ 1.7
LINC01238-205ENST00000567549 HSP90AB2PQ58FF8 381 aa25.68■■□□□ 1.7
LINC01238-205ENST00000567549 SHANK3Q9BYB0 1731 aa25.68■■□□□ 1.7
LINC01238-205ENST00000567549 POLD1P28340 1107 aa25.67■■□□□ 1.7
LINC01238-205ENST00000567549 EIF4G2P78344 907 aaKnown RBP eCLIP25.67■■□□□ 1.7
LINC01238-205ENST00000567549 LRRC4BQ9NT99 713 aa25.67■■□□□ 1.7
LINC01238-205ENST00000567549 TFCP2L1Q9NZI6 479 aa25.67■■□□□ 1.7
LINC01238-205ENST00000567549 CARD14Q9BXL6 1004 aa25.66■■□□□ 1.7
LINC01238-205ENST00000567549 LY75O60449 1722 aa25.66■■□□□ 1.7
LINC01238-205ENST00000567549 USHBP1Q8N6Y0 703 aa25.65■■□□□ 1.7
LINC01238-205ENST00000567549 AKT1S1Q96B36 256 aa25.65■■□□□ 1.7
LINC01238-205ENST00000567549 ARXQ96QS3 562 aa25.65■■□□□ 1.7
LINC01238-205ENST00000567549 CCNL1Q9UK58 526 aaPredicted RBP25.65■■□□□ 1.7
LINC01238-205ENST00000567549 PPM1GO15355 546 aaPredicted RBP25.64■■□□□ 1.7
LINC01238-205ENST00000567549 ZNF827Q17R98 1081 aa25.64■■□□□ 1.7
LINC01238-205ENST00000567549 POLR3GLQ9BT43 218 aa25.63■■□□□ 1.69
LINC01238-205ENST00000567549 FHDC1Q9C0D6 1143 aaPredicted RBP25.63■■□□□ 1.69
LINC01238-205ENST00000567549 SPG7Q9UQ90 795 aa25.63■■□□□ 1.69
LINC01238-205ENST00000567549 NSD2O96028 1365 aa25.63■■□□□ 1.69
LINC01238-205ENST00000567549 ANKRD26Q9UPS8 1709 aa25.63■■□□□ 1.69
LINC01238-205ENST00000567549 MAP3K5Q99683 1374 aa25.62■■□□□ 1.69
LINC01238-205ENST00000567549 SYT17Q9BSW7 474 aa25.62■■□□□ 1.69
LINC01238-205ENST00000567549 EMILIN1Q9Y6C2 1016 aa25.62■■□□□ 1.69
LINC01238-205ENST00000567549 WASHC2AQ641Q2 1341 aa25.62■■□□□ 1.69
LINC01238-205ENST00000567549 CCER1Q8TC90 406 aaPredicted RBP25.61■■□□□ 1.69
LINC01238-205ENST00000567549 SGIP1Q9BQI5 828 aa25.61■■□□□ 1.69
LINC01238-205ENST00000567549 MAP2P11137 1827 aaKnown RBP25.6■■□□□ 1.69
LINC01238-205ENST00000567549 SMARCC1Q92922 1105 aaPredicted RBP25.6■■□□□ 1.69
LINC01238-205ENST00000567549 PLEKHG2Q9H7P9 1386 aa25.59■■□□□ 1.69
LINC01238-205ENST00000567549 FLAD1Q8NFF5 587 aa25.58■■□□□ 1.69
LINC01238-205ENST00000567549 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.58■■□□□ 1.69
LINC01238-205ENST00000567549 PKD1L3Q7Z443 1732 aa25.57■■□□□ 1.68
LINC01238-205ENST00000567549 PNPLA7Q6ZV29 1317 aa25.57■■□□□ 1.68
LINC01238-205ENST00000567549 NCAPD2Q15021 1401 aa25.55■■□□□ 1.68
LINC01238-205ENST00000567549 MPRIPQ6WCQ1 1025 aa25.54■■□□□ 1.68
LINC01238-205ENST00000567549 PALLDQ8WX93 1383 aa25.54■■□□□ 1.68
LINC01238-205ENST00000567549 MSH5O43196 834 aa25.53■■□□□ 1.68
LINC01238-205ENST00000567549 CYP27B1O15528 508 aa25.52■■□□□ 1.68
LINC01238-205ENST00000567549 HSPA5P11021 654 aaKnown RBP25.52■■□□□ 1.68
LINC01238-205ENST00000567549 POLKQ9UBT6 870 aa25.52■■□□□ 1.68
LINC01238-205ENST00000567549 C5P01031 1676 aa25.52■■□□□ 1.68
LINC01238-205ENST00000567549 TUBGCP6Q96RT7 1819 aa25.51■■□□□ 1.67
LINC01238-205ENST00000567549 COL24A1Q17RW2 1714 aa25.51■■□□□ 1.67
LINC01238-205ENST00000567549 KCNQ4P56696 695 aa25.5■■□□□ 1.67
LINC01238-205ENST00000567549 NKX1-1Q15270 411 aaPredicted RBP25.5■■□□□ 1.67
LINC01238-205ENST00000567549 EYA1Q99502 592 aa25.5■■□□□ 1.67
LINC01238-205ENST00000567549 CHD4Q14839 1912 aa25.49■■□□□ 1.67
LINC01238-205ENST00000567549 ITGB4P16144 1822 aa25.49■■□□□ 1.67
LINC01238-205ENST00000567549 IFNL2Q8IZJ0 200 aa25.49■■□□□ 1.67
LINC01238-205ENST00000567549 KLHL34Q8N239 644 aa25.49■■□□□ 1.67
LINC01238-205ENST00000567549 TMOD3Q9NYL9 352 aa25.48■■□□□ 1.67
LINC01238-205ENST00000567549 TNNT2P45379 298 aaPredicted RBP25.47■■□□□ 1.67
LINC01238-205ENST00000567549 GPR162Q16538 588 aa25.47■■□□□ 1.67
LINC01238-205ENST00000567549 AK7Q96M32 723 aa25.47■■□□□ 1.67
LINC01238-205ENST00000567549 PANK3Q9H999 370 aa25.47■■□□□ 1.67
LINC01238-205ENST00000567549 HSP90AB1P08238 724 aaKnown RBP25.46■■□□□ 1.67
LINC01238-205ENST00000567549 TAF1LQ8IZX4 1826 aa25.46■■□□□ 1.67
LINC01238-205ENST00000567549 KNSTRNQ9Y448 316 aa25.45■■□□□ 1.66
LINC01238-205ENST00000567549 EIF4A2Q14240 407 aaKnown RBP25.44■■□□□ 1.66
LINC01238-205ENST00000567549 MORC1Q86VD1 984 aa25.43■■□□□ 1.66
LINC01238-205ENST00000567549 COL23A1Q86Y22 540 aaPredicted RBP25.43■■□□□ 1.66
LINC01238-205ENST00000567549 TOGARAM1Q9Y4F4 1720 aa25.43■■□□□ 1.66
LINC01238-205ENST00000567549 PHKG2P15735 406 aa25.42■■□□□ 1.66
LINC01238-205ENST00000567549 PIGBQ92521 554 aa25.42■■□□□ 1.66
LINC01238-205ENST00000567549 C4BP0C0L5 1744 aa25.41■■□□□ 1.66
LINC01238-205ENST00000567549 AMOTQ4VCS5 1084 aa25.41■■□□□ 1.66
LINC01238-205ENST00000567549 IGSF1Q8N6C5 1336 aa25.4■■□□□ 1.66
LINC01238-205ENST00000567549 PLEKHO1Q53GL0 409 aaPredicted RBP25.4■■□□□ 1.66
LINC01238-205ENST00000567549 LOC102724428A0A0B4J2F2 783 aa25.38■■□□□ 1.65
LINC01238-205ENST00000567549 SSFA2P28290 1259 aa25.38■■□□□ 1.65
LINC01238-205ENST00000567549 SIK1P57059 783 aa25.38■■□□□ 1.65
LINC01238-205ENST00000567549 PELP1Q8IZL8 1130 aaKnown RBP25.38■■□□□ 1.65
LINC01238-205ENST00000567549 ERVV-2B6SEH9 535 aa25.37■■□□□ 1.65
LINC01238-205ENST00000567549 GRIN3BO60391 1043 aa25.37■■□□□ 1.65
LINC01238-205ENST00000567549 DCAF5Q96JK2 942 aa25.37■■□□□ 1.65
LINC01238-205ENST00000567549 CD2APQ9Y5K6 639 aa25.35■■□□□ 1.65
LINC01238-205ENST00000567549 ATP6V1AP38606 617 aa25.34■■□□□ 1.65
LINC01238-205ENST00000567549 C1orf141Q5JVX7 400 aa25.34■■□□□ 1.65
LINC01238-205ENST00000567549 ZNF784Q8NCA9 323 aaPredicted RBP25.33■■□□□ 1.65
LINC01238-205ENST00000567549 UBR3Q6ZT12 1888 aa25.32■■□□□ 1.64
LINC01238-205ENST00000567549 MSL1Q68DK7 614 aa25.32■■□□□ 1.64
LINC01238-205ENST00000567549 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.31■■□□□ 1.64
LINC01238-205ENST00000567549 ZNF530Q6P9A1 599 aaPredicted RBP25.31■■□□□ 1.64
LINC01238-205ENST00000567549 PHF14O94880 888 aa25.3■■□□□ 1.64
LINC01238-205ENST00000567549 ASAP1Q9ULH1 1129 aa25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms