RNA–Protein interactions for RNA: ENST00000566466.1

SMPD3-207, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-207ENST00000566466 ZNF772Q68DY9 489 aaPredicted RBP12.38□□□□□ -0.43
SMPD3-207ENST00000566466 SULT6B1Q6IMI4 303 aa12.38□□□□□ -0.43
SMPD3-207ENST00000566466 TCP11L2Q8N4U5 519 aa12.38□□□□□ -0.43
SMPD3-207ENST00000566466 CFAP53Q96M91 514 aa12.38□□□□□ -0.43
SMPD3-207ENST00000566466 ADAMTS8Q9UP79 889 aa12.38□□□□□ -0.43
SMPD3-207ENST00000566466 PLEKHG2Q9H7P9 1386 aa12.38□□□□□ -0.43
SMPD3-207ENST00000566466 PHACTR3Q96KR7 559 aa12.37□□□□□ -0.43
SMPD3-207ENST00000566466 USP35Q9P2H5 1018 aa12.37□□□□□ -0.43
SMPD3-207ENST00000566466 THRAP3Q9Y2W1 955 aaKnown RBP12.37□□□□□ -0.43
SMPD3-207ENST00000566466 U2SURPO15042 1029 aaKnown RBP12.36□□□□□ -0.43
SMPD3-207ENST00000566466 FAM98CQ17RN3 349 aaKnown RBP12.36□□□□□ -0.43
SMPD3-207ENST00000566466 ADAMTS7Q9UKP4 1686 aa12.35□□□□□ -0.43
SMPD3-207ENST00000566466 U2AF1L5P0DN76 240 aaPredicted RBP12.35□□□□□ -0.43
SMPD3-207ENST00000566466 IL2RBP14784 551 aa12.35□□□□□ -0.43
SMPD3-207ENST00000566466 PRKAR2BP31323 418 aa12.35□□□□□ -0.43
SMPD3-207ENST00000566466 U2AF1Q01081 240 aaKnown RBP eCLIP12.35□□□□□ -0.43
SMPD3-207ENST00000566466 FCHSD2O94868 740 aa12.34□□□□□ -0.43
SMPD3-207ENST00000566466 RBM6P78332 1123 aaKnown RBP12.34□□□□□ -0.43
SMPD3-207ENST00000566466 BRWD3Q6RI45 1802 aa12.34□□□□□ -0.43
SMPD3-207ENST00000566466 TOGARAM1Q9Y4F4 1720 aa12.34□□□□□ -0.43
SMPD3-207ENST00000566466 DCAF8L1A6NGE4 600 aa12.33□□□□□ -0.44
SMPD3-207ENST00000566466 CYP27B1O15528 508 aa12.33□□□□□ -0.44
SMPD3-207ENST00000566466 NUDCQ9Y266 331 aa12.33□□□□□ -0.44
SMPD3-207ENST00000566466 KDM6AO15550 1401 aaPredicted RBP12.33□□□□□ -0.44
SMPD3-207ENST00000566466 MTHFSDQ2M296 383 aaKnown RBP12.32□□□□□ -0.44
SMPD3-207ENST00000566466 SEPT12Q8IYM1 358 aa12.32□□□□□ -0.44
SMPD3-207ENST00000566466 CCDC9Q9Y3X0 531 aaKnown RBP12.32□□□□□ -0.44
SMPD3-207ENST00000566466 CCDC146Q8IYE0 955 aa12.31□□□□□ -0.44
SMPD3-207ENST00000566466 MARCH10Q8NA82 808 aaPredicted RBP12.31□□□□□ -0.44
SMPD3-207ENST00000566466 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.31□□□□□ -0.44
SMPD3-207ENST00000566466 TATP17735 454 aaPredicted RBP12.3□□□□□ -0.44
SMPD3-207ENST00000566466 RXRBP28702 533 aa12.3□□□□□ -0.44
SMPD3-207ENST00000566466 CDCA7Q9BWT1 371 aaPredicted RBP12.3□□□□□ -0.44
SMPD3-207ENST00000566466 BCL9O00512 1426 aa12.29□□□□□ -0.44
SMPD3-207ENST00000566466 MRC1P22897 1456 aa12.29□□□□□ -0.44
SMPD3-207ENST00000566466 PHKG2P15735 406 aa12.29□□□□□ -0.44
SMPD3-207ENST00000566466 WDR43Q15061 677 aaKnown RBP eCLIP12.29□□□□□ -0.44
SMPD3-207ENST00000566466 FAM9BQ8IZU0 186 aa12.29□□□□□ -0.44
SMPD3-207ENST00000566466 RAPGEF4Q8WZA2 1011 aa12.29□□□□□ -0.44
SMPD3-207ENST00000566466 SLC4A2P04920 1241 aa12.28□□□□□ -0.44
SMPD3-207ENST00000566466 ZCRB1Q8TBF4 217 aaKnown RBP12.28□□□□□ -0.44
SMPD3-207ENST00000566466 RUNDC1Q96C34 613 aa12.28□□□□□ -0.44
SMPD3-207ENST00000566466 CEMIPQ8WUJ3 1361 aa12.28□□□□□ -0.44
SMPD3-207ENST00000566466 DLG5Q8TDM6 1919 aa12.27□□□□□ -0.44
SMPD3-207ENST00000566466 SENP3-EIF4A1A0A087X0R7 540 aa12.27□□□□□ -0.45
SMPD3-207ENST00000566466 TMPOP42166 694 aaKnown RBP12.27□□□□□ -0.45
SMPD3-207ENST00000566466 NKX1-1Q15270 411 aaPredicted RBP12.27□□□□□ -0.45
SMPD3-207ENST00000566466 DDB1Q16531 1140 aa12.27□□□□□ -0.45
SMPD3-207ENST00000566466 FAM182BQ5T319 152 aa12.27□□□□□ -0.45
SMPD3-207ENST00000566466 TRIM35Q9UPQ4 493 aa12.27□□□□□ -0.45
SMPD3-207ENST00000566466 PCDH11XQ9BZA7 1347 aa12.27□□□□□ -0.45
SMPD3-207ENST00000566466 PCDH11YQ9BZA8 1340 aa12.27□□□□□ -0.45
SMPD3-207ENST00000566466 DOT1LQ8TEK3 1739 aa12.26□□□□□ -0.45
SMPD3-207ENST00000566466 APAF1O14727 1248 aa12.26□□□□□ -0.45
SMPD3-207ENST00000566466 NFE2L2Q16236 605 aa12.26□□□□□ -0.45
SMPD3-207ENST00000566466 AMOTQ4VCS5 1084 aa12.26□□□□□ -0.45
SMPD3-207ENST00000566466 ZNF530Q6P9A1 599 aaPredicted RBP12.26□□□□□ -0.45
SMPD3-207ENST00000566466 PTF1AQ7RTS3 328 aa12.26□□□□□ -0.45
SMPD3-207ENST00000566466 RRP7AQ9Y3A4 280 aaKnown RBP12.26□□□□□ -0.45
SMPD3-207ENST00000566466 MAP3K5Q99683 1374 aa12.26□□□□□ -0.45
SMPD3-207ENST00000566466 EXOC5O00471 708 aa12.25□□□□□ -0.45
SMPD3-207ENST00000566466 PLEKHO1Q53GL0 409 aaPredicted RBP12.25□□□□□ -0.45
SMPD3-207ENST00000566466 ILDR2Q71H61 639 aa12.25□□□□□ -0.45
SMPD3-207ENST00000566466 IL17REQ8NFR9 667 aa12.25□□□□□ -0.45
SMPD3-207ENST00000566466 ZNF521Q96K83 1311 aa12.25□□□□□ -0.45
SMPD3-207ENST00000566466 EP400Q96L91 3159 aa12.25□□□□□ -0.45
SMPD3-207ENST00000566466 SIPA1L3O60292 1781 aaPredicted RBP12.25□□□□□ -0.45
SMPD3-207ENST00000566466 SCN11AQ9UI33 1791 aa12.25□□□□□ -0.45
SMPD3-207ENST00000566466 NHSQ6T4R5 1651 aa12.24□□□□□ -0.45
SMPD3-207ENST00000566466 GAS2L2Q8NHY3 880 aa12.24□□□□□ -0.45
SMPD3-207ENST00000566466 LGR6Q9HBX8 967 aa12.24□□□□□ -0.45
SMPD3-207ENST00000566466 SPG7Q9UQ90 795 aa12.24□□□□□ -0.45
SMPD3-207ENST00000566466 SBF2Q86WG5 1849 aa12.23□□□□□ -0.45
SMPD3-207ENST00000566466 PAPPAQ13219 1627 aa12.23□□□□□ -0.45
SMPD3-207ENST00000566466 DCTN1Q14203 1278 aa12.23□□□□□ -0.45
SMPD3-207ENST00000566466 AKAP4Q5JQC9 854 aa12.23□□□□□ -0.45
SMPD3-207ENST00000566466 KRT27Q7Z3Y8 459 aa12.23□□□□□ -0.45
SMPD3-207ENST00000566466 DDX54Q8TDD1 881 aaKnown RBP12.23□□□□□ -0.45
SMPD3-207ENST00000566466 THUMPD2Q9BTF0 503 aaKnown RBP12.23□□□□□ -0.45
SMPD3-207ENST00000566466 RNMTO43148 476 aaKnown RBP12.22□□□□□ -0.45
SMPD3-207ENST00000566466 MPRIPQ6WCQ1 1025 aa12.22□□□□□ -0.45
SMPD3-207ENST00000566466 IFNL2Q8IZJ0 200 aa12.22□□□□□ -0.45
SMPD3-207ENST00000566466 VIRMAQ69YN4 1812 aaKnown RBP12.22□□□□□ -0.45
SMPD3-207ENST00000566466 TNS1Q9HBL0 1735 aaKnown RBP12.22□□□□□ -0.45
SMPD3-207ENST00000566466 KCNQ2O43526 872 aa12.21□□□□□ -0.45
SMPD3-207ENST00000566466 MCM10Q7L590 875 aa12.21□□□□□ -0.45
SMPD3-207ENST00000566466 ITGB4P16144 1822 aa12.21□□□□□ -0.46
SMPD3-207ENST00000566466 MAPK8IP3Q9UPT6 1336 aa12.2□□□□□ -0.46
SMPD3-207ENST00000566466 A0A0G2JS52 829 aa12.2□□□□□ -0.46
SMPD3-207ENST00000566466 GNAT3A8MTJ3 354 aa12.2□□□□□ -0.46
SMPD3-207ENST00000566466 RIPK4P57078 832 aa12.2□□□□□ -0.46
SMPD3-207ENST00000566466 MYT1Q01538 1121 aa12.2□□□□□ -0.46
SMPD3-207ENST00000566466 CCDC27Q2M243 656 aa12.2□□□□□ -0.46
SMPD3-207ENST00000566466 HTATSF1O43719 755 aaKnown RBP12.19□□□□□ -0.46
SMPD3-207ENST00000566466 PDE3BQ13370 1112 aa12.19□□□□□ -0.46
SMPD3-207ENST00000566466 WWC1Q8IX03 1113 aa12.19□□□□□ -0.46
SMPD3-207ENST00000566466 DCAF5Q96JK2 942 aa12.19□□□□□ -0.46
SMPD3-207ENST00000566466 SPINK5Q9NQ38 1064 aaPredicted RBP12.19□□□□□ -0.46
SMPD3-207ENST00000566466 KCPQ6ZWJ8 1503 aa12.19□□□□□ -0.46
SMPD3-207ENST00000566466 NEUROD2Q15784 382 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms