RNA–Protein interactions for RNA: ENST00000565003.5

CMTM3-209, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-209ENST00000565003 CASZ1Q86V15 1759 aa13.88□□□□□ -0.19
CMTM3-209ENST00000565003 DOT1LQ8TEK3 1739 aa13.88□□□□□ -0.19
CMTM3-209ENST00000565003 PDGFDQ9GZP0 370 aaPredicted RBP13.88□□□□□ -0.19
CMTM3-209ENST00000565003 PAPPAQ13219 1627 aa13.88□□□□□ -0.19
CMTM3-209ENST00000565003 KAT6BQ8WYB5 2073 aa13.87□□□□□ -0.19
CMTM3-209ENST00000565003 ZCRB1Q8TBF4 217 aaKnown RBP13.87□□□□□ -0.19
CMTM3-209ENST00000565003 NSD2O96028 1365 aa13.85□□□□□ -0.19
CMTM3-209ENST00000565003 NCAPD2Q15021 1401 aa13.85□□□□□ -0.19
CMTM3-209ENST00000565003 PPM1GO15355 546 aaPredicted RBP13.85□□□□□ -0.19
CMTM3-209ENST00000565003 SLC15A2Q16348 729 aa13.85□□□□□ -0.19
CMTM3-209ENST00000565003 RAPGEF4Q8WZA2 1011 aa13.85□□□□□ -0.19
CMTM3-209ENST00000565003 PANK3Q9H999 370 aa13.85□□□□□ -0.19
CMTM3-209ENST00000565003 SPON1Q9HCB6 807 aa13.85□□□□□ -0.19
CMTM3-209ENST00000565003 STK32BQ9NY57 414 aa13.85□□□□□ -0.19
CMTM3-209ENST00000565003 MAP2P11137 1827 aaKnown RBP13.85□□□□□ -0.19
CMTM3-209ENST00000565003 PRIM1P49642 420 aaKnown RBP13.84□□□□□ -0.19
CMTM3-209ENST00000565003 SYTL4Q96C24 671 aaPredicted RBP13.84□□□□□ -0.19
CMTM3-209ENST00000565003 LRRC4BQ9NT99 713 aa13.84□□□□□ -0.19
CMTM3-209ENST00000565003 POLKQ9UBT6 870 aa13.84□□□□□ -0.19
CMTM3-209ENST00000565003 WASHC2AQ641Q2 1341 aa13.84□□□□□ -0.19
CMTM3-209ENST00000565003 TATP17735 454 aaPredicted RBP13.83□□□□□ -0.2
CMTM3-209ENST00000565003 TNNT2P45379 298 aaPredicted RBP13.83□□□□□ -0.2
CMTM3-209ENST00000565003 ZBTB7AO95365 584 aa13.82□□□□□ -0.2
CMTM3-209ENST00000565003 ZNF827Q17R98 1081 aa13.82□□□□□ -0.2
CMTM3-209ENST00000565003 PCDH11XQ9BZA7 1347 aa13.82□□□□□ -0.2
CMTM3-209ENST00000565003 PCDH11YQ9BZA8 1340 aa13.82□□□□□ -0.2
CMTM3-209ENST00000565003 PKD1L3Q7Z443 1732 aa13.81□□□□□ -0.2
CMTM3-209ENST00000565003 LY75O60449 1722 aa13.81□□□□□ -0.2
CMTM3-209ENST00000565003 CYP27B1O15528 508 aa13.8□□□□□ -0.2
CMTM3-209ENST00000565003 KCNQ4P56696 695 aa13.8□□□□□ -0.2
CMTM3-209ENST00000565003 SLC27A3Q5K4L6 730 aa13.8□□□□□ -0.2
CMTM3-209ENST00000565003 EYA1Q99502 592 aa13.8□□□□□ -0.2
CMTM3-209ENST00000565003 PPP1R1BQ9UD71 204 aaPredicted RBP13.8□□□□□ -0.2
CMTM3-209ENST00000565003 TOGARAM1Q9Y4F4 1720 aa13.79□□□□□ -0.2
CMTM3-209ENST00000565003 PTGER2P43116 358 aa13.79□□□□□ -0.2
CMTM3-209ENST00000565003 EIF4A2Q14240 407 aaKnown RBP13.79□□□□□ -0.2
CMTM3-209ENST00000565003 KIF7Q2M1P5 1343 aa13.79□□□□□ -0.2
CMTM3-209ENST00000565003 AKT1S1Q96B36 256 aa13.78□□□□□ -0.2
CMTM3-209ENST00000565003 ATF5Q9Y2D1 282 aaPredicted RBP13.78□□□□□ -0.2
CMTM3-209ENST00000565003 TUBGCP6Q96RT7 1819 aa13.76□□□□□ -0.21
CMTM3-209ENST00000565003 MTFR1LQ9H019 292 aa13.76□□□□□ -0.21
CMTM3-209ENST00000565003 CCNL1Q9UK58 526 aaPredicted RBP13.76□□□□□ -0.21
CMTM3-209ENST00000565003 QSER1Q2KHR3 1735 aa13.76□□□□□ -0.21
CMTM3-209ENST00000565003 PNPLA7Q6ZV29 1317 aa13.75□□□□□ -0.21
CMTM3-209ENST00000565003 IGSF1Q8N6C5 1336 aa13.75□□□□□ -0.21
CMTM3-209ENST00000565003 AMER1Q5JTC6 1135 aaPredicted RBP13.75□□□□□ -0.21
CMTM3-209ENST00000565003 MORC1Q86VD1 984 aa13.75□□□□□ -0.21
CMTM3-209ENST00000565003 SGIP1Q9BQI5 828 aa13.75□□□□□ -0.21
CMTM3-209ENST00000565003 SPG7Q9UQ90 795 aa13.75□□□□□ -0.21
CMTM3-209ENST00000565003 KNSTRNQ9Y448 316 aa13.75□□□□□ -0.21
CMTM3-209ENST00000565003 ITGB4P16144 1822 aa13.75□□□□□ -0.21
CMTM3-209ENST00000565003 PALLDQ8WX93 1383 aa13.74□□□□□ -0.21
CMTM3-209ENST00000565003 NKX1-1Q15270 411 aaPredicted RBP13.74□□□□□ -0.21
CMTM3-209ENST00000565003 MPRIPQ6WCQ1 1025 aa13.74□□□□□ -0.21
CMTM3-209ENST00000565003 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.74□□□□□ -0.21
CMTM3-209ENST00000565003 C5P01031 1676 aa13.72□□□□□ -0.21
CMTM3-209ENST00000565003 PHKG2P15735 406 aa13.72□□□□□ -0.21
CMTM3-209ENST00000565003 PIGBQ92521 554 aa13.72□□□□□ -0.21
CMTM3-209ENST00000565003 TFCP2L1Q9NZI6 479 aa13.72□□□□□ -0.21
CMTM3-209ENST00000565003 PLEKHG2Q9H7P9 1386 aa13.71□□□□□ -0.22
CMTM3-209ENST00000565003 TAF1LQ8IZX4 1826 aa13.7□□□□□ -0.22
CMTM3-209ENST00000565003 PER1O15534 1290 aaPredicted RBP13.7□□□□□ -0.22
CMTM3-209ENST00000565003 AEBP1Q8IUX7 1158 aa13.7□□□□□ -0.22
CMTM3-209ENST00000565003 IFNL2Q8IZJ0 200 aa13.7□□□□□ -0.22
CMTM3-209ENST00000565003 FHDC1Q9C0D6 1143 aaPredicted RBP13.7□□□□□ -0.22
CMTM3-209ENST00000565003 COL24A1Q17RW2 1714 aa13.7□□□□□ -0.22
CMTM3-209ENST00000565003 SLC16A10Q8TF71 515 aa13.69□□□□□ -0.22
CMTM3-209ENST00000565003 IL13P35225 146 aa13.68□□□□□ -0.22
CMTM3-209ENST00000565003 SMARCC1Q92922 1105 aaPredicted RBP13.68□□□□□ -0.22
CMTM3-209ENST00000565003 ARXQ96QS3 562 aa13.68□□□□□ -0.22
CMTM3-209ENST00000565003 SYT17Q9BSW7 474 aa13.68□□□□□ -0.22
CMTM3-209ENST00000565003 TMOD3Q9NYL9 352 aa13.68□□□□□ -0.22
CMTM3-209ENST00000565003 C4BP0C0L5 1744 aa13.67□□□□□ -0.22
CMTM3-209ENST00000565003 CC2D1BQ5T0F9 858 aaKnown RBP13.67□□□□□ -0.22
CMTM3-209ENST00000565003 COL23A1Q86Y22 540 aaPredicted RBP13.67□□□□□ -0.22
CMTM3-209ENST00000565003 KDRP35968 1356 aa13.67□□□□□ -0.22
CMTM3-209ENST00000565003 KDM6AO15550 1401 aaPredicted RBP13.66□□□□□ -0.22
CMTM3-209ENST00000565003 SULT6B1Q6IMI4 303 aa13.66□□□□□ -0.22
CMTM3-209ENST00000565003 ASAP1Q9ULH1 1129 aa13.66□□□□□ -0.22
CMTM3-209ENST00000565003 MAP3K5Q99683 1374 aa13.66□□□□□ -0.22
CMTM3-209ENST00000565003 LOC102724428A0A0B4J2F2 783 aa13.65□□□□□ -0.22
CMTM3-209ENST00000565003 MTHFSP49914 203 aa13.65□□□□□ -0.22
CMTM3-209ENST00000565003 SIK1P57059 783 aa13.65□□□□□ -0.22
CMTM3-209ENST00000565003 PLEKHO1Q53GL0 409 aaPredicted RBP13.65□□□□□ -0.22
CMTM3-209ENST00000565003 ZNF530Q6P9A1 599 aaPredicted RBP13.65□□□□□ -0.22
CMTM3-209ENST00000565003 AMIGO3Q86WK7 504 aa13.65□□□□□ -0.22
CMTM3-209ENST00000565003 MSH5O43196 834 aa13.64□□□□□ -0.23
CMTM3-209ENST00000565003 POLD1P28340 1107 aa13.64□□□□□ -0.23
CMTM3-209ENST00000565003 AMOTQ4VCS5 1084 aa13.64□□□□□ -0.23
CMTM3-209ENST00000565003 LINC00116Q8NCU8 138 aa13.64□□□□□ -0.23
CMTM3-209ENST00000565003 DCAF5Q96JK2 942 aa13.64□□□□□ -0.23
CMTM3-209ENST00000565003 ATG3Q9NT62 314 aa13.64□□□□□ -0.23
CMTM3-209ENST00000565003 UBR3Q6ZT12 1888 aa13.63□□□□□ -0.23
CMTM3-209ENST00000565003 NPC1L1Q9UHC9 1359 aa13.63□□□□□ -0.23
CMTM3-209ENST00000565003 DCAF8L1A6NGE4 600 aa13.63□□□□□ -0.23
CMTM3-209ENST00000565003 ERVV-2B6SEH9 535 aa13.63□□□□□ -0.23
CMTM3-209ENST00000565003 HSP90AB1P08238 724 aaKnown RBP13.63□□□□□ -0.23
CMTM3-209ENST00000565003 ITPK1Q13572 414 aa13.63□□□□□ -0.23
CMTM3-209ENST00000565003 MSL1Q68DK7 614 aa13.63□□□□□ -0.23
CMTM3-209ENST00000565003 SMIM5Q71RC9 77 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms