RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ATP5J2-PTCD1G3V325 749 aa8.54□□□□□ -1.04
LINC00560-201ENST00000564593 KCTD15Q96SI1 283 aaPredicted RBP8.54□□□□□ -1.04
LINC00560-201ENST00000564593 NXF1Q9UBU9 619 aaKnown RBP8.54□□□□□ -1.04
LINC00560-201ENST00000564593 ZBTB7CA1YPR0 619 aa8.53□□□□□ -1.04
LINC00560-201ENST00000564593 ESPNB1AK53 854 aa8.53□□□□□ -1.04
LINC00560-201ENST00000564593 RASA1P20936 1047 aa8.53□□□□□ -1.04
LINC00560-201ENST00000564593 LORP23490 312 aaPredicted RBP8.53□□□□□ -1.04
LINC00560-201ENST00000564593 OXLD1Q5BKU9 147 aa8.53□□□□□ -1.04
LINC00560-201ENST00000564593 RC3H1Q5TC82 1133 aaKnown RBP8.53□□□□□ -1.04
LINC00560-201ENST00000564593 LARP1Q6PKG0 1096 aaKnown RBP8.53□□□□□ -1.04
LINC00560-201ENST00000564593 VASH1Q7L8A9 365 aaPredicted RBP8.53□□□□□ -1.04
LINC00560-201ENST00000564593 SEPT12Q8IYM1 358 aa8.53□□□□□ -1.04
LINC00560-201ENST00000564593 KCTD17Q8N5Z5 321 aa8.53□□□□□ -1.04
LINC00560-201ENST00000564593 ZSCAN1Q8NBB4 408 aa8.53□□□□□ -1.04
LINC00560-201ENST00000564593 GMPRP36959 345 aa8.52□□□□□ -1.04
LINC00560-201ENST00000564593 RAB15P59190 212 aa8.52□□□□□ -1.04
LINC00560-201ENST00000564593 ELOAQ14241 798 aaKnown RBP8.52□□□□□ -1.04
LINC00560-201ENST00000564593 ARID5BQ14865 1188 aa8.52□□□□□ -1.04
LINC00560-201ENST00000564593 AEBP1Q8IUX7 1158 aa8.52□□□□□ -1.04
LINC00560-201ENST00000564593 NPAS3Q8IXF0 933 aa8.52□□□□□ -1.04
LINC00560-201ENST00000564593 NOD1Q9Y239 953 aa8.52□□□□□ -1.04
LINC00560-201ENST00000564593 CARNS1A5YM72 827 aa8.52□□□□□ -1.05
LINC00560-201ENST00000564593 FAM196BA6NMK8 535 aa8.52□□□□□ -1.05
LINC00560-201ENST00000564593 CRTC2Q53ET0 693 aaPredicted RBP8.52□□□□□ -1.05
LINC00560-201ENST00000564593 CCDC125Q86Z20 511 aa8.52□□□□□ -1.05
LINC00560-201ENST00000564593 NOVA2Q9UNW9 492 aaKnown RBP8.52□□□□□ -1.05
LINC00560-201ENST00000564593 PCDHB11Q9Y5F2 797 aa8.52□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L15C9J2P7 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L10C9JJH3 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L13C9JLJ4 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L12C9JPN9 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L11C9JVI0 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L21D6R901 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L18D6R9N7 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L22D6RA61 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L17D6RBQ6 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L19D6RCP7 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L20D6RJB6 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 USP17L24Q0WX57 530 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 TRIM50Q86XT4 487 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 IRF7Q92985 503 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 CDCA7Q9BWT1 371 aaPredicted RBP8.51□□□□□ -1.05
LINC00560-201ENST00000564593 MAP4K5Q9Y4K4 846 aa8.51□□□□□ -1.05
LINC00560-201ENST00000564593 PTK7Q13308 1070 aa8.5□□□□□ -1.05
LINC00560-201ENST00000564593 OGFOD1Q8N543 542 aa8.5□□□□□ -1.05
LINC00560-201ENST00000564593 PODXL2Q9NZ53 605 aa8.5□□□□□ -1.05
LINC00560-201ENST00000564593 ZMIZ1Q9ULJ6 1067 aa8.5□□□□□ -1.05
LINC00560-201ENST00000564593 TMEM88BA6NKF7 163 aa8.49□□□□□ -1.05
LINC00560-201ENST00000564593 ATP1A2P50993 1020 aa8.49□□□□□ -1.05
LINC00560-201ENST00000564593 USP4Q13107 963 aa8.49□□□□□ -1.05
LINC00560-201ENST00000564593 SIRT1Q96EB6 747 aa8.49□□□□□ -1.05
LINC00560-201ENST00000564593 CLDN10P78369 228 aa8.48□□□□□ -1.05
LINC00560-201ENST00000564593 INTS6LQ5JSJ4 861 aaKnown RBP8.48□□□□□ -1.05
LINC00560-201ENST00000564593 TMEM164Q5U3C3 297 aa8.48□□□□□ -1.05
LINC00560-201ENST00000564593 STK32AQ8WU08 396 aa8.48□□□□□ -1.05
LINC00560-201ENST00000564593 CDK15Q96Q40 435 aa8.48□□□□□ -1.05
LINC00560-201ENST00000564593 DNAAF2Q9NVR5 837 aaKnown RBP8.48□□□□□ -1.05
LINC00560-201ENST00000564593 GTF2IP78347 998 aa8.48□□□□□ -1.05
LINC00560-201ENST00000564593 FAM200AQ8TCP9 573 aa8.48□□□□□ -1.05
LINC00560-201ENST00000564593 ZNF594Q96JF6 807 aaPredicted RBP8.48□□□□□ -1.05
LINC00560-201ENST00000564593 ERVH48-1M5A8F1 160 aa8.47□□□□□ -1.05
LINC00560-201ENST00000564593 ANKMY2Q8IV38 441 aa8.47□□□□□ -1.05
LINC00560-201ENST00000564593 LARGE2Q8N3Y3 721 aa8.47□□□□□ -1.05
LINC00560-201ENST00000564593 TLL2Q9Y6L7 1015 aa8.47□□□□□ -1.05
LINC00560-201ENST00000564593 H3BM21 787 aa8.46□□□□□ -1.06
LINC00560-201ENST00000564593 SIAH2O43255 324 aa8.46□□□□□ -1.06
LINC00560-201ENST00000564593 BRD1O95696 1058 aa8.46□□□□□ -1.06
LINC00560-201ENST00000564593 MYCP01106 439 aaPredicted RBP8.46□□□□□ -1.06
LINC00560-201ENST00000564593 FSHRP23945 695 aa8.46□□□□□ -1.06
LINC00560-201ENST00000564593 GRM5P41594 1212 aa8.46□□□□□ -1.06
LINC00560-201ENST00000564593 DPYDQ12882 1025 aa8.46□□□□□ -1.06
LINC00560-201ENST00000564593 MPNDQ8N594 471 aa8.45□□□□□ -1.06
LINC00560-201ENST00000564593 ESF1Q9H501 851 aaKnown RBP8.45□□□□□ -1.06
LINC00560-201ENST00000564593 RBM19Q9Y4C8 960 aaKnown RBP8.45□□□□□ -1.06
LINC00560-201ENST00000564593 ZBTB7BO15156 539 aaPredicted RBP8.44□□□□□ -1.06
LINC00560-201ENST00000564593 ALDH1A1P00352 501 aa8.44□□□□□ -1.06
LINC00560-201ENST00000564593 PSME1Q06323 249 aa8.44□□□□□ -1.06
LINC00560-201ENST00000564593 TRIM46Q7Z4K8 759 aa8.44□□□□□ -1.06
LINC00560-201ENST00000564593 KIAA1024Q9UPX6 916 aa8.44□□□□□ -1.06
LINC00560-201ENST00000564593 PCDHGA11Q9Y5H2 935 aa8.44□□□□□ -1.06
LINC00560-201ENST00000564593 ADH1CP00326 375 aa8.44□□□□□ -1.06
LINC00560-201ENST00000564593 DHX9Q08211 1270 aaKnown RBP8.44□□□□□ -1.06
LINC00560-201ENST00000564593 CCDC102BQ68D86 513 aa8.44□□□□□ -1.06
LINC00560-201ENST00000564593 SIX5Q8N196 739 aa8.44□□□□□ -1.06
LINC00560-201ENST00000564593 TRIM52Q96A61 297 aa8.44□□□□□ -1.06
LINC00560-201ENST00000564593 SCTRP47872 440 aa8.43□□□□□ -1.06
LINC00560-201ENST00000564593 TMPRSS4Q9NRS4 437 aa8.43□□□□□ -1.06
LINC00560-201ENST00000564593 ERBB4Q15303 1308 aa8.42□□□□□ -1.06
LINC00560-201ENST00000564593 PATL2C9JE40 543 aaKnown RBP8.42□□□□□ -1.06
LINC00560-201ENST00000564593 BMP1P13497 986 aa8.42□□□□□ -1.06
LINC00560-201ENST00000564593 VEGFBP49765 207 aa8.42□□□□□ -1.06
LINC00560-201ENST00000564593 KCNA1Q09470 495 aa8.42□□□□□ -1.06
LINC00560-201ENST00000564593 NR5A1Q13285 461 aa8.42□□□□□ -1.06
LINC00560-201ENST00000564593 TPCN2Q8NHX9 752 aa8.42□□□□□ -1.06
LINC00560-201ENST00000564593 CAPN5O15484 640 aaPredicted RBP8.41□□□□□ -1.06
LINC00560-201ENST00000564593 DKK1O94907 266 aa8.41□□□□□ -1.06
LINC00560-201ENST00000564593 SEC13P55735 322 aa8.41□□□□□ -1.06
LINC00560-201ENST00000564593 ERVK-9P63128 1117 aa8.41□□□□□ -1.06
LINC00560-201ENST00000564593 CC2D2BQ6DHV5 1058 aa8.41□□□□□ -1.06
LINC00560-201ENST00000564593 B4GALNT3Q6L9W6 998 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms