RNA–Protein interactions for RNA: ENST00000563945.1

HERC2-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 2, humanhuman

TSL 1 (best)

Gene HERC2, Length 491 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC2-204ENST00000563945 RAPGEF4Q8WZA2 1011 aa29.18■■■□□ 2.26
HERC2-204ENST00000563945 FYB1O15117 783 aa29.17■■■□□ 2.26
HERC2-204ENST00000563945 SMG6Q86US8 1419 aaKnown RBP29.17■■■□□ 2.26
HERC2-204ENST00000563945 PAPPAQ13219 1627 aa29.16■■■□□ 2.26
HERC2-204ENST00000563945 RTL1A6NKG5 1358 aa29.16■■■□□ 2.26
HERC2-204ENST00000563945 CGNL1Q0VF96 1302 aa29.15■■■□□ 2.26
HERC2-204ENST00000563945 TATP17735 454 aaPredicted RBP29.14■■■□□ 2.26
HERC2-204ENST00000563945 KCNQ4P56696 695 aa29.14■■■□□ 2.26
HERC2-204ENST00000563945 GPR162Q16538 588 aa29.14■■■□□ 2.26
HERC2-204ENST00000563945 NBPF6Q5VWK0 638 aa29.14■■■□□ 2.26
HERC2-204ENST00000563945 NBPF4Q96M43 638 aa29.14■■■□□ 2.26
HERC2-204ENST00000563945 CCNL1Q9UK58 526 aaPredicted RBP29.13■■■□□ 2.25
HERC2-204ENST00000563945 USP47Q96K76 1375 aa29.13■■■□□ 2.25
HERC2-204ENST00000563945 MSH5O43196 834 aa29.12■■■□□ 2.25
HERC2-204ENST00000563945 USHBP1Q8N6Y0 703 aa29.12■■■□□ 2.25
HERC2-204ENST00000563945 MAP3K5Q99683 1374 aa29.12■■■□□ 2.25
HERC2-204ENST00000563945 PNPLA7Q6ZV29 1317 aa29.11■■■□□ 2.25
HERC2-204ENST00000563945 HMGB2P26583 209 aaKnown RBP29.1■■■□□ 2.25
HERC2-204ENST00000563945 ZNF784Q8NCA9 323 aaPredicted RBP29.1■■■□□ 2.25
HERC2-204ENST00000563945 MEGF6O75095 1541 aa29.1■■■□□ 2.25
HERC2-204ENST00000563945 TRIM26Q12899 539 aaPredicted RBP29.08■■■□□ 2.25
HERC2-204ENST00000563945 PELP1Q8IZL8 1130 aaKnown RBP29.08■■■□□ 2.25
HERC2-204ENST00000563945 RGPD2P0DJD1 1756 aa29.07■■■□□ 2.24
HERC2-204ENST00000563945 DOT1LQ8TEK3 1739 aa29.07■■■□□ 2.24
HERC2-204ENST00000563945 HSP90AB2PQ58FF8 381 aa29.06■■■□□ 2.24
HERC2-204ENST00000563945 INSRP06213 1382 aa29.04■■■□□ 2.24
HERC2-204ENST00000563945 NSD2O96028 1365 aa29.03■■■□□ 2.24
HERC2-204ENST00000563945 FLT4P35916 1363 aa29.03■■■□□ 2.24
HERC2-204ENST00000563945 PCDH11XQ9BZA7 1347 aa29.03■■■□□ 2.24
HERC2-204ENST00000563945 PCDH11YQ9BZA8 1340 aa29.03■■■□□ 2.24
HERC2-204ENST00000563945 QSER1Q2KHR3 1735 aa29.02■■■□□ 2.24
HERC2-204ENST00000563945 KIF24Q5T7B8 1368 aa29.01■■■□□ 2.24
HERC2-204ENST00000563945 CHD4Q14839 1912 aa29.01■■■□□ 2.23
HERC2-204ENST00000563945 PPM1GO15355 546 aaPredicted RBP29■■■□□ 2.23
HERC2-204ENST00000563945 MPRIPQ6WCQ1 1025 aa29■■■□□ 2.23
HERC2-204ENST00000563945 LY75O60449 1722 aa28.98■■■□□ 2.23
HERC2-204ENST00000563945 COL23A1Q86Y22 540 aaPredicted RBP28.98■■■□□ 2.23
HERC2-204ENST00000563945 SHANK3Q9BYB0 1731 aa28.97■■■□□ 2.23
HERC2-204ENST00000563945 FLAD1Q8NFF5 587 aa28.97■■■□□ 2.23
HERC2-204ENST00000563945 SMARCC1Q92922 1105 aaPredicted RBP28.96■■■□□ 2.23
HERC2-204ENST00000563945 CARD14Q9BXL6 1004 aa28.95■■■□□ 2.22
HERC2-204ENST00000563945 EMILIN1Q9Y6C2 1016 aa28.95■■■□□ 2.22
HERC2-204ENST00000563945 KIF20BQ96Q89 1820 aa28.94■■■□□ 2.22
HERC2-204ENST00000563945 NSD3Q9BZ95 1437 aa28.94■■■□□ 2.22
HERC2-204ENST00000563945 PALLDQ8WX93 1383 aa28.93■■■□□ 2.22
HERC2-204ENST00000563945 CYP27B1O15528 508 aa28.93■■■□□ 2.22
HERC2-204ENST00000563945 NLGN2Q8NFZ4 835 aa28.93■■■□□ 2.22
HERC2-204ENST00000563945 SPG7Q9UQ90 795 aa28.93■■■□□ 2.22
HERC2-204ENST00000563945 MSL1Q68DK7 614 aa28.92■■■□□ 2.22
HERC2-204ENST00000563945 TIMELESSQ9UNS1 1208 aa28.92■■■□□ 2.22
HERC2-204ENST00000563945 TUBGCP6Q96RT7 1819 aa28.92■■■□□ 2.22
HERC2-204ENST00000563945 GRIN3BO60391 1043 aa28.91■■■□□ 2.22
HERC2-204ENST00000563945 POLR3GLQ9BT43 218 aa28.91■■■□□ 2.22
HERC2-204ENST00000563945 AK7Q96M32 723 aa28.9■■■□□ 2.22
HERC2-204ENST00000563945 COL24A1Q17RW2 1714 aa28.88■■■□□ 2.21
HERC2-204ENST00000563945 C1QTNF8P60827 252 aa28.86■■■□□ 2.21
HERC2-204ENST00000563945 WASHC2AQ641Q2 1341 aa28.86■■■□□ 2.21
HERC2-204ENST00000563945 UTRNP46939 3433 aa28.85■■■□□ 2.21
HERC2-204ENST00000563945 PIGBQ92521 554 aa28.85■■■□□ 2.21
HERC2-204ENST00000563945 SENP3-EIF4A1A0A087X0R7 540 aa28.84■■■□□ 2.21
HERC2-204ENST00000563945 NKX1-1Q15270 411 aaPredicted RBP28.83■■■□□ 2.21
HERC2-204ENST00000563945 CD2APQ9Y5K6 639 aa28.83■■■□□ 2.21
HERC2-204ENST00000563945 C5P01031 1676 aa28.83■■■□□ 2.21
HERC2-204ENST00000563945 GIGYF1O75420 1035 aaPredicted RBP28.82■■■□□ 2.2
HERC2-204ENST00000563945 EYA1Q99502 592 aa28.82■■■□□ 2.2
HERC2-204ENST00000563945 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.82■■■□□ 2.2
HERC2-204ENST00000563945 TMOD3Q9NYL9 352 aa28.82■■■□□ 2.2
HERC2-204ENST00000563945 PHF14O94880 888 aa28.81■■■□□ 2.2
HERC2-204ENST00000563945 YBX3P16989 372 aaKnown RBP eCLIP28.8■■■□□ 2.2
HERC2-204ENST00000563945 IFNL2Q8IZJ0 200 aa28.8■■■□□ 2.2
HERC2-204ENST00000563945 TNNT2P45379 298 aaPredicted RBP28.79■■■□□ 2.2
HERC2-204ENST00000563945 PCGF6Q9BYE7 350 aa28.79■■■□□ 2.2
HERC2-204ENST00000563945 POLKQ9UBT6 870 aa28.79■■■□□ 2.2
HERC2-204ENST00000563945 LOC102724428A0A0B4J2F2 783 aa28.77■■■□□ 2.2
HERC2-204ENST00000563945 SIK1P57059 783 aa28.77■■■□□ 2.2
HERC2-204ENST00000563945 ITGB4P16144 1822 aa28.76■■■□□ 2.19
HERC2-204ENST00000563945 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.76■■■□□ 2.19
HERC2-204ENST00000563945 PKD1L3Q7Z443 1732 aa28.75■■■□□ 2.19
HERC2-204ENST00000563945 SSFA2P28290 1259 aa28.75■■■□□ 2.19
HERC2-204ENST00000563945 MAP2P11137 1827 aaKnown RBP28.75■■■□□ 2.19
HERC2-204ENST00000563945 TAF1LQ8IZX4 1826 aa28.75■■■□□ 2.19
HERC2-204ENST00000563945 CLSPNQ9HAW4 1339 aa28.74■■■□□ 2.19
HERC2-204ENST00000563945 PHKG2P15735 406 aa28.74■■■□□ 2.19
HERC2-204ENST00000563945 NCAPD2Q15021 1401 aa28.74■■■□□ 2.19
HERC2-204ENST00000563945 C4BP0C0L5 1744 aa28.74■■■□□ 2.19
HERC2-204ENST00000563945 ATP6V1AP38606 617 aa28.73■■■□□ 2.19
HERC2-204ENST00000563945 ASAP1Q9ULH1 1129 aa28.73■■■□□ 2.19
HERC2-204ENST00000563945 TOGARAM1Q9Y4F4 1720 aa28.72■■■□□ 2.19
HERC2-204ENST00000563945 EIF4A2Q14240 407 aaKnown RBP28.72■■■□□ 2.19
HERC2-204ENST00000563945 LINC00116Q8NCU8 138 aa28.71■■■□□ 2.19
HERC2-204ENST00000563945 GNPATO15228 680 aa28.7■■■□□ 2.18
HERC2-204ENST00000563945 EIF4G2P78344 907 aaKnown RBP eCLIP28.7■■■□□ 2.18
HERC2-204ENST00000563945 SMIM5Q71RC9 77 aa28.7■■■□□ 2.18
HERC2-204ENST00000563945 HSP90AB1P08238 724 aaKnown RBP28.68■■■□□ 2.18
HERC2-204ENST00000563945 AMIGO3Q86WK7 504 aa28.68■■■□□ 2.18
HERC2-204ENST00000563945 ANKRD26Q9UPS8 1709 aa28.67■■■□□ 2.18
HERC2-204ENST00000563945 PLEKHO1Q53GL0 409 aaPredicted RBP28.67■■■□□ 2.18
HERC2-204ENST00000563945 ATG3Q9NT62 314 aa28.67■■■□□ 2.18
HERC2-204ENST00000563945 ITPK1Q13572 414 aa28.65■■■□□ 2.18
HERC2-204ENST00000563945 RBM42Q9BTD8 480 aaKnown RBP28.65■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms