RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 RAPGEF4Q8WZA2 1011 aa24.41■■□□□ 1.5
NME3-205ENST00000563854 SYTL4Q96C24 671 aaPredicted RBP24.41■■□□□ 1.5
NME3-205ENST00000563854 STK32BQ9NY57 414 aa24.41■■□□□ 1.5
NME3-205ENST00000563854 DOT1LQ8TEK3 1739 aa24.4■■□□□ 1.5
NME3-205ENST00000563854 SHANK3Q9BYB0 1731 aa24.4■■□□□ 1.5
NME3-205ENST00000563854 KIF24Q5T7B8 1368 aa24.4■■□□□ 1.5
NME3-205ENST00000563854 TNNT2P45379 298 aaPredicted RBP24.38■■□□□ 1.49
NME3-205ENST00000563854 SPON1Q9HCB6 807 aa24.38■■□□□ 1.49
NME3-205ENST00000563854 TATP17735 454 aaPredicted RBP24.37■■□□□ 1.49
NME3-205ENST00000563854 PPP1R1BQ9UD71 204 aaPredicted RBP24.37■■□□□ 1.49
NME3-205ENST00000563854 PDGFDQ9GZP0 370 aaPredicted RBP24.36■■□□□ 1.49
NME3-205ENST00000563854 CASZ1Q86V15 1759 aa24.36■■□□□ 1.49
NME3-205ENST00000563854 ANKRD26Q9UPS8 1709 aa24.35■■□□□ 1.49
NME3-205ENST00000563854 PRIM1P49642 420 aaKnown RBP24.35■■□□□ 1.49
NME3-205ENST00000563854 PANK3Q9H999 370 aa24.35■■□□□ 1.49
NME3-205ENST00000563854 SLC15A2Q16348 729 aa24.34■■□□□ 1.49
NME3-205ENST00000563854 ZBTB7AO95365 584 aa24.33■■□□□ 1.49
NME3-205ENST00000563854 MAP2P11137 1827 aaKnown RBP24.32■■□□□ 1.48
NME3-205ENST00000563854 PAPPAQ13219 1627 aa24.31■■□□□ 1.48
NME3-205ENST00000563854 POLKQ9UBT6 870 aa24.3■■□□□ 1.48
NME3-205ENST00000563854 PCDH11XQ9BZA7 1347 aa24.3■■□□□ 1.48
NME3-205ENST00000563854 PCDH11YQ9BZA8 1340 aa24.3■■□□□ 1.48
NME3-205ENST00000563854 LRRC4BQ9NT99 713 aa24.29■■□□□ 1.48
NME3-205ENST00000563854 WASHC2AQ641Q2 1341 aa24.29■■□□□ 1.48
NME3-205ENST00000563854 NSD2O96028 1365 aa24.29■■□□□ 1.48
NME3-205ENST00000563854 ATF5Q9Y2D1 282 aaPredicted RBP24.28■■□□□ 1.48
NME3-205ENST00000563854 KCNQ4P56696 695 aa24.27■■□□□ 1.48
NME3-205ENST00000563854 ZNF827Q17R98 1081 aa24.27■■□□□ 1.48
NME3-205ENST00000563854 SLC27A3Q5K4L6 730 aa24.25■■□□□ 1.47
NME3-205ENST00000563854 EYA1Q99502 592 aa24.25■■□□□ 1.47
NME3-205ENST00000563854 PKD1L3Q7Z443 1732 aa24.24■■□□□ 1.47
NME3-205ENST00000563854 EIF4A2Q14240 407 aaKnown RBP24.23■■□□□ 1.47
NME3-205ENST00000563854 MORC1Q86VD1 984 aa24.23■■□□□ 1.47
NME3-205ENST00000563854 NCAPD2Q15021 1401 aa24.23■■□□□ 1.47
NME3-205ENST00000563854 CYP27B1O15528 508 aa24.22■■□□□ 1.47
NME3-205ENST00000563854 KNSTRNQ9Y448 316 aa24.22■■□□□ 1.47
NME3-205ENST00000563854 LY75O60449 1722 aa24.21■■□□□ 1.47
NME3-205ENST00000563854 KIF7Q2M1P5 1343 aa24.21■■□□□ 1.47
NME3-205ENST00000563854 MTFR1LQ9H019 292 aa24.21■■□□□ 1.47
NME3-205ENST00000563854 CCNL1Q9UK58 526 aaPredicted RBP24.21■■□□□ 1.47
NME3-205ENST00000563854 SPG7Q9UQ90 795 aa24.21■■□□□ 1.47
NME3-205ENST00000563854 MPRIPQ6WCQ1 1025 aa24.2■■□□□ 1.46
NME3-205ENST00000563854 TOGARAM1Q9Y4F4 1720 aa24.2■■□□□ 1.46
NME3-205ENST00000563854 PTGER2P43116 358 aa24.18■■□□□ 1.46
NME3-205ENST00000563854 AKT1S1Q96B36 256 aa24.18■■□□□ 1.46
NME3-205ENST00000563854 TFCP2L1Q9NZI6 479 aa24.18■■□□□ 1.46
NME3-205ENST00000563854 TUBGCP6Q96RT7 1819 aa24.15■■□□□ 1.46
NME3-205ENST00000563854 PALLDQ8WX93 1383 aa24.15■■□□□ 1.46
NME3-205ENST00000563854 ITGB4P16144 1822 aa24.14■■□□□ 1.45
NME3-205ENST00000563854 PNPLA7Q6ZV29 1317 aa24.13■■□□□ 1.45
NME3-205ENST00000563854 IGSF1Q8N6C5 1336 aa24.13■■□□□ 1.45
NME3-205ENST00000563854 QSER1Q2KHR3 1735 aa24.13■■□□□ 1.45
NME3-205ENST00000563854 DCAF8L1A6NGE4 600 aa24.12■■□□□ 1.45
NME3-205ENST00000563854 MSH5O43196 834 aa24.12■■□□□ 1.45
NME3-205ENST00000563854 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.11■■□□□ 1.45
NME3-205ENST00000563854 C5P01031 1676 aa24.11■■□□□ 1.45
NME3-205ENST00000563854 PHKG2P15735 406 aa24.1■■□□□ 1.45
NME3-205ENST00000563854 IFNL2Q8IZJ0 200 aa24.1■■□□□ 1.45
NME3-205ENST00000563854 FHDC1Q9C0D6 1143 aaPredicted RBP24.1■■□□□ 1.45
NME3-205ENST00000563854 CNGB1Q14028 1251 aaPredicted RBP24.09■■□□□ 1.45
NME3-205ENST00000563854 NKX1-1Q15270 411 aaPredicted RBP24.09■■□□□ 1.45
NME3-205ENST00000563854 AMER1Q5JTC6 1135 aaPredicted RBP24.09■■□□□ 1.45
NME3-205ENST00000563854 PIGBQ92521 554 aa24.09■■□□□ 1.45
NME3-205ENST00000563854 ARXQ96QS3 562 aa24.09■■□□□ 1.45
NME3-205ENST00000563854 SGIP1Q9BQI5 828 aa24.09■■□□□ 1.45
NME3-205ENST00000563854 TMOD3Q9NYL9 352 aa24.09■■□□□ 1.45
NME3-205ENST00000563854 KLHL34Q8N239 644 aa24.08■■□□□ 1.45
NME3-205ENST00000563854 SMARCC1Q92922 1105 aaPredicted RBP24.08■■□□□ 1.45
NME3-205ENST00000563854 CC2D1BQ5T0F9 858 aaKnown RBP24.07■■□□□ 1.44
NME3-205ENST00000563854 AEBP1Q8IUX7 1158 aa24.06■■□□□ 1.44
NME3-205ENST00000563854 SLC16A10Q8TF71 515 aa24.06■■□□□ 1.44
NME3-205ENST00000563854 POLD1P28340 1107 aa24.05■■□□□ 1.44
NME3-205ENST00000563854 SYT17Q9BSW7 474 aa24.05■■□□□ 1.44
NME3-205ENST00000563854 PLEKHO1Q53GL0 409 aaPredicted RBP24.04■■□□□ 1.44
NME3-205ENST00000563854 ZNF530Q6P9A1 599 aaPredicted RBP24.04■■□□□ 1.44
NME3-205ENST00000563854 TAF1LQ8IZX4 1826 aa24.03■■□□□ 1.44
NME3-205ENST00000563854 SULT6B1Q6IMI4 303 aa24.03■■□□□ 1.44
NME3-205ENST00000563854 COL23A1Q86Y22 540 aaPredicted RBP24.03■■□□□ 1.44
NME3-205ENST00000563854 PLEKHG2Q9H7P9 1386 aa24.03■■□□□ 1.44
NME3-205ENST00000563854 C4BP0C0L5 1744 aa24.02■■□□□ 1.44
NME3-205ENST00000563854 AK7Q96M32 723 aa24.02■■□□□ 1.44
NME3-205ENST00000563854 ASAP1Q9ULH1 1129 aa24.02■■□□□ 1.44
NME3-205ENST00000563854 MTHFSP49914 203 aa24.01■■□□□ 1.43
NME3-205ENST00000563854 MSL1Q68DK7 614 aa24.01■■□□□ 1.43
NME3-205ENST00000563854 LOC102724428A0A0B4J2F2 783 aa24■■□□□ 1.43
NME3-205ENST00000563854 IL13P35225 146 aa24■■□□□ 1.43
NME3-205ENST00000563854 SIK1P57059 783 aa24■■□□□ 1.43
NME3-205ENST00000563854 PER1O15534 1290 aaPredicted RBP23.99■■□□□ 1.43
NME3-205ENST00000563854 PHF14O94880 888 aa23.99■■□□□ 1.43
NME3-205ENST00000563854 HSP90AB1P08238 724 aaKnown RBP23.99■■□□□ 1.43
NME3-205ENST00000563854 YY1P25490 414 aa23.99■■□□□ 1.43
NME3-205ENST00000563854 HMGB2P26583 209 aaKnown RBP23.99■■□□□ 1.43
NME3-205ENST00000563854 AMOTQ4VCS5 1084 aa23.99■■□□□ 1.43
NME3-205ENST00000563854 C1orf141Q5JVX7 400 aa23.99■■□□□ 1.43
NME3-205ENST00000563854 DCAF5Q96JK2 942 aa23.98■■□□□ 1.43
NME3-205ENST00000563854 KDM6AO15550 1401 aaPredicted RBP23.97■■□□□ 1.43
NME3-205ENST00000563854 ATG3Q9NT62 314 aa23.97■■□□□ 1.43
NME3-205ENST00000563854 COL24A1Q17RW2 1714 aa23.96■■□□□ 1.43
NME3-205ENST00000563854 ATP6V1AP38606 617 aa23.96■■□□□ 1.43
NME3-205ENST00000563854 SMIM5Q71RC9 77 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms