RNA–Protein interactions for RNA: ENST00000561954.1

IFT140-205, Transcript of intraflagellar transport 140, humanhuman

TSL 3

Gene IFT140, Length 826 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-205ENST00000561954 PCDH11XQ9BZA7 1347 aa18.75■□□□□ 0.59
IFT140-205ENST00000561954 PCDH11YQ9BZA8 1340 aa18.75■□□□□ 0.59
IFT140-205ENST00000561954 BCL9O00512 1426 aa18.75■□□□□ 0.59
IFT140-205ENST00000561954 U2SURPO15042 1029 aaKnown RBP18.74■□□□□ 0.59
IFT140-205ENST00000561954 FAM196AQ6ZSG2 479 aa18.74■□□□□ 0.59
IFT140-205ENST00000561954 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.74■□□□□ 0.59
IFT140-205ENST00000561954 SULT6B1Q6IMI4 303 aa18.73■□□□□ 0.59
IFT140-205ENST00000561954 ZCRB1Q8TBF4 217 aaKnown RBP18.73■□□□□ 0.59
IFT140-205ENST00000561954 SPG7Q9UQ90 795 aa18.73■□□□□ 0.59
IFT140-205ENST00000561954 SHANK3Q9BYB0 1731 aa18.73■□□□□ 0.59
IFT140-205ENST00000561954 SOCS7O14512 581 aa18.72■□□□□ 0.59
IFT140-205ENST00000561954 AEBP1Q8IUX7 1158 aa18.71■□□□□ 0.59
IFT140-205ENST00000561954 AMOTQ4VCS5 1084 aa18.7■□□□□ 0.58
IFT140-205ENST00000561954 MARCH10Q8NA82 808 aaPredicted RBP18.7■□□□□ 0.58
IFT140-205ENST00000561954 CCDC125Q86Z20 511 aa18.69■□□□□ 0.58
IFT140-205ENST00000561954 HMOX1P09601 288 aa18.68■□□□□ 0.58
IFT140-205ENST00000561954 U2AF1L5P0DN76 240 aaPredicted RBP18.68■□□□□ 0.58
IFT140-205ENST00000561954 U2AF1Q01081 240 aaKnown RBP eCLIP18.68■□□□□ 0.58
IFT140-205ENST00000561954 PLEKHO1Q53GL0 409 aaPredicted RBP18.68■□□□□ 0.58
IFT140-205ENST00000561954 DDX54Q8TDD1 881 aaKnown RBP18.68■□□□□ 0.58
IFT140-205ENST00000561954 NHSQ6T4R5 1651 aa18.67■□□□□ 0.58
IFT140-205ENST00000561954 SF3B2Q13435 895 aaKnown RBP18.67■□□□□ 0.58
IFT140-205ENST00000561954 FAM182BQ5T319 152 aa18.67■□□□□ 0.58
IFT140-205ENST00000561954 TNS1Q9HBL0 1735 aaKnown RBP18.66■□□□□ 0.58
IFT140-205ENST00000561954 WDR43Q15061 677 aaKnown RBP eCLIP18.65■□□□□ 0.58
IFT140-205ENST00000561954 UPF1Q92900 1129 aaKnown RBP eCLIP18.65■□□□□ 0.58
IFT140-205ENST00000561954 DOT1LQ8TEK3 1739 aa18.65■□□□□ 0.58
IFT140-205ENST00000561954 FCHSD2O94868 740 aa18.64■□□□□ 0.57
IFT140-205ENST00000561954 NEFMP07197 916 aa18.64■□□□□ 0.57
IFT140-205ENST00000561954 HSP90AB1P08238 724 aaKnown RBP18.64■□□□□ 0.57
IFT140-205ENST00000561954 C1orf141Q5JVX7 400 aa18.64■□□□□ 0.57
IFT140-205ENST00000561954 IFNL2Q8IZJ0 200 aa18.64■□□□□ 0.57
IFT140-205ENST00000561954 RSPH6AQ9H0K4 717 aa18.64■□□□□ 0.57
IFT140-205ENST00000561954 PNNQ9H307 717 aaKnown RBP18.64■□□□□ 0.57
IFT140-205ENST00000561954 CYP27B1O15528 508 aa18.63■□□□□ 0.57
IFT140-205ENST00000561954 ZNF530Q6P9A1 599 aaPredicted RBP18.63■□□□□ 0.57
IFT140-205ENST00000561954 PHKG2P15735 406 aa18.62■□□□□ 0.57
IFT140-205ENST00000561954 PRKAR2BP31323 418 aa18.62■□□□□ 0.57
IFT140-205ENST00000561954 GAS2L2Q8NHY3 880 aa18.62■□□□□ 0.57
IFT140-205ENST00000561954 BCL11BQ9C0K0 894 aaPredicted RBP18.61■□□□□ 0.57
IFT140-205ENST00000561954 SBF2Q86WG5 1849 aa18.6■□□□□ 0.57
IFT140-205ENST00000561954 RGPD3A6NKT7 1758 aaPredicted RBP18.6■□□□□ 0.57
IFT140-205ENST00000561954 RGPD4Q7Z3J3 1758 aa18.6■□□□□ 0.57
IFT140-205ENST00000561954 TRIM37O94972 964 aa18.6■□□□□ 0.57
IFT140-205ENST00000561954 NKX1-1Q15270 411 aaPredicted RBP18.6■□□□□ 0.57
IFT140-205ENST00000561954 MAPK8IP3Q9UPT6 1336 aa18.59■□□□□ 0.57
IFT140-205ENST00000561954 BAG6P46379 1132 aa18.59■□□□□ 0.57
IFT140-205ENST00000561954 AKAP4Q5JQC9 854 aa18.59■□□□□ 0.57
IFT140-205ENST00000561954 TOGARAM1Q9Y4F4 1720 aa18.59■□□□□ 0.57
IFT140-205ENST00000561954 DCAF5Q96JK2 942 aa18.58■□□□□ 0.56
IFT140-205ENST00000561954 MRS2Q9HD23 443 aa18.58■□□□□ 0.56
IFT140-205ENST00000561954 MAP3K5Q99683 1374 aa18.57■□□□□ 0.56
IFT140-205ENST00000561954 ACSBG1Q96GR2 724 aa18.57■□□□□ 0.56
IFT140-205ENST00000561954 MTHFSDQ2M296 383 aaKnown RBP18.56■□□□□ 0.56
IFT140-205ENST00000561954 DIEXFQ68CQ4 756 aaKnown RBP18.56■□□□□ 0.56
IFT140-205ENST00000561954 SYTL4Q96C24 671 aaPredicted RBP18.56■□□□□ 0.56
IFT140-205ENST00000561954 KDM6AO15550 1401 aaPredicted RBP18.56■□□□□ 0.56
IFT140-205ENST00000561954 MRC1P22897 1456 aa18.55■□□□□ 0.56
IFT140-205ENST00000561954 ADAMTS7Q9UKP4 1686 aa18.54■□□□□ 0.56
IFT140-205ENST00000561954 BTAF1O14981 1849 aa18.54■□□□□ 0.56
IFT140-205ENST00000561954 APBA3O96018 575 aa18.54■□□□□ 0.56
IFT140-205ENST00000561954 ERVV-2B6SEH9 535 aa18.53■□□□□ 0.56
IFT140-205ENST00000561954 PRIM1P49642 420 aaKnown RBP18.53■□□□□ 0.56
IFT140-205ENST00000561954 TMOD3Q9NYL9 352 aa18.53■□□□□ 0.56
IFT140-205ENST00000561954 GNAT3A8MTJ3 354 aa18.52■□□□□ 0.56
IFT140-205ENST00000561954 KCNQ2O43526 872 aa18.52■□□□□ 0.56
IFT140-205ENST00000561954 PHACTR3Q96KR7 559 aa18.52■□□□□ 0.56
IFT140-205ENST00000561954 PLEKHF1Q96S99 279 aa18.52■□□□□ 0.56
IFT140-205ENST00000561954 SCN11AQ9UI33 1791 aa18.51■□□□□ 0.55
IFT140-205ENST00000561954 PLSCR1O15162 318 aa18.5■□□□□ 0.55
IFT140-205ENST00000561954 MPRIPQ6WCQ1 1025 aa18.5■□□□□ 0.55
IFT140-205ENST00000561954 RTF1Q92541 710 aaKnown RBP18.5■□□□□ 0.55
IFT140-205ENST00000561954 RUNDC1Q96C34 613 aa18.5■□□□□ 0.55
IFT140-205ENST00000561954 ADAMTS8Q9UP79 889 aa18.5■□□□□ 0.55
IFT140-205ENST00000561954 RREB1Q92766 1687 aa18.5■□□□□ 0.55
IFT140-205ENST00000561954 HTATSF1O43719 755 aaKnown RBP18.49■□□□□ 0.55
IFT140-205ENST00000561954 NFE2L2Q16236 605 aa18.49■□□□□ 0.55
IFT140-205ENST00000561954 DEFB132Q7Z7B7 95 aa18.49■□□□□ 0.55
IFT140-205ENST00000561954 ITGB4P16144 1822 aa18.49■□□□□ 0.55
IFT140-205ENST00000561954 CCER2I3L3R5 266 aa18.48■□□□□ 0.55
IFT140-205ENST00000561954 CABP4P57796 275 aa18.48■□□□□ 0.55
IFT140-205ENST00000561954 LMOD3Q0VAK6 560 aa18.48■□□□□ 0.55
IFT140-205ENST00000561954 SMARCC1Q92922 1105 aaPredicted RBP18.48■□□□□ 0.55
IFT140-205ENST00000561954 CEMIPQ8WUJ3 1361 aa18.47■□□□□ 0.55
IFT140-205ENST00000561954 RNMTO43148 476 aaKnown RBP18.47■□□□□ 0.55
IFT140-205ENST00000561954 EN1Q05925 392 aaPredicted RBP18.47■□□□□ 0.55
IFT140-205ENST00000561954 CCDC184Q52MB2 194 aa18.47■□□□□ 0.55
IFT140-205ENST00000561954 PTF1AQ7RTS3 328 aa18.47■□□□□ 0.55
IFT140-205ENST00000561954 PNISRQ8TF01 805 aaKnown RBP18.47■□□□□ 0.55
IFT140-205ENST00000561954 PALLDQ8WX93 1383 aa18.46■□□□□ 0.55
IFT140-205ENST00000561954 TEFQ10587 303 aa18.46■□□□□ 0.55
IFT140-205ENST00000561954 PIGBQ92521 554 aa18.46■□□□□ 0.55
IFT140-205ENST00000561954 CAMKK2Q96RR4 588 aa18.46■□□□□ 0.55
IFT140-205ENST00000561954 SLC52A2Q9HAB3 445 aa18.46■□□□□ 0.55
IFT140-205ENST00000561954 HMGB2P26583 209 aaKnown RBP18.45■□□□□ 0.54
IFT140-205ENST00000561954 CCDC146Q8IYE0 955 aa18.45■□□□□ 0.54
IFT140-205ENST00000561954 LY75O60449 1722 aa18.45■□□□□ 0.54
IFT140-205ENST00000561954 PAPPAQ13219 1627 aa18.45■□□□□ 0.54
IFT140-205ENST00000561954 NUP188Q5SRE5 1749 aa18.44■□□□□ 0.54
IFT140-205ENST00000561954 SLC27A3Q5K4L6 730 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms