RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 NOLC1Q14978 699 aaKnown RBP eCLIP20.08■□□□□ 0.8
TPM1-228ENST00000560975 ERC2O15083 957 aa20.07■□□□□ 0.8
TPM1-228ENST00000560975 ADGRB3O60242 1522 aa20.07■□□□□ 0.8
TPM1-228ENST00000560975 GGT6Q6P531 493 aa20.07■□□□□ 0.8
TPM1-228ENST00000560975 TERF2IPQ9NYB0 399 aa20.07■□□□□ 0.8
TPM1-228ENST00000560975 MROH1Q8NDA8 1641 aa20.07■□□□□ 0.8
TPM1-228ENST00000560975 BRD1O95696 1058 aa20.06■□□□□ 0.8
TPM1-228ENST00000560975 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.06■□□□□ 0.8
TPM1-228ENST00000560975 PUS7Q96PZ0 661 aaKnown RBP20.06■□□□□ 0.8
TPM1-228ENST00000560975 LRRC7Q96NW7 1537 aa20.06■□□□□ 0.8
TPM1-228ENST00000560975 PPP4R3BQ5MIZ7 849 aa20.06■□□□□ 0.8
TPM1-228ENST00000560975 SYAP1Q96A49 352 aaPredicted RBP20.06■□□□□ 0.8
TPM1-228ENST00000560975 PLCB2Q00722 1185 aa20.05■□□□□ 0.8
TPM1-228ENST00000560975 PIBF1Q8WXW3 757 aa20.05■□□□□ 0.8
TPM1-228ENST00000560975 REREQ9P2R6 1566 aa20.05■□□□□ 0.8
TPM1-228ENST00000560975 FAM83GA6ND36 823 aa20.05■□□□□ 0.8
TPM1-228ENST00000560975 ANKRD44Q8N8A2 993 aa20.05■□□□□ 0.8
TPM1-228ENST00000560975 IFT57Q9NWB7 429 aa20.05■□□□□ 0.8
TPM1-228ENST00000560975 KNDC1Q76NI1 1749 aa20.04■□□□□ 0.8
TPM1-228ENST00000560975 DCTN1Q14203 1278 aa20.04■□□□□ 0.8
TPM1-228ENST00000560975 ATP2B3Q16720 1220 aa20.04■□□□□ 0.8
TPM1-228ENST00000560975 TSHZ3Q63HK5 1081 aa20.04■□□□□ 0.8
TPM1-228ENST00000560975 ZCCHC11Q5TAX3 1644 aaKnown RBP20.04■□□□□ 0.8
TPM1-228ENST00000560975 GLI2P10070 1586 aa20.03■□□□□ 0.8
TPM1-228ENST00000560975 KRT24Q2M2I5 525 aa20.03■□□□□ 0.8
TPM1-228ENST00000560975 PRIMPOLQ96LW4 560 aa20.03■□□□□ 0.8
TPM1-228ENST00000560975 SPDYE4A6NLX3 237 aa20.03■□□□□ 0.8
TPM1-228ENST00000560975 ADCY5O95622 1261 aa20.03■□□□□ 0.8
TPM1-228ENST00000560975 UTP14CQ5TAP6 766 aaKnown RBP20.03■□□□□ 0.8
TPM1-228ENST00000560975 CEP85Q6P2H3 762 aa20.03■□□□□ 0.8
TPM1-228ENST00000560975 USP48Q86UV5 1035 aa20.02■□□□□ 0.8
TPM1-228ENST00000560975 HMGN5P82970 282 aaKnown RBP20.02■□□□□ 0.8
TPM1-228ENST00000560975 KIF3AQ9Y496 699 aa20.02■□□□□ 0.8
TPM1-228ENST00000560975 FAM135BQ49AJ0 1406 aa20.02■□□□□ 0.8
TPM1-228ENST00000560975 PALD1Q9ULE6 856 aa20.01■□□□□ 0.79
TPM1-228ENST00000560975 PPLO60437 1756 aa20.01■□□□□ 0.79
TPM1-228ENST00000560975 FANCAO15360 1455 aa20.01■□□□□ 0.79
TPM1-228ENST00000560975 PNPLA6Q8IY17 1366 aa20.01■□□□□ 0.79
TPM1-228ENST00000560975 POLKQ9UBT6 870 aa20.01■□□□□ 0.79
TPM1-228ENST00000560975 ZNF853P0CG23 659 aa20■□□□□ 0.79
TPM1-228ENST00000560975 HCLS1P14317 486 aaPredicted RBP20■□□□□ 0.79
TPM1-228ENST00000560975 PHF14O94880 888 aa20■□□□□ 0.79
TPM1-228ENST00000560975 HDGFL2Q7Z4V5 671 aaPredicted RBP20■□□□□ 0.79
TPM1-228ENST00000560975 MEIS3Q99687 375 aa20■□□□□ 0.79
TPM1-228ENST00000560975 UPF3BQ9BZI7 483 aaKnown RBP20■□□□□ 0.79
TPM1-228ENST00000560975 BCL2L12Q9HB09 334 aa19.99■□□□□ 0.79
TPM1-228ENST00000560975 RPAP2Q8IXW5 612 aaPredicted RBP19.99■□□□□ 0.79
TPM1-228ENST00000560975 CABP1Q9NZU7 370 aa19.99■□□□□ 0.79
TPM1-228ENST00000560975 NPATQ14207 1427 aa19.98■□□□□ 0.79
TPM1-228ENST00000560975 ATP10DQ9P241 1426 aa19.98■□□□□ 0.79
TPM1-228ENST00000560975 VGFO15240 615 aaPredicted RBP19.98■□□□□ 0.79
TPM1-228ENST00000560975 IGSF3O75054 1194 aa19.98■□□□□ 0.79
TPM1-228ENST00000560975 ARHGEF28Q8N1W1 1705 aaKnown RBP19.98■□□□□ 0.79
TPM1-228ENST00000560975 PRAM1Q96QH2 718 aa19.97■□□□□ 0.79
TPM1-228ENST00000560975 EMILIN1Q9Y6C2 1016 aa19.97■□□□□ 0.79
TPM1-228ENST00000560975 RPGRIP1LQ68CZ1 1315 aa19.97■□□□□ 0.79
TPM1-228ENST00000560975 ANO2Q9NQ90 1003 aa19.97■□□□□ 0.79
TPM1-228ENST00000560975 CUL4AQ13619 759 aa19.97■□□□□ 0.79
TPM1-228ENST00000560975 GTF2F1P35269 517 aaKnown RBP eCLIP19.96■□□□□ 0.79
TPM1-228ENST00000560975 CAMSAP1Q5T5Y3 1602 aa19.96■□□□□ 0.79
TPM1-228ENST00000560975 MSH6P52701 1360 aa19.96■□□□□ 0.79
TPM1-228ENST00000560975 PDE1AP54750 535 aa19.96■□□□□ 0.79
TPM1-228ENST00000560975 FKBP5Q13451 457 aaPredicted RBP19.95■□□□□ 0.78
TPM1-228ENST00000560975 PDCL2Q8N4E4 241 aa19.95■□□□□ 0.78
TPM1-228ENST00000560975 FAM184AQ8NB25 1140 aa19.95■□□□□ 0.78
TPM1-228ENST00000560975 MCM2P49736 904 aa19.95■□□□□ 0.78
TPM1-228ENST00000560975 UVSSAQ2YD98 709 aa19.95■□□□□ 0.78
TPM1-228ENST00000560975 RILPL2Q969X0 211 aa19.94■□□□□ 0.78
TPM1-228ENST00000560975 CNPY2Q9Y2B0 182 aa19.94■□□□□ 0.78
TPM1-228ENST00000560975 RTL1A6NKG5 1358 aa19.94■□□□□ 0.78
TPM1-228ENST00000560975 MCCP23508 829 aa19.93■□□□□ 0.78
TPM1-228ENST00000560975 ESYT1Q9BSJ8 1104 aa19.93■□□□□ 0.78
TPM1-228ENST00000560975 CD163L1Q9NR16 1453 aa19.93■□□□□ 0.78
TPM1-228ENST00000560975 U2AF2P26368 475 aaKnown RBP eCLIP19.93■□□□□ 0.784e-8■■■■■ 35.5
TPM1-228ENST00000560975 CCDC183Q5T5S1 534 aa19.93■□□□□ 0.78
TPM1-228ENST00000560975 SPC24Q8NBT2 197 aa19.93■□□□□ 0.78
TPM1-228ENST00000560975 CHD1O14646 1710 aa19.93■□□□□ 0.78
TPM1-228ENST00000560975 TRIM6-TRIM34B2RNG4 842 aa19.93■□□□□ 0.78
TPM1-228ENST00000560975 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.93■□□□□ 0.78
TPM1-228ENST00000560975 GTPBP4Q9BZE4 634 aaKnown RBP19.93■□□□□ 0.78
TPM1-228ENST00000560975 EXOC6BQ9Y2D4 811 aa19.93■□□□□ 0.78
TPM1-228ENST00000560975 RIOK3O14730 519 aaKnown RBP19.92■□□□□ 0.78
TPM1-228ENST00000560975 SRCIN1Q9C0H9 1055 aa19.92■□□□□ 0.78
TPM1-228ENST00000560975 PYCARDQ9ULZ3 195 aa19.92■□□□□ 0.78
TPM1-228ENST00000560975 SLC4A10Q6U841 1118 aa19.92■□□□□ 0.78
TPM1-228ENST00000560975 CDK19Q9BWU1 502 aa19.92■□□□□ 0.78
TPM1-228ENST00000560975 SPTLC3Q9NUV7 552 aa19.92■□□□□ 0.78
TPM1-228ENST00000560975 DTNBO60941 627 aa19.91■□□□□ 0.78
TPM1-228ENST00000560975 INTS4Q96HW7 963 aaKnown RBP19.91■□□□□ 0.78
TPM1-228ENST00000560975 WDR33Q9C0J8 1336 aaKnown RBP19.91■□□□□ 0.78
TPM1-228ENST00000560975 KIF24Q5T7B8 1368 aa19.91■□□□□ 0.78
TPM1-228ENST00000560975 ARHGEF40Q8TER5 1519 aa19.91■□□□□ 0.78
TPM1-228ENST00000560975 TCHHQ07283 1943 aa19.91■□□□□ 0.78
TPM1-228ENST00000560975 LARP6Q9BRS8 491 aaKnown RBP19.91■□□□□ 0.78
TPM1-228ENST00000560975 KDM4AO75164 1064 aa19.9■□□□□ 0.78
TPM1-228ENST00000560975 ZFYVE9O95405 1425 aa19.9■□□□□ 0.78
TPM1-228ENST00000560975 GIMAP6Q6P9H5 292 aa19.9■□□□□ 0.78
TPM1-228ENST00000560975 MX1P20591 662 aa19.89■□□□□ 0.78
TPM1-228ENST00000560975 RIMS2Q9UQ26 1411 aa19.89■□□□□ 0.77
TPM1-228ENST00000560975 FIBPO43427 364 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms