RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 NLGN2Q8NFZ4 835 aa26.27■■□□□ 1.8
TPM1-226ENST00000560959 LTV1Q96GA3 475 aaPredicted RBP26.27■■□□□ 1.8
TPM1-226ENST00000560959 FAM208AQ9UK61 1670 aaKnown RBP26.26■■□□□ 1.79
TPM1-226ENST00000560959 NSD2O96028 1365 aa26.26■■□□□ 1.79
TPM1-226ENST00000560959 PELP1Q8IZL8 1130 aaKnown RBP26.26■■□□□ 1.79
TPM1-226ENST00000560959 HOXC9P31274 260 aa26.25■■□□□ 1.79
TPM1-226ENST00000560959 KCNQ4P56696 695 aa26.25■■□□□ 1.79
TPM1-226ENST00000560959 CCNL1Q9UK58 526 aaPredicted RBP26.25■■□□□ 1.79
TPM1-226ENST00000560959 MAP3K19Q56UN5 1328 aa26.24■■□□□ 1.79
TPM1-226ENST00000560959 COG3Q96JB2 828 aa26.24■■□□□ 1.79
TPM1-226ENST00000560959 CGNL1Q0VF96 1302 aa26.23■■□□□ 1.79
TPM1-226ENST00000560959 SLC24A1O60721 1099 aa26.23■■□□□ 1.79
TPM1-226ENST00000560959 AMPHP49418 695 aa26.23■■□□□ 1.79
TPM1-226ENST00000560959 COL23A1Q86Y22 540 aaPredicted RBP26.21■■□□□ 1.79
TPM1-226ENST00000560959 LY75O60449 1722 aa26.2■■□□□ 1.79
TPM1-226ENST00000560959 YBX3P16989 372 aaKnown RBP eCLIP26.2■■□□□ 1.78
TPM1-226ENST00000560959 USP47Q96K76 1375 aa26.2■■□□□ 1.78
TPM1-226ENST00000560959 IFFO2Q5TF58 517 aa26.18■■□□□ 1.78
TPM1-226ENST00000560959 FLAD1Q8NFF5 587 aa26.18■■□□□ 1.78
TPM1-226ENST00000560959 MSH5O43196 834 aa26.17■■□□□ 1.78
TPM1-226ENST00000560959 CD2APQ9Y5K6 639 aa26.17■■□□□ 1.78
TPM1-226ENST00000560959 RTL1A6NKG5 1358 aa26.17■■□□□ 1.78
TPM1-226ENST00000560959 SHANK3Q9BYB0 1731 aa26.17■■□□□ 1.78
TPM1-226ENST00000560959 CEP350Q5VT06 3117 aa26.17■■□□□ 1.78
TPM1-226ENST00000560959 TUBGCP6Q96RT7 1819 aa26.16■■□□□ 1.78
TPM1-226ENST00000560959 MEGF6O75095 1541 aa26.15■■□□□ 1.78
TPM1-226ENST00000560959 DOT1LQ8TEK3 1739 aa26.14■■□□□ 1.78
TPM1-226ENST00000560959 NBPF6Q5VWK0 638 aa26.14■■□□□ 1.78
TPM1-226ENST00000560959 NBPF4Q96M43 638 aa26.14■■□□□ 1.78
TPM1-226ENST00000560959 TESK2Q96S53 571 aa26.14■■□□□ 1.78
TPM1-226ENST00000560959 FBLN1P23142 703 aa26.13■■□□□ 1.77
TPM1-226ENST00000560959 RAPGEF4Q8WZA2 1011 aa26.13■■□□□ 1.77
TPM1-226ENST00000560959 TATP17735 454 aaPredicted RBP26.09■■□□□ 1.77
TPM1-226ENST00000560959 ST20-MTHFSA0A0A6YYL1 179 aa26.08■■□□□ 1.77
TPM1-226ENST00000560959 MSL1Q68DK7 614 aa26.08■■□□□ 1.77
TPM1-226ENST00000560959 SMG6Q86US8 1419 aaKnown RBP26.07■■□□□ 1.76
TPM1-226ENST00000560959 ATP10DQ9P241 1426 aa26.07■■□□□ 1.76
TPM1-226ENST00000560959 FYB1O15117 783 aa26.07■■□□□ 1.76
TPM1-226ENST00000560959 RRS1Q15050 365 aaKnown RBP26.07■■□□□ 1.76
TPM1-226ENST00000560959 PCDH11XQ9BZA7 1347 aa26.07■■□□□ 1.76
TPM1-226ENST00000560959 PCDH11YQ9BZA8 1340 aa26.07■■□□□ 1.76
TPM1-226ENST00000560959 SMARCC1Q92922 1105 aaPredicted RBP26.05■■□□□ 1.76
TPM1-226ENST00000560959 GPBP1L1Q9HC44 474 aaPredicted RBP26.05■■□□□ 1.76
TPM1-226ENST00000560959 KIF24Q5T7B8 1368 aa26.05■■□□□ 1.76
TPM1-226ENST00000560959 PALLDQ8WX93 1383 aa26.05■■□□□ 1.76
TPM1-226ENST00000560959 TONSLQ96HA7 1378 aa26.05■■□□□ 1.76
TPM1-226ENST00000560959 USHBP1Q8N6Y0 703 aa26.04■■□□□ 1.76
TPM1-226ENST00000560959 INSRP06213 1382 aa26.04■■□□□ 1.76
TPM1-226ENST00000560959 RGPD2P0DJD1 1756 aa26.03■■□□□ 1.76
TPM1-226ENST00000560959 ADCY9O60503 1353 aa26.03■■□□□ 1.76
TPM1-226ENST00000560959 MPRIPQ6WCQ1 1025 aa26.02■■□□□ 1.76
TPM1-226ENST00000560959 GGNBP2Q9H3C7 697 aa26.01■■□□□ 1.75
TPM1-226ENST00000560959 CYP27B1O15528 508 aa26■■□□□ 1.75
TPM1-226ENST00000560959 HSP90AB2PQ58FF8 381 aa26■■□□□ 1.75
TPM1-226ENST00000560959 C5P01031 1676 aa25.99■■□□□ 1.75
TPM1-226ENST00000560959 NSD3Q9BZ95 1437 aa25.99■■□□□ 1.75
TPM1-226ENST00000560959 HSPA6P17066 643 aa25.99■■□□□ 1.75
TPM1-226ENST00000560959 AK7Q96M32 723 aa25.99■■□□□ 1.75
TPM1-226ENST00000560959 FLT4P35916 1363 aa25.98■■□□□ 1.75
TPM1-226ENST00000560959 NKX1-1Q15270 411 aaPredicted RBP25.98■■□□□ 1.75
TPM1-226ENST00000560959 SSFA2P28290 1259 aa25.96■■□□□ 1.75
TPM1-226ENST00000560959 TMF1P82094 1093 aa25.95■■□□□ 1.74
TPM1-226ENST00000560959 IGSF1Q8N6C5 1336 aa25.94■■□□□ 1.74
TPM1-226ENST00000560959 TAF1LQ8IZX4 1826 aa25.94■■□□□ 1.74
TPM1-226ENST00000560959 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.94■■□□□ 1.74
TPM1-226ENST00000560959 PIGBQ92521 554 aa25.94■■□□□ 1.74
TPM1-226ENST00000560959 AMIGO3Q86WK7 504 aa25.93■■□□□ 1.74
TPM1-226ENST00000560959 C4BP0C0L5 1744 aa25.93■■□□□ 1.74
TPM1-226ENST00000560959 CDCA8Q53HL2 280 aa25.91■■□□□ 1.74
TPM1-226ENST00000560959 SPG7Q9UQ90 795 aa25.91■■□□□ 1.74
TPM1-226ENST00000560959 LOC102724428A0A0B4J2F2 783 aa25.9■■□□□ 1.74
TPM1-226ENST00000560959 SIK1P57059 783 aa25.9■■□□□ 1.74
TPM1-226ENST00000560959 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.9■■□□□ 1.745e-8■■■■□ 19.9
TPM1-226ENST00000560959 PHF14O94880 888 aa25.89■■□□□ 1.74
TPM1-226ENST00000560959 NCAPD2Q15021 1401 aa25.88■■□□□ 1.73
TPM1-226ENST00000560959 ZNF526Q8TF50 670 aaPredicted RBP25.88■■□□□ 1.73
TPM1-226ENST00000560959 KIF3CO14782 793 aa25.86■■□□□ 1.73
TPM1-226ENST00000560959 LINC00116Q8NCU8 138 aa25.86■■□□□ 1.73
TPM1-226ENST00000560959 UBR3Q6ZT12 1888 aa25.85■■□□□ 1.73
TPM1-226ENST00000560959 TOGARAM1Q9Y4F4 1720 aa25.85■■□□□ 1.73
TPM1-226ENST00000560959 PKD1L3Q7Z443 1732 aa25.84■■□□□ 1.73
TPM1-226ENST00000560959 TMOD3Q9NYL9 352 aa25.84■■□□□ 1.73
TPM1-226ENST00000560959 EMILIN1Q9Y6C2 1016 aa25.84■■□□□ 1.73
TPM1-226ENST00000560959 ITGB4P16144 1822 aa25.84■■□□□ 1.73
TPM1-226ENST00000560959 TGFB2P61812 414 aa25.83■■□□□ 1.73
TPM1-226ENST00000560959 SMIM5Q71RC9 77 aa25.83■■□□□ 1.73
TPM1-226ENST00000560959 WASHC2AQ641Q2 1341 aa25.83■■□□□ 1.73
TPM1-226ENST00000560959 MAP2P11137 1827 aaKnown RBP25.81■■□□□ 1.72
TPM1-226ENST00000560959 GNPATO15228 680 aa25.81■■□□□ 1.72
TPM1-226ENST00000560959 ATP6V1AP38606 617 aa25.81■■□□□ 1.72
TPM1-226ENST00000560959 ITPK1Q13572 414 aa25.81■■□□□ 1.72
TPM1-226ENST00000560959 IFNL2Q8IZJ0 200 aa25.81■■□□□ 1.72
TPM1-226ENST00000560959 CARD14Q9BXL6 1004 aa25.81■■□□□ 1.72
TPM1-226ENST00000560959 ASAP1Q9ULH1 1129 aa25.81■■□□□ 1.72
TPM1-226ENST00000560959 CICQ96RK0 1608 aaPredicted RBP25.79■■□□□ 1.72
TPM1-226ENST00000560959 MMP10P09238 476 aa25.79■■□□□ 1.72
TPM1-226ENST00000560959 NLGN1Q8N2Q7 840 aa25.79■■□□□ 1.72
TPM1-226ENST00000560959 EYA1Q99502 592 aa25.79■■□□□ 1.72
TPM1-226ENST00000560959 WWC3Q9ULE0 1092 aa25.79■■□□□ 1.72
TPM1-226ENST00000560959 PLEKHG2Q9H7P9 1386 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms