RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 PANK1Q8TE04 598 aa16.58■□□□□ 0.24
SNX1-211ENST00000560829 AXIN2Q9Y2T1 843 aa16.58■□□□□ 0.24
SNX1-211ENST00000560829 KIAA0232Q92628 1395 aa16.58■□□□□ 0.24
SNX1-211ENST00000560829 GNAT3A8MTJ3 354 aa16.57■□□□□ 0.24
SNX1-211ENST00000560829 USHBP1Q8N6Y0 703 aa16.57■□□□□ 0.24
SNX1-211ENST00000560829 CPDO75976 1380 aa16.57■□□□□ 0.24
SNX1-211ENST00000560829 MAP3K5Q99683 1374 aa16.57■□□□□ 0.24
SNX1-211ENST00000560829 RLBP1P12271 317 aa16.56■□□□□ 0.24
SNX1-211ENST00000560829 TWISTNBQ3B726 338 aaPredicted RBP16.56■□□□□ 0.24
SNX1-211ENST00000560829 TSPYL6Q8N831 410 aa16.56■□□□□ 0.24
SNX1-211ENST00000560829 ERBB3P21860 1342 aa16.56■□□□□ 0.24
SNX1-211ENST00000560829 KDM2BQ8NHM5 1336 aa16.56■□□□□ 0.24
SNX1-211ENST00000560829 LRRC37A3O60309 1634 aa16.56■□□□□ 0.24
SNX1-211ENST00000560829 HAP1P54257 671 aaPredicted RBP16.56■□□□□ 0.24
SNX1-211ENST00000560829 ATF7IPQ6VMQ6 1270 aa16.56■□□□□ 0.24
SNX1-211ENST00000560829 C8orf58Q8NAV2 365 aa16.56■□□□□ 0.24
SNX1-211ENST00000560829 LRRC59Q96AG4 307 aaKnown RBP16.56■□□□□ 0.24
SNX1-211ENST00000560829 COG6Q9Y2V7 657 aa16.56■□□□□ 0.24
SNX1-211ENST00000560829 IPO8O15397 1037 aaKnown RBP16.55■□□□□ 0.24
SNX1-211ENST00000560829 ZC3H6P61129 1189 aaKnown RBP16.55■□□□□ 0.24
SNX1-211ENST00000560829 CRYBG1Q9Y4K1 1723 aa16.55■□□□□ 0.24
SNX1-211ENST00000560829 TRIM27P14373 513 aa16.54■□□□□ 0.24
SNX1-211ENST00000560829 DZIP1LQ8IYY4 767 aaKnown RBP16.54■□□□□ 0.24
SNX1-211ENST00000560829 BABAM1Q9NWV8 329 aa16.54■□□□□ 0.24
SNX1-211ENST00000560829 TNNQ9UQP3 1299 aa16.54■□□□□ 0.24
SNX1-211ENST00000560829 LMO7Q8WWI1 1683 aa16.54■□□□□ 0.24
SNX1-211ENST00000560829 MRPL50Q8N5N7 158 aaKnown RBP16.54■□□□□ 0.24
SNX1-211ENST00000560829 ARHGAP45Q92619 1136 aa16.54■□□□□ 0.24
SNX1-211ENST00000560829 CLUAP1Q96AJ1 413 aa16.54■□□□□ 0.24
SNX1-211ENST00000560829 NOB1Q9ULX3 412 aaKnown RBP16.54■□□□□ 0.24
SNX1-211ENST00000560829 PLEKHG5O94827 1062 aa16.53■□□□□ 0.24
SNX1-211ENST00000560829 MVPQ14764 893 aaKnown RBP16.53■□□□□ 0.24
SNX1-211ENST00000560829 AMOTQ4VCS5 1084 aa16.53■□□□□ 0.24
SNX1-211ENST00000560829 CENPQQ7L2Z9 268 aaPredicted RBP16.53■□□□□ 0.24
SNX1-211ENST00000560829 CEMIPQ8WUJ3 1361 aa16.53■□□□□ 0.24
SNX1-211ENST00000560829 PLEKHG2Q9H7P9 1386 aa16.53■□□□□ 0.24
SNX1-211ENST00000560829 IL17REQ8NFR9 667 aa16.52■□□□□ 0.24
SNX1-211ENST00000560829 COL18A1P39060 1754 aa16.52■□□□□ 0.24
SNX1-211ENST00000560829 FTSJ3Q8IY81 847 aaKnown RBP16.52■□□□□ 0.23
SNX1-211ENST00000560829 CABLES1Q8TDN4 633 aa16.52■□□□□ 0.23
SNX1-211ENST00000560829 PLEKHO1Q53GL0 409 aaPredicted RBP16.51■□□□□ 0.23
SNX1-211ENST00000560829 ELL2O00472 640 aaPredicted RBP16.5■□□□□ 0.23
SNX1-211ENST00000560829 TSPYL4Q9UJ04 414 aa16.5■□□□□ 0.23
SNX1-211ENST00000560829 NHSL1Q5SYE7 1610 aa16.5■□□□□ 0.23
SNX1-211ENST00000560829 AKAP4Q5JQC9 854 aa16.5■□□□□ 0.23
SNX1-211ENST00000560829 DDX19BQ9UMR2 479 aa16.48■□□□□ 0.23
SNX1-211ENST00000560829 SOS1Q07889 1333 aaPredicted RBP16.48■□□□□ 0.23
SNX1-211ENST00000560829 OVOS2A0A0G2JMS6 1433 aa16.48■□□□□ 0.23
SNX1-211ENST00000560829 TAF7Q15545 349 aaPredicted RBP16.48■□□□□ 0.23
SNX1-211ENST00000560829 LTBP4Q8N2S1 1624 aa16.48■□□□□ 0.23
SNX1-211ENST00000560829 RGPD2P0DJD1 1756 aa16.48■□□□□ 0.23
SNX1-211ENST00000560829 KRT24Q2M2I5 525 aa16.47■□□□□ 0.23
SNX1-211ENST00000560829 ZNF530Q6P9A1 599 aaPredicted RBP16.46■□□□□ 0.23
SNX1-211ENST00000560829 MIS18AQ9NYP9 233 aa16.46■□□□□ 0.23
SNX1-211ENST00000560829 TMEM57Q8N5G2 664 aa16.46■□□□□ 0.22
SNX1-211ENST00000560829 FAM208AQ9UK61 1670 aaKnown RBP16.45■□□□□ 0.22
SNX1-211ENST00000560829 ABCC4O15439 1325 aa16.45■□□□□ 0.22
SNX1-211ENST00000560829 TCERG1O14776 1098 aaKnown RBP16.45■□□□□ 0.22
SNX1-211ENST00000560829 CHRNA2Q15822 529 aa16.45■□□□□ 0.22
SNX1-211ENST00000560829 API5Q9BZZ5 524 aaKnown RBP16.45■□□□□ 0.22
SNX1-211ENST00000560829 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.45■□□□□ 0.225e-7■■□□□ 12.3
SNX1-211ENST00000560829 NLRP2Q9NX02 1062 aa16.44■□□□□ 0.22
SNX1-211ENST00000560829 C1orf141Q5JVX7 400 aa16.44■□□□□ 0.22
SNX1-211ENST00000560829 ITPRIPQ8IWB1 547 aa16.44■□□□□ 0.22
SNX1-211ENST00000560829 RAPGEF4Q8WZA2 1011 aa16.44■□□□□ 0.22
SNX1-211ENST00000560829 PCDHB15Q9Y5E8 787 aa16.44■□□□□ 0.22
SNX1-211ENST00000560829 IGHDP01880 384 aa16.43■□□□□ 0.22
SNX1-211ENST00000560829 LGR6Q9HBX8 967 aa16.43■□□□□ 0.22
SNX1-211ENST00000560829 RGPD5Q99666 1765 aa16.43■□□□□ 0.22
SNX1-211ENST00000560829 PRDM11Q9NQV5 511 aa16.42■□□□□ 0.22
SNX1-211ENST00000560829 PTPRCP08575 1304 aa16.42■□□□□ 0.22
SNX1-211ENST00000560829 RNMTO43148 476 aaKnown RBP16.42■□□□□ 0.22
SNX1-211ENST00000560829 CSB-PGBD3P0DP91 1061 aa16.42■□□□□ 0.22
SNX1-211ENST00000560829 TATP17735 454 aaPredicted RBP16.42■□□□□ 0.22
SNX1-211ENST00000560829 CHMP4BQ9H444 224 aaKnown RBP16.42■□□□□ 0.22
SNX1-211ENST00000560829 ZBTB40Q9NUA8 1239 aa16.42■□□□□ 0.22
SNX1-211ENST00000560829 ADAMTS7Q9UKP4 1686 aa16.41■□□□□ 0.22
SNX1-211ENST00000560829 AHDC1Q5TGY3 1603 aaPredicted RBP16.41■□□□□ 0.22
SNX1-211ENST00000560829 WDR17Q8IZU2 1322 aa16.41■□□□□ 0.22
SNX1-211ENST00000560829 ABCA3Q99758 1704 aa16.41■□□□□ 0.22
SNX1-211ENST00000560829 RBM19Q9Y4C8 960 aaKnown RBP16.41■□□□□ 0.22
SNX1-211ENST00000560829 MEGF6O75095 1541 aa16.41■□□□□ 0.22
SNX1-211ENST00000560829 COL5A2P05997 1499 aaPredicted RBP16.4■□□□□ 0.22
SNX1-211ENST00000560829 RGS12O14924 1447 aa16.4■□□□□ 0.22
SNX1-211ENST00000560829 HOXB7P09629 217 aa16.39■□□□□ 0.22
SNX1-211ENST00000560829 TEFQ10587 303 aa16.39■□□□□ 0.22
SNX1-211ENST00000560829 MPRIPQ6WCQ1 1025 aa16.39■□□□□ 0.22
SNX1-211ENST00000560829 SPG7Q9UQ90 795 aa16.39■□□□□ 0.22
SNX1-211ENST00000560829 RWDD1Q9H446 243 aaPredicted RBP16.39■□□□□ 0.21
SNX1-211ENST00000560829 ZBTB7BO15156 539 aaPredicted RBP16.38■□□□□ 0.21
SNX1-211ENST00000560829 HDAC1Q13547 482 aaPredicted RBP16.38■□□□□ 0.21
SNX1-211ENST00000560829 SLC4A2P04920 1241 aa16.37■□□□□ 0.21
SNX1-211ENST00000560829 EIF4A1P60842 406 aaKnown RBP16.37■□□□□ 0.21
SNX1-211ENST00000560829 CCDC30Q5VVM6 783 aa16.37■□□□□ 0.21
SNX1-211ENST00000560829 INTS3Q68E01 1043 aaKnown RBP16.37■□□□□ 0.21
SNX1-211ENST00000560829 ROBO1Q9Y6N7 1651 aa16.37■□□□□ 0.21
SNX1-211ENST00000560829 PHKG2P15735 406 aa16.37■□□□□ 0.21
SNX1-211ENST00000560829 BTBD11A6QL63 1104 aa16.36■□□□□ 0.21
SNX1-211ENST00000560829 STK31Q9BXU1 1019 aa16.36■□□□□ 0.21
SNX1-211ENST00000560829 CHMP4AQ9BY43 222 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms