RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 AMOTQ4VCS5 1084 aa16.12■□□□□ 0.17
RABGGTA-215ENST00000560207 CCDC125Q86Z20 511 aa16.12■□□□□ 0.17
RABGGTA-215ENST00000560207 SPG7Q9UQ90 795 aa16.12■□□□□ 0.17
RABGGTA-215ENST00000560207 BCL9O00512 1426 aa16.11■□□□□ 0.17
RABGGTA-215ENST00000560207 FAM196AQ6ZSG2 479 aa16.11■□□□□ 0.17
RABGGTA-215ENST00000560207 ZCRB1Q8TBF4 217 aaKnown RBP16.11■□□□□ 0.17
RABGGTA-215ENST00000560207 NEFMP07197 916 aa16.09■□□□□ 0.17
RABGGTA-215ENST00000560207 PLEKHO1Q53GL0 409 aaPredicted RBP16.09■□□□□ 0.17
RABGGTA-215ENST00000560207 SULT6B1Q6IMI4 303 aa16.09■□□□□ 0.17
RABGGTA-215ENST00000560207 PCDH11XQ9BZA7 1347 aa16.09■□□□□ 0.17
RABGGTA-215ENST00000560207 PCDH11YQ9BZA8 1340 aa16.09■□□□□ 0.17
RABGGTA-215ENST00000560207 KAT6BQ8WYB5 2073 aa16.08■□□□□ 0.16
RABGGTA-215ENST00000560207 U2SURPO15042 1029 aaKnown RBP16.08■□□□□ 0.16
RABGGTA-215ENST00000560207 FCHSD2O94868 740 aa16.08■□□□□ 0.16
RABGGTA-215ENST00000560207 MEGF6O75095 1541 aa16.08■□□□□ 0.16
RABGGTA-215ENST00000560207 SBF2Q86WG5 1849 aa16.08■□□□□ 0.16
RABGGTA-215ENST00000560207 HSP90AB1P08238 724 aaKnown RBP16.07■□□□□ 0.16
RABGGTA-215ENST00000560207 USHBP1Q8N6Y0 703 aa16.07■□□□□ 0.16
RABGGTA-215ENST00000560207 SHANK3Q9BYB0 1731 aa16.07■□□□□ 0.16
RABGGTA-215ENST00000560207 U2AF1L5P0DN76 240 aaPredicted RBP16.06■□□□□ 0.16
RABGGTA-215ENST00000560207 U2AF1Q01081 240 aaKnown RBP eCLIP16.06■□□□□ 0.16
RABGGTA-215ENST00000560207 WDR43Q15061 677 aaKnown RBP eCLIP16.04■□□□□ 0.16
RABGGTA-215ENST00000560207 IFNL2Q8IZJ0 200 aa16.04■□□□□ 0.16
RABGGTA-215ENST00000560207 HMGB2P26583 209 aaKnown RBP16.03■□□□□ 0.16
RABGGTA-215ENST00000560207 SF3B2Q13435 895 aaKnown RBP16.03■□□□□ 0.16
RABGGTA-215ENST00000560207 NKX1-1Q15270 411 aaPredicted RBP16.02■□□□□ 0.16
RABGGTA-215ENST00000560207 C1orf141Q5JVX7 400 aa16.02■□□□□ 0.16
RABGGTA-215ENST00000560207 DIEXFQ68CQ4 756 aaKnown RBP16.02■□□□□ 0.16
RABGGTA-215ENST00000560207 MARCH10Q8NA82 808 aaPredicted RBP16.02■□□□□ 0.16
RABGGTA-215ENST00000560207 GAS2L2Q8NHY3 880 aa16.02■□□□□ 0.16
RABGGTA-215ENST00000560207 DDX54Q8TDD1 881 aaKnown RBP16.02■□□□□ 0.16
RABGGTA-215ENST00000560207 HMOX1P09601 288 aa16.01■□□□□ 0.15
RABGGTA-215ENST00000560207 AEBP1Q8IUX7 1158 aa16.01■□□□□ 0.15
RABGGTA-215ENST00000560207 NHSQ6T4R5 1651 aa16.01■□□□□ 0.15
RABGGTA-215ENST00000560207 VIRMAQ69YN4 1812 aaKnown RBP16.01■□□□□ 0.15
RABGGTA-215ENST00000560207 RSPH6AQ9H0K4 717 aa16■□□□□ 0.15
RABGGTA-215ENST00000560207 RGPD3A6NKT7 1758 aaPredicted RBP16■□□□□ 0.15
RABGGTA-215ENST00000560207 RGPD4Q7Z3J3 1758 aa16■□□□□ 0.15
RABGGTA-215ENST00000560207 AKAP4Q5JQC9 854 aa15.99■□□□□ 0.15
RABGGTA-215ENST00000560207 DCAF5Q96JK2 942 aa15.99■□□□□ 0.15
RABGGTA-215ENST00000560207 BCL11BQ9C0K0 894 aaPredicted RBP15.99■□□□□ 0.15
RABGGTA-215ENST00000560207 SCN11AQ9UI33 1791 aa15.99■□□□□ 0.15
RABGGTA-215ENST00000560207 MAPK8IP3Q9UPT6 1336 aa15.98■□□□□ 0.15
RABGGTA-215ENST00000560207 CCER2I3L3R5 266 aa15.98■□□□□ 0.15
RABGGTA-215ENST00000560207 CYP27B1O15528 508 aa15.98■□□□□ 0.15
RABGGTA-215ENST00000560207 PHKG2P15735 406 aa15.98■□□□□ 0.15
RABGGTA-215ENST00000560207 PRKAR2BP31323 418 aa15.98■□□□□ 0.15
RABGGTA-215ENST00000560207 ZNF530Q6P9A1 599 aaPredicted RBP15.98■□□□□ 0.15
RABGGTA-215ENST00000560207 DOT1LQ8TEK3 1739 aa15.98■□□□□ 0.15
RABGGTA-215ENST00000560207 MRS2Q9HD23 443 aa15.98■□□□□ 0.15
RABGGTA-215ENST00000560207 ITGB4P16144 1822 aa15.98■□□□□ 0.15
RABGGTA-215ENST00000560207 HTATSF1O43719 755 aaKnown RBP15.97■□□□□ 0.15
RABGGTA-215ENST00000560207 TNS1Q9HBL0 1735 aaKnown RBP15.97■□□□□ 0.15
RABGGTA-215ENST00000560207 ERVV-2B6SEH9 535 aa15.96■□□□□ 0.15
RABGGTA-215ENST00000560207 UPF1Q92900 1129 aaKnown RBP eCLIP15.96■□□□□ 0.15
RABGGTA-215ENST00000560207 GNAT3A8MTJ3 354 aa15.95■□□□□ 0.14
RABGGTA-215ENST00000560207 BAG6P46379 1132 aa15.95■□□□□ 0.14
RABGGTA-215ENST00000560207 DLG5Q8TDM6 1919 aa15.95■□□□□ 0.14
RABGGTA-215ENST00000560207 ADAMTS7Q9UKP4 1686 aa15.95■□□□□ 0.14
RABGGTA-215ENST00000560207 BTAF1O14981 1849 aa15.94■□□□□ 0.14
RABGGTA-215ENST00000560207 RUNDC1Q96C34 613 aa15.94■□□□□ 0.14
RABGGTA-215ENST00000560207 MAP3K5Q99683 1374 aa15.93■□□□□ 0.14
RABGGTA-215ENST00000560207 PLSCR1O15162 318 aa15.93■□□□□ 0.14
RABGGTA-215ENST00000560207 LMOD3Q0VAK6 560 aa15.93■□□□□ 0.14
RABGGTA-215ENST00000560207 MTHFSDQ2M296 383 aaKnown RBP15.93■□□□□ 0.14
RABGGTA-215ENST00000560207 PNISRQ8TF01 805 aaKnown RBP15.93■□□□□ 0.14
RABGGTA-215ENST00000560207 PLEKHF1Q96S99 279 aa15.93■□□□□ 0.14
RABGGTA-215ENST00000560207 TRIM37O94972 964 aa15.92■□□□□ 0.14
RABGGTA-215ENST00000560207 NCBP3Q53F19 620 aaKnown RBP15.92■□□□□ 0.14
RABGGTA-215ENST00000560207 FAM182BQ5T319 152 aa15.92■□□□□ 0.14
RABGGTA-215ENST00000560207 RTF1Q92541 710 aaKnown RBP15.92■□□□□ 0.14
RABGGTA-215ENST00000560207 ADAMTS8Q9UP79 889 aa15.92■□□□□ 0.14
RABGGTA-215ENST00000560207 EP400Q96L91 3159 aa15.91■□□□□ 0.14
RABGGTA-215ENST00000560207 NGEFQ8N5V2 710 aa15.91■□□□□ 0.14
RABGGTA-215ENST00000560207 SMARCC1Q92922 1105 aaPredicted RBP15.91■□□□□ 0.14
RABGGTA-215ENST00000560207 TOGARAM1Q9Y4F4 1720 aa15.91■□□□□ 0.14
RABGGTA-215ENST00000560207 APBA3O96018 575 aa15.9■□□□□ 0.14
RABGGTA-215ENST00000560207 PRIM1P49642 420 aaKnown RBP15.9■□□□□ 0.14
RABGGTA-215ENST00000560207 NFE2L2Q16236 605 aa15.9■□□□□ 0.14
RABGGTA-215ENST00000560207 PHACTR3Q96KR7 559 aa15.9■□□□□ 0.14
RABGGTA-215ENST00000560207 TMOD3Q9NYL9 352 aa15.9■□□□□ 0.14
RABGGTA-215ENST00000560207 CABP4P57796 275 aa15.89■□□□□ 0.13
RABGGTA-215ENST00000560207 SYTL4Q96C24 671 aaPredicted RBP15.89■□□□□ 0.13
RABGGTA-215ENST00000560207 LY75O60449 1722 aa15.88■□□□□ 0.13
RABGGTA-215ENST00000560207 ACSBG1Q96GR2 724 aa15.88■□□□□ 0.13
RABGGTA-215ENST00000560207 MRC1P22897 1456 aa15.88■□□□□ 0.13
RABGGTA-215ENST00000560207 ZNF831Q5JPB2 1677 aa15.88■□□□□ 0.13
RABGGTA-215ENST00000560207 RNMTO43148 476 aaKnown RBP15.87■□□□□ 0.13
RABGGTA-215ENST00000560207 TEFQ10587 303 aa15.87■□□□□ 0.13
RABGGTA-215ENST00000560207 MPRIPQ6WCQ1 1025 aa15.87■□□□□ 0.13
RABGGTA-215ENST00000560207 SIPA1L3O60292 1781 aaPredicted RBP15.87■□□□□ 0.13
RABGGTA-215ENST00000560207 CEMIPQ8WUJ3 1361 aa15.87■□□□□ 0.13
RABGGTA-215ENST00000560207 KDM6AO15550 1401 aaPredicted RBP15.86■□□□□ 0.13
RABGGTA-215ENST00000560207 SLC27A3Q5K4L6 730 aa15.86■□□□□ 0.13
RABGGTA-215ENST00000560207 SLC52A2Q9HAB3 445 aa15.86■□□□□ 0.13
RABGGTA-215ENST00000560207 KCNQ2O43526 872 aa15.85■□□□□ 0.13
RABGGTA-215ENST00000560207 TMPOP42166 694 aaKnown RBP15.85■□□□□ 0.13
RABGGTA-215ENST00000560207 CALD1Q05682 793 aaKnown RBP15.85■□□□□ 0.13
RABGGTA-215ENST00000560207 RREB1Q92766 1687 aa15.85■□□□□ 0.13
RABGGTA-215ENST00000560207 RIPK4P57078 832 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms