RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.52□□□□□ -0.56
USP3-217ENST00000560070 PRIM1P49642 420 aaKnown RBP11.52□□□□□ -0.57
USP3-217ENST00000560070 CFAP53Q96M91 514 aa11.52□□□□□ -0.57
USP3-217ENST00000560070 NPC1L1Q9UHC9 1359 aa11.52□□□□□ -0.57
USP3-217ENST00000560070 BCL11BQ9C0K0 894 aaPredicted RBP11.51□□□□□ -0.57
USP3-217ENST00000560070 SPG7Q9UQ90 795 aa11.51□□□□□ -0.57
USP3-217ENST00000560070 CYP27B1O15528 508 aa11.5□□□□□ -0.57
USP3-217ENST00000560070 PLEKHO1Q53GL0 409 aaPredicted RBP11.5□□□□□ -0.57
USP3-217ENST00000560070 CAMKK2Q96RR4 588 aa11.49□□□□□ -0.57
USP3-217ENST00000560070 IGSF1Q8N6C5 1336 aa11.49□□□□□ -0.57
USP3-217ENST00000560070 MEGF6O75095 1541 aa11.49□□□□□ -0.57
USP3-217ENST00000560070 ABCC6O95255 1503 aa11.49□□□□□ -0.57
USP3-217ENST00000560070 U2AF1L5P0DN76 240 aaPredicted RBP11.48□□□□□ -0.57
USP3-217ENST00000560070 U2AF1Q01081 240 aaKnown RBP eCLIP11.48□□□□□ -0.578e-9■□□□□ 10.7
USP3-217ENST00000560070 ZNF530Q6P9A1 599 aaPredicted RBP11.48□□□□□ -0.57
USP3-217ENST00000560070 PPP4R3CPQ6ZMV5 832 aa11.48□□□□□ -0.57
USP3-217ENST00000560070 NUDCQ9Y266 331 aa11.48□□□□□ -0.57
USP3-217ENST00000560070 OVOS2A0A0G2JMS6 1433 aa11.48□□□□□ -0.57
USP3-217ENST00000560070 USP54Q70EL1 1684 aa11.48□□□□□ -0.57
USP3-217ENST00000560070 PEAK1Q9H792 1746 aa11.48□□□□□ -0.57
USP3-217ENST00000560070 RALBP1Q15311 655 aa11.47□□□□□ -0.57
USP3-217ENST00000560070 MPRIPQ6WCQ1 1025 aa11.47□□□□□ -0.57
USP3-217ENST00000560070 THSD7AQ9UPZ6 1657 aa11.46□□□□□ -0.57
USP3-217ENST00000560070 TNS2Q63HR2 1409 aa11.46□□□□□ -0.57
USP3-217ENST00000560070 PCDH11XQ9BZA7 1347 aa11.46□□□□□ -0.57
USP3-217ENST00000560070 PCDH11YQ9BZA8 1340 aa11.46□□□□□ -0.57
USP3-217ENST00000560070 PHKG2P15735 406 aa11.46□□□□□ -0.57
USP3-217ENST00000560070 IFNL2Q8IZJ0 200 aa11.46□□□□□ -0.57
USP3-217ENST00000560070 KIF20BQ96Q89 1820 aa11.45□□□□□ -0.58
USP3-217ENST00000560070 PSDA5PKW4 1024 aaPredicted RBP11.45□□□□□ -0.58
USP3-217ENST00000560070 KCNQ4P56696 695 aa11.45□□□□□ -0.58
USP3-217ENST00000560070 AMOTQ4VCS5 1084 aa11.45□□□□□ -0.58
USP3-217ENST00000560070 C1orf141Q5JVX7 400 aa11.45□□□□□ -0.58
USP3-217ENST00000560070 PROM2Q8N271 834 aa11.45□□□□□ -0.58
USP3-217ENST00000560070 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.45□□□□□ -0.582e-7■□□□□ 10.5
USP3-217ENST00000560070 RGPD5Q99666 1765 aa11.44□□□□□ -0.58
USP3-217ENST00000560070 MTHFSDQ2M296 383 aaKnown RBP11.44□□□□□ -0.58
USP3-217ENST00000560070 CNKSR2Q8WXI2 1034 aa11.44□□□□□ -0.58
USP3-217ENST00000560070 PARD3Q8TEW0 1356 aa11.43□□□□□ -0.58
USP3-217ENST00000560070 PLSCR1O15162 318 aa11.43□□□□□ -0.58
USP3-217ENST00000560070 PRKAR2BP31323 418 aa11.43□□□□□ -0.58
USP3-217ENST00000560070 R3HDM1Q15032 1099 aaKnown RBP11.43□□□□□ -0.58
USP3-217ENST00000560070 TXNRD1Q16881 649 aa11.43□□□□□ -0.58
USP3-217ENST00000560070 PIGBQ92521 554 aa11.43□□□□□ -0.58
USP3-217ENST00000560070 PHACTR3Q96KR7 559 aa11.43□□□□□ -0.58
USP3-217ENST00000560070 PRKRIP1Q9H875 184 aaPredicted RBP11.43□□□□□ -0.58
USP3-217ENST00000560070 LTN1O94822 1766 aa11.43□□□□□ -0.58
USP3-217ENST00000560070 MYBBP1AQ9BQG0 1328 aaKnown RBP11.42□□□□□ -0.58
USP3-217ENST00000560070 CABP4P57796 275 aa11.42□□□□□ -0.58
USP3-217ENST00000560070 NKX1-1Q15270 411 aaPredicted RBP11.42□□□□□ -0.58
USP3-217ENST00000560070 NBPF14Q5TI25 921 aa11.42□□□□□ -0.58
USP3-217ENST00000560070 LGR6Q9HBX8 967 aa11.42□□□□□ -0.58
USP3-217ENST00000560070 TMOD3Q9NYL9 352 aa11.41□□□□□ -0.58
USP3-217ENST00000560070 BRWD3Q6RI45 1802 aa11.41□□□□□ -0.58
USP3-217ENST00000560070 ANP32CO43423 234 aa11.4□□□□□ -0.58
USP3-217ENST00000560070 HSP90AB1P08238 724 aaKnown RBP11.4□□□□□ -0.58
USP3-217ENST00000560070 AKAP4Q5JQC9 854 aa11.4□□□□□ -0.58
USP3-217ENST00000560070 NFATC2IPQ8NCF5 419 aa11.4□□□□□ -0.58
USP3-217ENST00000560070 DCAF5Q96JK2 942 aa11.4□□□□□ -0.58
USP3-217ENST00000560070 RSPH6AQ9H0K4 717 aa11.4□□□□□ -0.58
USP3-217ENST00000560070 LRRC4BQ9NT99 713 aa11.4□□□□□ -0.58
USP3-217ENST00000560070 ASAP1Q9ULH1 1129 aa11.4□□□□□ -0.58
USP3-217ENST00000560070 BCL9O00512 1426 aa11.4□□□□□ -0.58
USP3-217ENST00000560070 NCAPD2Q15021 1401 aa11.4□□□□□ -0.58
USP3-217ENST00000560070 LRRC37A3O60309 1634 aa11.39□□□□□ -0.59
USP3-217ENST00000560070 RNMTO43148 476 aaKnown RBP11.39□□□□□ -0.59
USP3-217ENST00000560070 FCHSD2O94868 740 aa11.39□□□□□ -0.59
USP3-217ENST00000560070 ERVV-2B6SEH9 535 aa11.38□□□□□ -0.59
USP3-217ENST00000560070 WDR43Q15061 677 aaKnown RBP eCLIP11.38□□□□□ -0.59
USP3-217ENST00000560070 CCDC184Q52MB2 194 aa11.38□□□□□ -0.59
USP3-217ENST00000560070 RBM42Q9BTD8 480 aaKnown RBP11.38□□□□□ -0.59
USP3-217ENST00000560070 CCNL1Q9UK58 526 aaPredicted RBP11.38□□□□□ -0.59
USP3-217ENST00000560070 KDRP35968 1356 aa11.38□□□□□ -0.59
USP3-217ENST00000560070 FAM208AQ9UK61 1670 aaKnown RBP11.37□□□□□ -0.59
USP3-217ENST00000560070 PTCD1O75127 700 aaKnown RBP11.37□□□□□ -0.59
USP3-217ENST00000560070 NEFMP07197 916 aa11.37□□□□□ -0.59
USP3-217ENST00000560070 CCDC146Q8IYE0 955 aa11.37□□□□□ -0.59
USP3-217ENST00000560070 GAS2L2Q8NHY3 880 aa11.37□□□□□ -0.59
USP3-217ENST00000560070 ANO8Q9HCE9 1232 aaPredicted RBP11.37□□□□□ -0.59
USP3-217ENST00000560070 ATG3Q9NT62 314 aa11.37□□□□□ -0.59
USP3-217ENST00000560070 STK32BQ9NY57 414 aa11.37□□□□□ -0.59
USP3-217ENST00000560070 PARP4Q9UKK3 1724 aaKnown RBP11.37□□□□□ -0.59
USP3-217ENST00000560070 COL3A1P02461 1466 aaPredicted RBP11.37□□□□□ -0.59
USP3-217ENST00000560070 SENP3-EIF4A1A0A087X0R7 540 aa11.36□□□□□ -0.59
USP3-217ENST00000560070 GNAT3A8MTJ3 354 aa11.36□□□□□ -0.59
USP3-217ENST00000560070 DCTN1Q14203 1278 aa11.36□□□□□ -0.59
USP3-217ENST00000560070 IL17REQ8NFR9 667 aa11.36□□□□□ -0.59
USP3-217ENST00000560070 SMARCC1Q92922 1105 aaPredicted RBP11.36□□□□□ -0.59
USP3-217ENST00000560070 MAP2P11137 1827 aaKnown RBP11.35□□□□□ -0.59
USP3-217ENST00000560070 SLC39A6Q13433 755 aa11.35□□□□□ -0.59
USP3-217ENST00000560070 NEUROD2Q15784 382 aa11.35□□□□□ -0.59
USP3-217ENST00000560070 SLC27A3Q5K4L6 730 aa11.35□□□□□ -0.59
USP3-217ENST00000560070 SMIM5Q71RC9 77 aa11.35□□□□□ -0.59
USP3-217ENST00000560070 MCM10Q7L590 875 aa11.35□□□□□ -0.59
USP3-217ENST00000560070 RTF1Q92541 710 aaKnown RBP11.35□□□□□ -0.59
USP3-217ENST00000560070 ADAMTS8Q9UP79 889 aa11.35□□□□□ -0.59
USP3-217ENST00000560070 ANKRD26Q9UPS8 1709 aa11.35□□□□□ -0.59
USP3-217ENST00000560070 RGPD2P0DJD1 1756 aa11.34□□□□□ -0.59
USP3-217ENST00000560070 PALLDQ8WX93 1383 aa11.34□□□□□ -0.59
USP3-217ENST00000560070 ATP6V1AP38606 617 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms