RNA–Protein interactions for RNA: ENST00000557916.5

SMAD6-202, Transcript of SMAD family member 6, humanhuman

TSL 1 (best)

Gene SMAD6, Length 1,401 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6-202ENST00000557916 NUDCQ9Y266 331 aa34.27■■■■□ 3.08
SMAD6-202ENST00000557916 ANP32CO43423 234 aa34.26■■■■□ 3.07
SMAD6-202ENST00000557916 SOCS7O14512 581 aa34.25■■■■□ 3.07
SMAD6-202ENST00000557916 HMOX1P09601 288 aa34.24■■■■□ 3.07
SMAD6-202ENST00000557916 FAM196AQ6ZSG2 479 aa34.24■■■■□ 3.07
SMAD6-202ENST00000557916 KDRP35968 1356 aa34.24■■■■□ 3.07
SMAD6-202ENST00000557916 DDX54Q8TDD1 881 aaKnown RBP34.23■■■■□ 3.07
SMAD6-202ENST00000557916 EP400Q96L91 3159 aa34.21■■■■□ 3.07
SMAD6-202ENST00000557916 SPG7Q9UQ90 795 aa34.2■■■■□ 3.06
SMAD6-202ENST00000557916 UPF1Q92900 1129 aaKnown RBP eCLIP34.19■■■■□ 3.06
SMAD6-202ENST00000557916 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP34.19■■■■□ 3.06
SMAD6-202ENST00000557916 PLEKHG2Q9H7P9 1386 aa34.18■■■■□ 3.06
SMAD6-202ENST00000557916 PCDH11XQ9BZA7 1347 aa34.17■■■■□ 3.06
SMAD6-202ENST00000557916 PCDH11YQ9BZA8 1340 aa34.17■■■■□ 3.06
SMAD6-202ENST00000557916 U2AF1L5P0DN76 240 aaPredicted RBP34.17■■■■□ 3.06
SMAD6-202ENST00000557916 U2AF1Q01081 240 aaKnown RBP eCLIP34.17■■■■□ 3.06
SMAD6-202ENST00000557916 PLEKHO1Q53GL0 409 aaPredicted RBP34.14■■■■□ 3.06
SMAD6-202ENST00000557916 PKD1L3Q7Z443 1732 aa34.14■■■■□ 3.06
SMAD6-202ENST00000557916 SHANK3Q9BYB0 1731 aa34.14■■■■□ 3.06
SMAD6-202ENST00000557916 AMOTQ4VCS5 1084 aa34.13■■■■□ 3.05
SMAD6-202ENST00000557916 BCL9O00512 1426 aa34.13■■■■□ 3.05
SMAD6-202ENST00000557916 CYP27B1O15528 508 aa34.13■■■■□ 3.05
SMAD6-202ENST00000557916 TRIM37O94972 964 aa34.1■■■■□ 3.05
SMAD6-202ENST00000557916 CCDC125Q86Z20 511 aa34.1■■■■□ 3.05
SMAD6-202ENST00000557916 RSPH6AQ9H0K4 717 aa34.09■■■■□ 3.05
SMAD6-202ENST00000557916 FCHSD2O94868 740 aa34.08■■■■□ 3.05
SMAD6-202ENST00000557916 IFNL2Q8IZJ0 200 aa34.07■■■■□ 3.04
SMAD6-202ENST00000557916 PRKAR2BP31323 418 aa34.06■■■■□ 3.04
SMAD6-202ENST00000557916 ZNF530Q6P9A1 599 aaPredicted RBP34.06■■■■□ 3.04
SMAD6-202ENST00000557916 PHKG2P15735 406 aa34.05■■■■□ 3.04
SMAD6-202ENST00000557916 SF3B2Q13435 895 aaKnown RBP34.05■■■■□ 3.04
SMAD6-202ENST00000557916 ACSBG1Q96GR2 724 aa34.05■■■■□ 3.04
SMAD6-202ENST00000557916 NKX1-1Q15270 411 aaPredicted RBP34.02■■■■□ 3.04
SMAD6-202ENST00000557916 BCL11BQ9C0K0 894 aaPredicted RBP34.02■■■■□ 3.04
SMAD6-202ENST00000557916 SBF2Q86WG5 1849 aa34.01■■■■□ 3.04
SMAD6-202ENST00000557916 KCNQ2O43526 872 aa34.01■■■■□ 3.03
SMAD6-202ENST00000557916 MTHFSDQ2M296 383 aaKnown RBP34.01■■■■□ 3.03
SMAD6-202ENST00000557916 CCDC184Q52MB2 194 aa34.01■■■■□ 3.03
SMAD6-202ENST00000557916 WDR43Q15061 677 aaKnown RBP eCLIP34■■■■□ 3.03
SMAD6-202ENST00000557916 C1orf141Q5JVX7 400 aa34■■■■□ 3.03
SMAD6-202ENST00000557916 PTF1AQ7RTS3 328 aa33.99■■■■□ 3.03
SMAD6-202ENST00000557916 PHACTR3Q96KR7 559 aa33.99■■■■□ 3.03
SMAD6-202ENST00000557916 HSP90AB1P08238 724 aaKnown RBP33.97■■■■□ 3.03
SMAD6-202ENST00000557916 PRIM1P49642 420 aaKnown RBP33.97■■■■□ 3.03
SMAD6-202ENST00000557916 DIEXFQ68CQ4 756 aaKnown RBP33.97■■■■□ 3.03
SMAD6-202ENST00000557916 APBA3O96018 575 aa33.96■■■■□ 3.03
SMAD6-202ENST00000557916 SYTL4Q96C24 671 aaPredicted RBP33.96■■■■□ 3.03
SMAD6-202ENST00000557916 PNNQ9H307 717 aaKnown RBP33.96■■■■□ 3.03
SMAD6-202ENST00000557916 AKAP4Q5JQC9 854 aa33.96■■■■□ 3.03
SMAD6-202ENST00000557916 MRS2Q9HD23 443 aa33.96■■■■□ 3.03
SMAD6-202ENST00000557916 NEFMP07197 916 aa33.95■■■■□ 3.02
SMAD6-202ENST00000557916 GAS2L2Q8NHY3 880 aa33.95■■■■□ 3.02
SMAD6-202ENST00000557916 NHSQ6T4R5 1651 aa33.94■■■■□ 3.02
SMAD6-202ENST00000557916 TNS1Q9HBL0 1735 aaKnown RBP33.94■■■■□ 3.02
SMAD6-202ENST00000557916 KAT6BQ8WYB5 2073 aa33.94■■■■□ 3.02
SMAD6-202ENST00000557916 BAG6P46379 1132 aa33.94■■■■□ 3.02
SMAD6-202ENST00000557916 DCAF5Q96JK2 942 aa33.94■■■■□ 3.02
SMAD6-202ENST00000557916 DOT1LQ8TEK3 1739 aa33.93■■■■□ 3.02
SMAD6-202ENST00000557916 PLEKHF1Q96S99 279 aa33.93■■■■□ 3.02
SMAD6-202ENST00000557916 ADAMTS8Q9UP79 889 aa33.93■■■■□ 3.02
SMAD6-202ENST00000557916 DEFB132Q7Z7B7 95 aa33.92■■■■□ 3.02
SMAD6-202ENST00000557916 MPRIPQ6WCQ1 1025 aa33.91■■■■□ 3.02
SMAD6-202ENST00000557916 KDM6AO15550 1401 aaPredicted RBP33.88■■■■□ 3.01
SMAD6-202ENST00000557916 MAPK8IP3Q9UPT6 1336 aa33.88■■■■□ 3.01
SMAD6-202ENST00000557916 EN1Q05925 392 aaPredicted RBP33.87■■■■□ 3.01
SMAD6-202ENST00000557916 TOGARAM1Q9Y4F4 1720 aa33.87■■■■□ 3.01
SMAD6-202ENST00000557916 GNAT3A8MTJ3 354 aa33.86■■■■□ 3.01
SMAD6-202ENST00000557916 ERVV-2B6SEH9 535 aa33.86■■■■□ 3.01
SMAD6-202ENST00000557916 MAP3K5Q99683 1374 aa33.85■■■■□ 3.01
SMAD6-202ENST00000557916 PNISRQ8TF01 805 aaKnown RBP33.85■■■■□ 3.01
SMAD6-202ENST00000557916 PLSCR1O15162 318 aa33.84■■■■□ 3.01
SMAD6-202ENST00000557916 CCDC146Q8IYE0 955 aa33.84■■■■□ 3.01
SMAD6-202ENST00000557916 LGR6Q9HBX8 967 aa33.84■■■■□ 3.01
SMAD6-202ENST00000557916 TMOD3Q9NYL9 352 aa33.84■■■■□ 3.01
SMAD6-202ENST00000557916 CAMKK2Q96RR4 588 aa33.83■■■■□ 3.01
SMAD6-202ENST00000557916 BTAF1O14981 1849 aa33.82■■■■□ 3.01
SMAD6-202ENST00000557916 RNMTO43148 476 aaKnown RBP33.82■■■■□ 3
SMAD6-202ENST00000557916 PIGBQ92521 554 aa33.82■■■■□ 3
SMAD6-202ENST00000557916 CABP4P57796 275 aa33.81■■■■□ 3
SMAD6-202ENST00000557916 EZH2Q15910 746 aaKnown RBP33.81■■■■□ 3
SMAD6-202ENST00000557916 RUNDC1Q96C34 613 aa33.81■■■■□ 3
SMAD6-202ENST00000557916 ITGB4P16144 1822 aa33.8■■■■□ 3
SMAD6-202ENST00000557916 NFE2L2Q16236 605 aa33.79■■■■□ 3
SMAD6-202ENST00000557916 SCN11AQ9UI33 1791 aa33.77■■■■□ 3
SMAD6-202ENST00000557916 NFATC2IPQ8NCF5 419 aa33.77■■■■□ 3
SMAD6-202ENST00000557916 IL17REQ8NFR9 667 aa33.77■■■■□ 3
SMAD6-202ENST00000557916 RTF1Q92541 710 aaKnown RBP33.77■■■■□ 3
SMAD6-202ENST00000557916 HTATSF1O43719 755 aaKnown RBP33.74■■■□□ 2.99
SMAD6-202ENST00000557916 SLC52A2Q9HAB3 445 aa33.74■■■□□ 2.99
SMAD6-202ENST00000557916 ADAMTS7Q9UKP4 1686 aa33.73■■■□□ 2.99
SMAD6-202ENST00000557916 CCER2I3L3R5 266 aa33.73■■■□□ 2.99
SMAD6-202ENST00000557916 TMPOP42166 694 aaKnown RBP33.72■■■□□ 2.99
SMAD6-202ENST00000557916 MIER1Q8N108 512 aa33.72■■■□□ 2.99
SMAD6-202ENST00000557916 RGPD3A6NKT7 1758 aaPredicted RBP33.72■■■□□ 2.99
SMAD6-202ENST00000557916 RGPD4Q7Z3J3 1758 aa33.72■■■□□ 2.99
SMAD6-202ENST00000557916 TXNRD1Q16881 649 aa33.71■■■□□ 2.99
SMAD6-202ENST00000557916 MCM10Q7L590 875 aa33.71■■■□□ 2.99
SMAD6-202ENST00000557916 PROM2Q8N271 834 aa33.71■■■□□ 2.99
SMAD6-202ENST00000557916 SMARCC1Q92922 1105 aaPredicted RBP33.71■■■□□ 2.99
SMAD6-202ENST00000557916 RIPK4P57078 832 aa33.7■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms