RNA–Protein interactions for RNA: ENST00000557644.5

NEDD1-213, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 1 (best) BASIC

Gene NEDD1, Length 2,367 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-213ENST00000557644 CDCA7Q9BWT1 371 aaPredicted RBP20.36■□□□□ 0.85
NEDD1-213ENST00000557644 OVOS2A0A0G2JMS6 1433 aa20.36■□□□□ 0.85
NEDD1-213ENST00000557644 RGS12O14924 1447 aa20.36■□□□□ 0.85
NEDD1-213ENST00000557644 WNK3Q9BYP7 1800 aa20.35■□□□□ 0.85
NEDD1-213ENST00000557644 FCHSD2O94868 740 aa20.35■□□□□ 0.85
NEDD1-213ENST00000557644 DDB1Q16531 1140 aa20.34■□□□□ 0.85
NEDD1-213ENST00000557644 FAM9BQ8IZU0 186 aa20.34■□□□□ 0.85
NEDD1-213ENST00000557644 PHACTR3Q96KR7 559 aa20.34■□□□□ 0.85
NEDD1-213ENST00000557644 EP400Q96L91 3159 aa20.34■□□□□ 0.85
NEDD1-213ENST00000557644 CCDC146Q8IYE0 955 aa20.34■□□□□ 0.85
NEDD1-213ENST00000557644 EXOC5O00471 708 aa20.33■□□□□ 0.85
NEDD1-213ENST00000557644 ZCRB1Q8TBF4 217 aaKnown RBP20.32■□□□□ 0.84
NEDD1-213ENST00000557644 PLEKHF1Q96S99 279 aa20.32■□□□□ 0.84
NEDD1-213ENST00000557644 LRRC37A3O60309 1634 aa20.32■□□□□ 0.84
NEDD1-213ENST00000557644 PARP4Q9UKK3 1724 aaKnown RBP20.31■□□□□ 0.84
NEDD1-213ENST00000557644 FAM182BQ5T319 152 aa20.31■□□□□ 0.84
NEDD1-213ENST00000557644 DDX54Q8TDD1 881 aaKnown RBP20.31■□□□□ 0.84
NEDD1-213ENST00000557644 TNS2Q63HR2 1409 aa20.31■□□□□ 0.84
NEDD1-213ENST00000557644 MTHFSDQ2M296 383 aaKnown RBP20.29■□□□□ 0.84
NEDD1-213ENST00000557644 PLEKHO1Q53GL0 409 aaPredicted RBP20.29■□□□□ 0.84
NEDD1-213ENST00000557644 CYP27B1O15528 508 aa20.29■□□□□ 0.84
NEDD1-213ENST00000557644 PDE3BQ13370 1112 aa20.29■□□□□ 0.84
NEDD1-213ENST00000557644 MARCH10Q8NA82 808 aaPredicted RBP20.29■□□□□ 0.84
NEDD1-213ENST00000557644 SPG7Q9UQ90 795 aa20.29■□□□□ 0.84
NEDD1-213ENST00000557644 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.28■□□□□ 0.841e-9■■■■□ 20.2
NEDD1-213ENST00000557644 AMOTQ4VCS5 1084 aa20.28■□□□□ 0.84
NEDD1-213ENST00000557644 BRWD3Q6RI45 1802 aa20.28■□□□□ 0.84
NEDD1-213ENST00000557644 SENP3-EIF4A1A0A087X0R7 540 aa20.27■□□□□ 0.84
NEDD1-213ENST00000557644 ZNF530Q6P9A1 599 aaPredicted RBP20.27■□□□□ 0.84
NEDD1-213ENST00000557644 KRT27Q7Z3Y8 459 aa20.27■□□□□ 0.84
NEDD1-213ENST00000557644 PKD1L3Q7Z443 1732 aa20.27■□□□□ 0.84
NEDD1-213ENST00000557644 SHANK3Q9BYB0 1731 aa20.26■□□□□ 0.83
NEDD1-213ENST00000557644 PCDH11XQ9BZA7 1347 aa20.26■□□□□ 0.83
NEDD1-213ENST00000557644 PCDH11YQ9BZA8 1340 aa20.26■□□□□ 0.83
NEDD1-213ENST00000557644 PNNQ9H307 717 aaKnown RBP20.26■□□□□ 0.83
NEDD1-213ENST00000557644 MAPK8IP3Q9UPT6 1336 aa20.26■□□□□ 0.83
NEDD1-213ENST00000557644 RUNDC1Q96C34 613 aa20.26■□□□□ 0.83
NEDD1-213ENST00000557644 PLEKHG2Q9H7P9 1386 aa20.25■□□□□ 0.83
NEDD1-213ENST00000557644 PHKG2P15735 406 aa20.24■□□□□ 0.83
NEDD1-213ENST00000557644 NEFMP07197 916 aa20.24■□□□□ 0.83
NEDD1-213ENST00000557644 IFNL2Q8IZJ0 200 aa20.23■□□□□ 0.83
NEDD1-213ENST00000557644 RRP7AQ9Y3A4 280 aaKnown RBP20.23■□□□□ 0.83
NEDD1-213ENST00000557644 ILDR2Q71H61 639 aa20.22■□□□□ 0.83
NEDD1-213ENST00000557644 GAS2L2Q8NHY3 880 aa20.22■□□□□ 0.83
NEDD1-213ENST00000557644 C1orf141Q5JVX7 400 aa20.22■□□□□ 0.83
NEDD1-213ENST00000557644 APAF1O14727 1248 aa20.21■□□□□ 0.83
NEDD1-213ENST00000557644 NEUROD2Q15784 382 aa20.21■□□□□ 0.83
NEDD1-213ENST00000557644 NFE2L2Q16236 605 aa20.2■□□□□ 0.82
NEDD1-213ENST00000557644 AKAP4Q5JQC9 854 aa20.2■□□□□ 0.82
NEDD1-213ENST00000557644 TMPOP42166 694 aaKnown RBP20.2■□□□□ 0.82
NEDD1-213ENST00000557644 MPRIPQ6WCQ1 1025 aa20.2■□□□□ 0.82
NEDD1-213ENST00000557644 NKX1-1Q15270 411 aaPredicted RBP20.18■□□□□ 0.82
NEDD1-213ENST00000557644 MAP3K5Q99683 1374 aa20.18■□□□□ 0.82
NEDD1-213ENST00000557644 GNAT3A8MTJ3 354 aa20.17■□□□□ 0.82
NEDD1-213ENST00000557644 RIPK4P57078 832 aa20.17■□□□□ 0.82
NEDD1-213ENST00000557644 ACSBG1Q96GR2 724 aa20.17■□□□□ 0.82
NEDD1-213ENST00000557644 LGR6Q9HBX8 967 aa20.17■□□□□ 0.82
NEDD1-213ENST00000557644 KDM6AO15550 1401 aaPredicted RBP20.17■□□□□ 0.82
NEDD1-213ENST00000557644 DCTN1Q14203 1278 aa20.17■□□□□ 0.82
NEDD1-213ENST00000557644 FAM196AQ6ZSG2 479 aa20.16■□□□□ 0.82
NEDD1-213ENST00000557644 MCM10Q7L590 875 aa20.15■□□□□ 0.82
NEDD1-213ENST00000557644 PTF1AQ7RTS3 328 aa20.15■□□□□ 0.82
NEDD1-213ENST00000557644 DCAF5Q96JK2 942 aa20.15■□□□□ 0.82
NEDD1-213ENST00000557644 KCNQ2O43526 872 aa20.15■□□□□ 0.82
NEDD1-213ENST00000557644 IL17REQ8NFR9 667 aa20.15■□□□□ 0.82
NEDD1-213ENST00000557644 SALL2Q9Y467 1007 aaPredicted RBP20.15■□□□□ 0.82
NEDD1-213ENST00000557644 HSP90AB1P08238 724 aaKnown RBP20.14■□□□□ 0.82
NEDD1-213ENST00000557644 THUMPD2Q9BTF0 503 aaKnown RBP20.14■□□□□ 0.81
NEDD1-213ENST00000557644 RNMTO43148 476 aaKnown RBP20.13■□□□□ 0.81
NEDD1-213ENST00000557644 PRIM1P49642 420 aaKnown RBP20.13■□□□□ 0.81
NEDD1-213ENST00000557644 SYTL4Q96C24 671 aaPredicted RBP20.13■□□□□ 0.81
NEDD1-213ENST00000557644 BCL9O00512 1426 aa20.13■□□□□ 0.81
NEDD1-213ENST00000557644 RTF1Q92541 710 aaKnown RBP20.13■□□□□ 0.81
NEDD1-213ENST00000557644 TRIM35Q9UPQ4 493 aa20.13■□□□□ 0.81
NEDD1-213ENST00000557644 DLG5Q8TDM6 1919 aa20.13■□□□□ 0.81
NEDD1-213ENST00000557644 TOGARAM1Q9Y4F4 1720 aa20.12■□□□□ 0.81
NEDD1-213ENST00000557644 TRIM37O94972 964 aa20.12■□□□□ 0.81
NEDD1-213ENST00000557644 KAT6BQ8WYB5 2073 aa20.12■□□□□ 0.81
NEDD1-213ENST00000557644 DOT1LQ8TEK3 1739 aa20.11■□□□□ 0.81
NEDD1-213ENST00000557644 CEMIPQ8WUJ3 1361 aa20.1■□□□□ 0.81
NEDD1-213ENST00000557644 HTATSF1O43719 755 aaKnown RBP20.09■□□□□ 0.81
NEDD1-213ENST00000557644 NFATC2IPQ8NCF5 419 aa20.09■□□□□ 0.81
NEDD1-213ENST00000557644 ERVV-2B6SEH9 535 aa20.08■□□□□ 0.81
NEDD1-213ENST00000557644 CABP4P57796 275 aa20.08■□□□□ 0.8
NEDD1-213ENST00000557644 PIGBQ92521 554 aa20.08■□□□□ 0.8
NEDD1-213ENST00000557644 ADAMTS7Q9UKP4 1686 aa20.08■□□□□ 0.8
NEDD1-213ENST00000557644 SCN11AQ9UI33 1791 aa20.08■□□□□ 0.8
NEDD1-213ENST00000557644 SBF2Q86WG5 1849 aa20.07■□□□□ 0.8
NEDD1-213ENST00000557644 SLC52A2Q9HAB3 445 aa20.07■□□□□ 0.8
NEDD1-213ENST00000557644 LMOD3Q0VAK6 560 aa20.07■□□□□ 0.8
NEDD1-213ENST00000557644 TMOD3Q9NYL9 352 aa20.07■□□□□ 0.8
NEDD1-213ENST00000557644 BCL11BQ9C0K0 894 aaPredicted RBP20.06■□□□□ 0.8
NEDD1-213ENST00000557644 TEFQ10587 303 aa20.06■□□□□ 0.8
NEDD1-213ENST00000557644 WWC1Q8IX03 1113 aa20.06■□□□□ 0.8
NEDD1-213ENST00000557644 VIRMAQ69YN4 1812 aaKnown RBP20.05■□□□□ 0.8
NEDD1-213ENST00000557644 NHSQ6T4R5 1651 aa20.04■□□□□ 0.8
NEDD1-213ENST00000557644 ITGB4P16144 1822 aa20.04■□□□□ 0.8
NEDD1-213ENST00000557644 MRC1P22897 1456 aa20.04■□□□□ 0.8
NEDD1-213ENST00000557644 HNRNPUQ00839 825 aaKnown RBP eCLIP20.04■□□□□ 0.8
NEDD1-213ENST00000557644 CCDC27Q2M243 656 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms