RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 BABAM1Q9NWV8 329 aa16.13■□□□□ 0.17
SHMT2-229ENST00000557348 ZNF335Q9H4Z2 1342 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-229ENST00000557348 PLEKHG2Q9H7P9 1386 aa16.13■□□□□ 0.17
SHMT2-229ENST00000557348 ALS2Q96Q42 1657 aa16.13■□□□□ 0.17
SHMT2-229ENST00000557348 CHL1O00533 1208 aa16.12■□□□□ 0.17
SHMT2-229ENST00000557348 KDM2BQ8NHM5 1336 aa16.12■□□□□ 0.17
SHMT2-229ENST00000557348 DDX19BQ9UMR2 479 aa16.11■□□□□ 0.17
SHMT2-229ENST00000557348 SOS1Q07889 1333 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-229ENST00000557348 TNS3Q68CZ2 1445 aa16.11■□□□□ 0.17
SHMT2-229ENST00000557348 MVPQ14764 893 aaKnown RBP16.11■□□□□ 0.17
SHMT2-229ENST00000557348 PANK1Q8TE04 598 aa16.11■□□□□ 0.17
SHMT2-229ENST00000557348 COG6Q9Y2V7 657 aa16.11■□□□□ 0.17
SHMT2-229ENST00000557348 NCAPD2Q15021 1401 aa16.1■□□□□ 0.17
SHMT2-229ENST00000557348 VAMP4O75379 141 aa16.1■□□□□ 0.17
SHMT2-229ENST00000557348 MTHFSDQ2M296 383 aaKnown RBP16.1■□□□□ 0.17
SHMT2-229ENST00000557348 TWISTNBQ3B726 338 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-229ENST00000557348 THUMPD2Q9BTF0 503 aaKnown RBP16.1■□□□□ 0.17
SHMT2-229ENST00000557348 BCL2L13Q9BXK5 485 aa16.1■□□□□ 0.17
SHMT2-229ENST00000557348 CRB1P82279 1406 aa16.09■□□□□ 0.17
SHMT2-229ENST00000557348 MAP3K5Q99683 1374 aa16.09■□□□□ 0.17
SHMT2-229ENST00000557348 GNAT3A8MTJ3 354 aa16.09■□□□□ 0.17
SHMT2-229ENST00000557348 LMOD2Q6P5Q4 547 aa16.09■□□□□ 0.17
SHMT2-229ENST00000557348 MED1Q15648 1581 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-229ENST00000557348 AMOTQ4VCS5 1084 aa16.08■□□□□ 0.17
SHMT2-229ENST00000557348 LRRC37A3O60309 1634 aa16.08■□□□□ 0.16
SHMT2-229ENST00000557348 FAM83GA6ND36 823 aa16.08■□□□□ 0.16
SHMT2-229ENST00000557348 TRIM27P14373 513 aa16.08■□□□□ 0.16
SHMT2-229ENST00000557348 CHMP4AQ9BY43 222 aa16.08■□□□□ 0.16
SHMT2-229ENST00000557348 PXDNQ92626 1479 aa16.07■□□□□ 0.16
SHMT2-229ENST00000557348 XPCQ01831 940 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-229ENST00000557348 NOB1Q9ULX3 412 aaKnown RBP16.07■□□□□ 0.16
SHMT2-229ENST00000557348 CAMTA1Q9Y6Y1 1673 aa16.06■□□□□ 0.16
SHMT2-229ENST00000557348 PRKCSHP14314 528 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-229ENST00000557348 LTV1Q96GA3 475 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-229ENST00000557348 API5Q9BZZ5 524 aaKnown RBP16.06■□□□□ 0.16
SHMT2-229ENST00000557348 DCTN1Q14203 1278 aa16.05■□□□□ 0.16
SHMT2-229ENST00000557348 MCM10Q7L590 875 aa16.05■□□□□ 0.16
SHMT2-229ENST00000557348 MRPL50Q8N5N7 158 aaKnown RBP16.05■□□□□ 0.16
SHMT2-229ENST00000557348 OVOS2A0A0G2JMS6 1433 aa16.05■□□□□ 0.16
SHMT2-229ENST00000557348 SPATA31A3Q5VYP0 1347 aa16.05■□□□□ 0.16
SHMT2-229ENST00000557348 RLBP1P12271 317 aa16.05■□□□□ 0.16
SHMT2-229ENST00000557348 PLEKHO1Q53GL0 409 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-229ENST00000557348 RWDD1Q9H446 243 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-229ENST00000557348 XIRP1Q702N8 1843 aaKnown RBP16.04■□□□□ 0.16
SHMT2-229ENST00000557348 ANKRD24Q8TF21 1146 aa16.04■□□□□ 0.16
SHMT2-229ENST00000557348 TSPYL4Q9UJ04 414 aa16.04■□□□□ 0.16
SHMT2-229ENST00000557348 CPDO75976 1380 aa16.04■□□□□ 0.16
SHMT2-229ENST00000557348 NBPF6Q5VWK0 638 aa16.03■□□□□ 0.16
SHMT2-229ENST00000557348 NBPF4Q96M43 638 aa16.03■□□□□ 0.16
SHMT2-229ENST00000557348 ZBTB7CA1YPR0 619 aa16.02■□□□□ 0.16
SHMT2-229ENST00000557348 BRINP3Q76B58 766 aa16.02■□□□□ 0.16
SHMT2-229ENST00000557348 ITPRIPQ8IWB1 547 aa16.02■□□□□ 0.16
SHMT2-229ENST00000557348 C8orf58Q8NAV2 365 aa16.02■□□□□ 0.16
SHMT2-229ENST00000557348 FAM208AQ9UK61 1670 aaKnown RBP16.02■□□□□ 0.16
SHMT2-229ENST00000557348 PTPRCP08575 1304 aa16.02■□□□□ 0.15
SHMT2-229ENST00000557348 ERBB3P21860 1342 aa16.02■□□□□ 0.15
SHMT2-229ENST00000557348 TSPYL6Q8N831 410 aa16.02■□□□□ 0.15
SHMT2-229ENST00000557348 SLAIN2Q9P270 581 aa16.02■□□□□ 0.15
SHMT2-229ENST00000557348 CEMIPQ8WUJ3 1361 aa16.01■□□□□ 0.15
SHMT2-229ENST00000557348 AKAP4Q5JQC9 854 aa16.01■□□□□ 0.15
SHMT2-229ENST00000557348 DDRGK1Q96HY6 314 aa16.01■□□□□ 0.15
SHMT2-229ENST00000557348 TAF7Q15545 349 aaPredicted RBP16■□□□□ 0.15
SHMT2-229ENST00000557348 ABCC4O15439 1325 aa16■□□□□ 0.15
SHMT2-229ENST00000557348 SOS2Q07890 1332 aaPredicted RBP16■□□□□ 0.15
SHMT2-229ENST00000557348 C1orf141Q5JVX7 400 aa15.99■□□□□ 0.15
SHMT2-229ENST00000557348 LMO7Q8WWI1 1683 aa15.99■□□□□ 0.15
SHMT2-229ENST00000557348 TMEM57Q8N5G2 664 aa15.99■□□□□ 0.15
SHMT2-229ENST00000557348 UBAP1LF5GYI3 381 aa15.98■□□□□ 0.15
SHMT2-229ENST00000557348 HOXB7P09629 217 aa15.98■□□□□ 0.15
SHMT2-229ENST00000557348 HDAC1Q13547 482 aaPredicted RBP15.98■□□□□ 0.15
SHMT2-229ENST00000557348 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.98■□□□□ 0.15
SHMT2-229ENST00000557348 CRYBG1Q9Y4K1 1723 aa15.97■□□□□ 0.15
SHMT2-229ENST00000557348 ELL2O00472 640 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-229ENST00000557348 ZNF530Q6P9A1 599 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-229ENST00000557348 USHBP1Q8N6Y0 703 aa15.97■□□□□ 0.15
SHMT2-229ENST00000557348 ZBTB40Q9NUA8 1239 aa15.97■□□□□ 0.15
SHMT2-229ENST00000557348 TNNQ9UQP3 1299 aa15.97■□□□□ 0.15
SHMT2-229ENST00000557348 ZC3H6P61129 1189 aaKnown RBP15.96■□□□□ 0.15
SHMT2-229ENST00000557348 IL17REQ8NFR9 667 aa15.96■□□□□ 0.15
SHMT2-229ENST00000557348 RAPGEF4Q8WZA2 1011 aa15.96■□□□□ 0.15
SHMT2-229ENST00000557348 LRRC59Q96AG4 307 aaKnown RBP15.96■□□□□ 0.15
SHMT2-229ENST00000557348 STK31Q9BXU1 1019 aa15.96■□□□□ 0.15
SHMT2-229ENST00000557348 CCDC30Q5VVM6 783 aa15.95■□□□□ 0.14
SHMT2-229ENST00000557348 IGHDP01880 384 aa15.95■□□□□ 0.14
SHMT2-229ENST00000557348 TEFQ10587 303 aa15.95■□□□□ 0.14
SHMT2-229ENST00000557348 PCDHB15Q9Y5E8 787 aa15.95■□□□□ 0.14
SHMT2-229ENST00000557348 NBR1Q14596 966 aa15.94■□□□□ 0.14
SHMT2-229ENST00000557348 SPG7Q9UQ90 795 aa15.94■□□□□ 0.14
SHMT2-229ENST00000557348 AXIN2Q9Y2T1 843 aa15.94■□□□□ 0.14
SHMT2-229ENST00000557348 COL18A1P39060 1754 aa15.93■□□□□ 0.14
SHMT2-229ENST00000557348 TATP17735 454 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-229ENST00000557348 INTS3Q68E01 1043 aaKnown RBP15.93■□□□□ 0.14
SHMT2-229ENST00000557348 NHSL1Q5SYE7 1610 aa15.93■□□□□ 0.14
SHMT2-229ENST00000557348 DDX17Q92841 729 aaKnown RBP15.92■□□□□ 0.14
SHMT2-229ENST00000557348 NLRP2Q9NX02 1062 aa15.92■□□□□ 0.14
SHMT2-229ENST00000557348 CSB-PGBD3P0DP91 1061 aa15.92■□□□□ 0.14
SHMT2-229ENST00000557348 PDE4AP27815 886 aa15.92■□□□□ 0.14
SHMT2-229ENST00000557348 BACH2Q9BYV9 841 aa15.92■□□□□ 0.14
SHMT2-229ENST00000557348 ZBTB7BO15156 539 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-229ENST00000557348 RNMTO43148 476 aaKnown RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms