RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 SLC24A1O60721 1099 aa17.85■□□□□ 0.45
SHMT2-223ENST00000556689 FBLN1P23142 703 aa17.85■□□□□ 0.45
SHMT2-223ENST00000556689 CCNL1Q9UK58 526 aaPredicted RBP17.85■□□□□ 0.45
SHMT2-223ENST00000556689 MSH5O43196 834 aa17.84■□□□□ 0.45
SHMT2-223ENST00000556689 NLGN2Q8NFZ4 835 aa17.84■□□□□ 0.45
SHMT2-223ENST00000556689 CHD4Q14839 1912 aa17.84■□□□□ 0.45
SHMT2-223ENST00000556689 GOLGB1Q14789 3259 aaKnown RBP17.83■□□□□ 0.44
SHMT2-223ENST00000556689 GIGYF1O75420 1035 aaPredicted RBP17.83■□□□□ 0.44
SHMT2-223ENST00000556689 GRIN3BO60391 1043 aa17.82■□□□□ 0.44
SHMT2-223ENST00000556689 TESK2Q96S53 571 aa17.82■□□□□ 0.44
SHMT2-223ENST00000556689 NSD2O96028 1365 aa17.81■□□□□ 0.44
SHMT2-223ENST00000556689 ST20-MTHFSA0A0A6YYL1 179 aa17.81■□□□□ 0.44
SHMT2-223ENST00000556689 HMGB2P26583 209 aaKnown RBP17.81■□□□□ 0.44
SHMT2-223ENST00000556689 NBPF6Q5VWK0 638 aa17.81■□□□□ 0.44
SHMT2-223ENST00000556689 COL23A1Q86Y22 540 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-223ENST00000556689 NBPF4Q96M43 638 aa17.81■□□□□ 0.44
SHMT2-223ENST00000556689 TONSLQ96HA7 1378 aa17.8■□□□□ 0.44
SHMT2-223ENST00000556689 USP47Q96K76 1375 aa17.8■□□□□ 0.44
SHMT2-223ENST00000556689 CGNL1Q0VF96 1302 aa17.8■□□□□ 0.44
SHMT2-223ENST00000556689 RAPGEF4Q8WZA2 1011 aa17.8■□□□□ 0.44
SHMT2-223ENST00000556689 RRS1Q15050 365 aaKnown RBP17.79■□□□□ 0.44
SHMT2-223ENST00000556689 FYB1O15117 783 aa17.77■□□□□ 0.44
SHMT2-223ENST00000556689 YBX3P16989 372 aaKnown RBP eCLIP17.77■□□□□ 0.443e-9■□□□□ 8.7
SHMT2-223ENST00000556689 TATP17735 454 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-223ENST00000556689 USHBP1Q8N6Y0 703 aa17.77■□□□□ 0.44
SHMT2-223ENST00000556689 QSER1Q2KHR3 1735 aa17.76■□□□□ 0.43
SHMT2-223ENST00000556689 MSL1Q68DK7 614 aa17.76■□□□□ 0.43
SHMT2-223ENST00000556689 FLAD1Q8NFF5 587 aa17.76■□□□□ 0.43
SHMT2-223ENST00000556689 GGNBP2Q9H3C7 697 aa17.76■□□□□ 0.43
SHMT2-223ENST00000556689 FAM208AQ9UK61 1670 aaKnown RBP17.76■□□□□ 0.43
SHMT2-223ENST00000556689 MEGF6O75095 1541 aa17.76■□□□□ 0.43
SHMT2-223ENST00000556689 RTL1A6NKG5 1358 aa17.75■□□□□ 0.43
SHMT2-223ENST00000556689 CD2APQ9Y5K6 639 aa17.74■□□□□ 0.43
SHMT2-223ENST00000556689 COL24A1Q17RW2 1714 aa17.73■□□□□ 0.43
SHMT2-223ENST00000556689 HSP90AB2PQ58FF8 381 aa17.73■□□□□ 0.43
SHMT2-223ENST00000556689 MPRIPQ6WCQ1 1025 aa17.73■□□□□ 0.43
SHMT2-223ENST00000556689 SMG6Q86US8 1419 aaKnown RBP17.72■□□□□ 0.43
SHMT2-223ENST00000556689 TMF1P82094 1093 aa17.72■□□□□ 0.43
SHMT2-223ENST00000556689 PCDH11XQ9BZA7 1347 aa17.72■□□□□ 0.43
SHMT2-223ENST00000556689 PCDH11YQ9BZA8 1340 aa17.72■□□□□ 0.43
SHMT2-223ENST00000556689 LY75O60449 1722 aa17.71■□□□□ 0.43
SHMT2-223ENST00000556689 DOT1LQ8TEK3 1739 aa17.71■□□□□ 0.43
SHMT2-223ENST00000556689 INSRP06213 1382 aa17.7■□□□□ 0.42
SHMT2-223ENST00000556689 SMARCC1Q92922 1105 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-223ENST00000556689 PALLDQ8WX93 1383 aa17.69■□□□□ 0.42
SHMT2-223ENST00000556689 CYP27B1O15528 508 aa17.69■□□□□ 0.42
SHMT2-223ENST00000556689 TUBGCP6Q96RT7 1819 aa17.68■□□□□ 0.42
SHMT2-223ENST00000556689 AK7Q96M32 723 aa17.68■□□□□ 0.42
SHMT2-223ENST00000556689 RGPD2P0DJD1 1756 aa17.67■□□□□ 0.42
SHMT2-223ENST00000556689 GPBP1L1Q9HC44 474 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-223ENST00000556689 SHANK3Q9BYB0 1731 aa17.67■□□□□ 0.42
SHMT2-223ENST00000556689 FLT4P35916 1363 aa17.66■□□□□ 0.42
SHMT2-223ENST00000556689 KIF24Q5T7B8 1368 aa17.66■□□□□ 0.42
SHMT2-223ENST00000556689 CDCA8Q53HL2 280 aa17.66■□□□□ 0.42
SHMT2-223ENST00000556689 PIGBQ92521 554 aa17.66■□□□□ 0.42
SHMT2-223ENST00000556689 CEP350Q5VT06 3117 aa17.65■□□□□ 0.42
SHMT2-223ENST00000556689 IFFO2Q5TF58 517 aa17.65■□□□□ 0.42
SHMT2-223ENST00000556689 ATP10DQ9P241 1426 aa17.64■□□□□ 0.42
SHMT2-223ENST00000556689 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.64■□□□□ 0.41
SHMT2-223ENST00000556689 PHF14O94880 888 aa17.64■□□□□ 0.41
SHMT2-223ENST00000556689 NKX1-1Q15270 411 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-223ENST00000556689 SPG7Q9UQ90 795 aa17.64■□□□□ 0.41
SHMT2-223ENST00000556689 SMIM5Q71RC9 77 aa17.63■□□□□ 0.41
SHMT2-223ENST00000556689 AMIGO3Q86WK7 504 aa17.63■□□□□ 0.41
SHMT2-223ENST00000556689 LOC102724428A0A0B4J2F2 783 aa17.62■□□□□ 0.41
SHMT2-223ENST00000556689 PPM1GO15355 546 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-223ENST00000556689 SSFA2P28290 1259 aa17.62■□□□□ 0.41
SHMT2-223ENST00000556689 SIK1P57059 783 aa17.62■□□□□ 0.41
SHMT2-223ENST00000556689 ZNF526Q8TF50 670 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-223ENST00000556689 CARD14Q9BXL6 1004 aa17.62■□□□□ 0.41
SHMT2-223ENST00000556689 EMILIN1Q9Y6C2 1016 aa17.62■□□□□ 0.41
SHMT2-223ENST00000556689 IGSF1Q8N6C5 1336 aa17.61■□□□□ 0.41
SHMT2-223ENST00000556689 TMOD3Q9NYL9 352 aa17.6■□□□□ 0.41
SHMT2-223ENST00000556689 WWC3Q9ULE0 1092 aa17.6■□□□□ 0.41
SHMT2-223ENST00000556689 NSD3Q9BZ95 1437 aa17.6■□□□□ 0.41
SHMT2-223ENST00000556689 C5P01031 1676 aa17.59■□□□□ 0.41
SHMT2-223ENST00000556689 LINC00116Q8NCU8 138 aa17.59■□□□□ 0.41
SHMT2-223ENST00000556689 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.59■□□□□ 0.41
SHMT2-223ENST00000556689 WASHC2AQ641Q2 1341 aa17.58■□□□□ 0.4
SHMT2-223ENST00000556689 HSPA6P17066 643 aa17.58■□□□□ 0.4
SHMT2-223ENST00000556689 ASAP1Q9ULH1 1129 aa17.58■□□□□ 0.4
SHMT2-223ENST00000556689 ADCY9O60503 1353 aa17.57■□□□□ 0.4
SHMT2-223ENST00000556689 GNPATO15228 680 aa17.57■□□□□ 0.4
SHMT2-223ENST00000556689 ATP6V1AP38606 617 aa17.57■□□□□ 0.4
SHMT2-223ENST00000556689 IFNL2Q8IZJ0 200 aa17.57■□□□□ 0.4
SHMT2-223ENST00000556689 EYA1Q99502 592 aa17.57■□□□□ 0.4
SHMT2-223ENST00000556689 C4BP0C0L5 1744 aa17.57■□□□□ 0.4
SHMT2-223ENST00000556689 PHKG2P15735 406 aa17.55■□□□□ 0.4
SHMT2-223ENST00000556689 ITPK1Q13572 414 aa17.55■□□□□ 0.4
SHMT2-223ENST00000556689 TAF1LQ8IZX4 1826 aa17.54■□□□□ 0.4
SHMT2-223ENST00000556689 ATG3Q9NT62 314 aa17.54■□□□□ 0.4
SHMT2-223ENST00000556689 NCAPD2Q15021 1401 aa17.54■□□□□ 0.4
SHMT2-223ENST00000556689 MMP10P09238 476 aa17.53■□□□□ 0.4
SHMT2-223ENST00000556689 TRAPPC3LQ5T215 181 aa17.53■□□□□ 0.4
SHMT2-223ENST00000556689 POLKQ9UBT6 870 aa17.53■□□□□ 0.4
SHMT2-223ENST00000556689 TGFB2P61812 414 aa17.52■□□□□ 0.4
SHMT2-223ENST00000556689 NLGN1Q8N2Q7 840 aa17.52■□□□□ 0.4
SHMT2-223ENST00000556689 RTCBQ9Y3I0 505 aaKnown RBP17.52■□□□□ 0.4
SHMT2-223ENST00000556689 KIF3CO14782 793 aa17.51■□□□□ 0.39
SHMT2-223ENST00000556689 ITGB4P16144 1822 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms