RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TXNRD1Q16881 649 aa14.53□□□□□ -0.08
SCFD1-220ENST00000556486 CABP2Q9NPB3 220 aa14.53□□□□□ -0.08
SCFD1-220ENST00000556486 COL18A1P39060 1754 aa14.52□□□□□ -0.08
SCFD1-220ENST00000556486 NUBP1P53384 320 aa14.52□□□□□ -0.09
SCFD1-220ENST00000556486 NLRP6P59044 892 aa14.52□□□□□ -0.09
SCFD1-220ENST00000556486 AXIN2Q9Y2T1 843 aa14.52□□□□□ -0.09
SCFD1-220ENST00000556486 SLC15A2Q16348 729 aa14.51□□□□□ -0.09
SCFD1-220ENST00000556486 PIK3C2AO00443 1686 aa14.51□□□□□ -0.09
SCFD1-220ENST00000556486 GOLGB1Q14789 3259 aaKnown RBP14.51□□□□□ -0.09
SCFD1-220ENST00000556486 CEP350Q5VT06 3117 aa14.5□□□□□ -0.09
SCFD1-220ENST00000556486 AATKQ6ZMQ8 1374 aa14.49□□□□□ -0.09
SCFD1-220ENST00000556486 C11orf95C9JLR9 678 aaPredicted RBP14.49□□□□□ -0.09
SCFD1-220ENST00000556486 DCAF8Q5TAQ9 597 aa14.49□□□□□ -0.09
SCFD1-220ENST00000556486 PELP1Q8IZL8 1130 aaKnown RBP14.49□□□□□ -0.09
SCFD1-220ENST00000556486 ACSBG1Q96GR2 724 aa14.49□□□□□ -0.09
SCFD1-220ENST00000556486 SLIT3O75094 1523 aa14.49□□□□□ -0.09
SCFD1-220ENST00000556486 CSB-PGBD3P0DP91 1061 aa14.48□□□□□ -0.09
SCFD1-220ENST00000556486 NBPF1Q3BBV0 1214 aa14.48□□□□□ -0.09
SCFD1-220ENST00000556486 SGIP1Q9BQI5 828 aa14.48□□□□□ -0.09
SCFD1-220ENST00000556486 MTFR1LQ9H019 292 aa14.48□□□□□ -0.09
SCFD1-220ENST00000556486 WDR17Q8IZU2 1322 aa14.47□□□□□ -0.09
SCFD1-220ENST00000556486 QRICH2Q9H0J4 1663 aa14.47□□□□□ -0.09
SCFD1-220ENST00000556486 GPR162Q16538 588 aa14.47□□□□□ -0.09
SCFD1-220ENST00000556486 ARXQ96QS3 562 aa14.47□□□□□ -0.09
SCFD1-220ENST00000556486 CABP1Q9NZU7 370 aa14.47□□□□□ -0.09
SCFD1-220ENST00000556486 TIMELESSQ9UNS1 1208 aa14.47□□□□□ -0.09
SCFD1-220ENST00000556486 USP6P35125 1406 aa14.46□□□□□ -0.09
SCFD1-220ENST00000556486 NHSQ6T4R5 1651 aa14.46□□□□□ -0.1
SCFD1-220ENST00000556486 TULP1O00294 542 aaPredicted RBP14.45□□□□□ -0.1
SCFD1-220ENST00000556486 CPSF1Q10570 1443 aaKnown RBP14.45□□□□□ -0.1
SCFD1-220ENST00000556486 ZNF827Q17R98 1081 aa14.45□□□□□ -0.1
SCFD1-220ENST00000556486 IFFO2Q5TF58 517 aa14.45□□□□□ -0.1
SCFD1-220ENST00000556486 BRD4O60885 1362 aaPredicted RBP14.45□□□□□ -0.1
SCFD1-220ENST00000556486 PAPPAQ13219 1627 aa14.44□□□□□ -0.1
SCFD1-220ENST00000556486 BTAF1O14981 1849 aa14.44□□□□□ -0.1
SCFD1-220ENST00000556486 STK25O00506 426 aa14.44□□□□□ -0.1
SCFD1-220ENST00000556486 GIGYF1O75420 1035 aaPredicted RBP14.44□□□□□ -0.1
SCFD1-220ENST00000556486 GTF3C3Q9Y5Q9 886 aa14.44□□□□□ -0.1
SCFD1-220ENST00000556486 KAT6BQ8WYB5 2073 aa14.43□□□□□ -0.1
SCFD1-220ENST00000556486 EXOC5O00471 708 aa14.43□□□□□ -0.1
SCFD1-220ENST00000556486 CENPJQ9HC77 1338 aaPredicted RBP14.42□□□□□ -0.1
SCFD1-220ENST00000556486 BCL9O00512 1426 aa14.41□□□□□ -0.1
SCFD1-220ENST00000556486 TNS2Q63HR2 1409 aa14.41□□□□□ -0.1
SCFD1-220ENST00000556486 SHANK3Q9BYB0 1731 aa14.41□□□□□ -0.1
SCFD1-220ENST00000556486 CDCA7Q9BWT1 371 aaPredicted RBP14.41□□□□□ -0.1
SCFD1-220ENST00000556486 CARD10Q9BWT7 1032 aa14.41□□□□□ -0.1
SCFD1-220ENST00000556486 TUBGCP6Q96RT7 1819 aa14.41□□□□□ -0.1
SCFD1-220ENST00000556486 KCNQ4P56696 695 aa14.4□□□□□ -0.1
SCFD1-220ENST00000556486 ARHGEF25Q86VW2 580 aa14.4□□□□□ -0.1
SCFD1-220ENST00000556486 NLGN2Q8NFZ4 835 aa14.4□□□□□ -0.1
SCFD1-220ENST00000556486 TRPM1Q7Z4N2 1603 aa14.4□□□□□ -0.1
SCFD1-220ENST00000556486 GABBR2O75899 941 aa14.39□□□□□ -0.11
SCFD1-220ENST00000556486 LRRC4BQ9NT99 713 aa14.39□□□□□ -0.11
SCFD1-220ENST00000556486 NFAT5O94916 1531 aa14.38□□□□□ -0.11
SCFD1-220ENST00000556486 ZNF579Q8NAF0 562 aaKnown RBP14.38□□□□□ -0.11
SCFD1-220ENST00000556486 TTC21BQ7Z4L5 1316 aa14.38□□□□□ -0.11
SCFD1-220ENST00000556486 MAP3K5Q99683 1374 aa14.37□□□□□ -0.11
SCFD1-220ENST00000556486 ABCC6O95255 1503 aa14.37□□□□□ -0.11
SCFD1-220ENST00000556486 NLRP2Q9NX02 1062 aa14.37□□□□□ -0.11
SCFD1-220ENST00000556486 FAM212AQ96EL1 285 aa14.36□□□□□ -0.11
SCFD1-220ENST00000556486 LTN1O94822 1766 aa14.36□□□□□ -0.11
SCFD1-220ENST00000556486 CCDC7Q96M83 1385 aa14.35□□□□□ -0.11
SCFD1-220ENST00000556486 L3MBTL2Q969R5 705 aa14.35□□□□□ -0.11
SCFD1-220ENST00000556486 YBX3P16989 372 aaKnown RBP eCLIP14.34□□□□□ -0.11
SCFD1-220ENST00000556486 POLD1P28340 1107 aa14.34□□□□□ -0.11
SCFD1-220ENST00000556486 KCNH5Q8NCM2 988 aa14.34□□□□□ -0.11
SCFD1-220ENST00000556486 PNPLA7Q6ZV29 1317 aa14.34□□□□□ -0.11
SCFD1-220ENST00000556486 CHRM1P11229 460 aaPredicted RBP14.33□□□□□ -0.12
SCFD1-220ENST00000556486 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.33□□□□□ -0.12
SCFD1-220ENST00000556486 RYDENQ9NUL5 291 aaKnown RBP14.33□□□□□ -0.12
SCFD1-220ENST00000556486 QSER1Q2KHR3 1735 aa14.32□□□□□ -0.12
SCFD1-220ENST00000556486 CLCN6P51797 869 aa14.32□□□□□ -0.12
SCFD1-220ENST00000556486 ZNF526Q8TF50 670 aaPredicted RBP14.32□□□□□ -0.12
SCFD1-220ENST00000556486 TFCP2L1Q9NZI6 479 aa14.32□□□□□ -0.12
SCFD1-220ENST00000556486 COL24A1Q17RW2 1714 aa14.32□□□□□ -0.12
SCFD1-220ENST00000556486 IL2RBP14784 551 aa14.31□□□□□ -0.12
SCFD1-220ENST00000556486 RASEFQ8IZ41 740 aa14.31□□□□□ -0.12
SCFD1-220ENST00000556486 DDX54Q8TDD1 881 aaKnown RBP14.31□□□□□ -0.12
SCFD1-220ENST00000556486 SYTL4Q96C24 671 aaPredicted RBP14.31□□□□□ -0.12
SCFD1-220ENST00000556486 EVC2Q86UK5 1308 aa14.31□□□□□ -0.12
SCFD1-220ENST00000556486 KTN1Q86UP2 1357 aaKnown RBP14.31□□□□□ -0.12
SCFD1-220ENST00000556486 ATP10DQ9P241 1426 aa14.31□□□□□ -0.12
SCFD1-220ENST00000556486 DOT1LQ8TEK3 1739 aa14.3□□□□□ -0.12
SCFD1-220ENST00000556486 MSL1Q68DK7 614 aa14.3□□□□□ -0.12
SCFD1-220ENST00000556486 ERICH6Q7L0X2 663 aa14.3□□□□□ -0.12
SCFD1-220ENST00000556486 STK24Q9Y6E0 443 aa14.3□□□□□ -0.12
SCFD1-220ENST00000556486 ERBB3P21860 1342 aa14.3□□□□□ -0.12
SCFD1-220ENST00000556486 SBNO2Q9Y2G9 1366 aa14.3□□□□□ -0.12
SCFD1-220ENST00000556486 MON2Q7Z3U7 1717 aa14.29□□□□□ -0.12
SCFD1-220ENST00000556486 TMEM132AQ24JP5 1023 aa14.29□□□□□ -0.12
SCFD1-220ENST00000556486 NME9Q86XW9 330 aa14.29□□□□□ -0.12
SCFD1-220ENST00000556486 ANKRD24Q8TF21 1146 aa14.29□□□□□ -0.12
SCFD1-220ENST00000556486 TSPYL2Q9H2G4 693 aaPredicted RBP14.29□□□□□ -0.12
SCFD1-220ENST00000556486 WWC3Q9ULE0 1092 aa14.29□□□□□ -0.12
SCFD1-220ENST00000556486 ROCK2O75116 1388 aaKnown RBP14.28□□□□□ -0.12
SCFD1-220ENST00000556486 TTC21AQ8NDW8 1320 aa14.28□□□□□ -0.12
SCFD1-220ENST00000556486 LTV1Q96GA3 475 aaPredicted RBP14.28□□□□□ -0.12
SCFD1-220ENST00000556486 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.27□□□□□ -0.13
SCFD1-220ENST00000556486 ZFP91Q96JP5 570 aaPredicted RBP14.27□□□□□ -0.13
SCFD1-220ENST00000556486 LY75O60449 1722 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms