RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 TSGA10IPQ3SY00 556 aa8.72□□□□□ -1.01
SRP54-211ENST00000556445 LCE2CQ5TA81 110 aa8.72□□□□□ -1.01
SRP54-211ENST00000556445 TRIM52Q96A61 297 aa8.72□□□□□ -1.01
SRP54-211ENST00000556445 CDCA7Q9BWT1 371 aaPredicted RBP8.72□□□□□ -1.01
SRP54-211ENST00000556445 CHIC2Q9UKJ5 165 aa8.72□□□□□ -1.01
SRP54-211ENST00000556445 TRAK2O60296 914 aa8.71□□□□□ -1.02
SRP54-211ENST00000556445 OSBPL3Q9H4L5 887 aa8.71□□□□□ -1.02
SRP54-211ENST00000556445 NXF1Q9UBU9 619 aaKnown RBP8.71□□□□□ -1.02
SRP54-211ENST00000556445 ATP5J2-PTCD1G3V325 749 aa8.7□□□□□ -1.02
SRP54-211ENST00000556445 RNF135Q8IUD6 432 aa8.7□□□□□ -1.02
SRP54-211ENST00000556445 ALG2Q9H553 416 aa8.7□□□□□ -1.02
SRP54-211ENST00000556445 PODXL2Q9NZ53 605 aa8.7□□□□□ -1.02
SRP54-211ENST00000556445 FIGNL2A6NMB9 653 aa8.69□□□□□ -1.02
SRP54-211ENST00000556445 WFS1O76024 890 aa8.69□□□□□ -1.02
SRP54-211ENST00000556445 SEMA3FQ13275 785 aa8.69□□□□□ -1.02
SRP54-211ENST00000556445 SLFNL1Q499Z3 407 aa8.69□□□□□ -1.02
SRP54-211ENST00000556445 FOXD4L5Q5VV16 416 aaPredicted RBP8.69□□□□□ -1.02
SRP54-211ENST00000556445 NPAS3Q8IXF0 933 aa8.69□□□□□ -1.02
SRP54-211ENST00000556445 RNF217Q8TC41 542 aa8.69□□□□□ -1.02
SRP54-211ENST00000556445 POM121CA8CG34 1229 aa8.68□□□□□ -1.02
SRP54-211ENST00000556445 H3BM21 787 aa8.68□□□□□ -1.02
SRP54-211ENST00000556445 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.68□□□□□ -1.02
SRP54-211ENST00000556445 WWC1Q8IX03 1113 aa8.68□□□□□ -1.02
SRP54-211ENST00000556445 CLUAP1Q96AJ1 413 aa8.68□□□□□ -1.02
SRP54-211ENST00000556445 POLMQ9NP87 494 aaPredicted RBP8.68□□□□□ -1.02
SRP54-211ENST00000556445 DOLKQ9UPQ8 538 aa8.68□□□□□ -1.02
SRP54-211ENST00000556445 VEGFBP49765 207 aa8.67□□□□□ -1.02
SRP54-211ENST00000556445 CYP2U1Q7Z449 544 aa8.67□□□□□ -1.02
SRP54-211ENST00000556445 FNBP4Q8N3X1 1017 aaPredicted RBP8.67□□□□□ -1.02
SRP54-211ENST00000556445 ADAMTS19Q8TE59 1207 aa8.67□□□□□ -1.02
SRP54-211ENST00000556445 A0A1W2PRU2 124 aa8.66□□□□□ -1.02
SRP54-211ENST00000556445 PIK3CDO00329 1044 aa8.66□□□□□ -1.02
SRP54-211ENST00000556445 RNF144AP50876 292 aaPredicted RBP8.65□□□□□ -1.02
SRP54-211ENST00000556445 PTSQ03393 145 aa8.65□□□□□ -1.02
SRP54-211ENST00000556445 PLPP7Q8NBV4 271 aa8.65□□□□□ -1.02
SRP54-211ENST00000556445 SHROOM4Q9ULL8 1493 aa8.64□□□□□ -1.03
SRP54-211ENST00000556445 MYCP01106 439 aaPredicted RBP8.64□□□□□ -1.03
SRP54-211ENST00000556445 CLN3Q13286 438 aa8.64□□□□□ -1.03
SRP54-211ENST00000556445 PROSER2Q86WR7 435 aaPredicted RBP8.64□□□□□ -1.03
SRP54-211ENST00000556445 ARHGEF10LQ9HCE6 1279 aa8.64□□□□□ -1.03
SRP54-211ENST00000556445 ERBB4Q15303 1308 aa8.63□□□□□ -1.03
SRP54-211ENST00000556445 MEN1O00255 615 aa8.63□□□□□ -1.03
SRP54-211ENST00000556445 PPFIA3O75145 1194 aa8.63□□□□□ -1.03
SRP54-211ENST00000556445 USP4Q13107 963 aa8.63□□□□□ -1.03
SRP54-211ENST00000556445 MAP7D1Q3KQU3 841 aa8.63□□□□□ -1.03
SRP54-211ENST00000556445 OXLD1Q5BKU9 147 aa8.63□□□□□ -1.03
SRP54-211ENST00000556445 SLC16A10Q8TF71 515 aa8.63□□□□□ -1.03
SRP54-211ENST00000556445 ESF1Q9H501 851 aaKnown RBP8.63□□□□□ -1.03
SRP54-211ENST00000556445 NACADO15069 1562 aa8.63□□□□□ -1.03
SRP54-211ENST00000556445 A6NJR5 290 aa8.62□□□□□ -1.03
SRP54-211ENST00000556445 GNRH1P01148 92 aa8.62□□□□□ -1.03
SRP54-211ENST00000556445 GPC1P35052 558 aa8.62□□□□□ -1.03
SRP54-211ENST00000556445 SENP3-EIF4A1A0A087X0R7 540 aa8.61□□□□□ -1.03
SRP54-211ENST00000556445 SLC35F4A4IF30 521 aa8.61□□□□□ -1.03
SRP54-211ENST00000556445 IL2RAP01589 272 aa8.61□□□□□ -1.03
SRP54-211ENST00000556445 LYSMD3Q7Z3D4 306 aa8.61□□□□□ -1.03
SRP54-211ENST00000556445 NFATC2IPQ8NCF5 419 aa8.61□□□□□ -1.03
SRP54-211ENST00000556445 RAB6BQ9NRW1 208 aa8.61□□□□□ -1.03
SRP54-211ENST00000556445 WIPF1O43516 503 aa8.6□□□□□ -1.03
SRP54-211ENST00000556445 VSIG8P0DPA2 414 aa8.6□□□□□ -1.03
SRP54-211ENST00000556445 HDGFL1Q5TGJ6 251 aa8.6□□□□□ -1.03
SRP54-211ENST00000556445 CCDC155Q8N6L0 562 aa8.6□□□□□ -1.03
SRP54-211ENST00000556445 IRF7Q92985 503 aa8.6□□□□□ -1.03
SRP54-211ENST00000556445 UCN2Q96RP3 112 aa8.6□□□□□ -1.03
SRP54-211ENST00000556445 GRIP2Q9C0E4 1043 aa8.6□□□□□ -1.03
SRP54-211ENST00000556445 HRH3Q9Y5N1 445 aa8.6□□□□□ -1.03
SRP54-211ENST00000556445 ABCC9O60706 1549 aa8.59□□□□□ -1.03
SRP54-211ENST00000556445 STAU1O95793 577 aaKnown RBP8.59□□□□□ -1.03
SRP54-211ENST00000556445 SKIP12755 728 aa8.59□□□□□ -1.03
SRP54-211ENST00000556445 PRICKLE2Q7Z3G6 844 aa8.59□□□□□ -1.03
SRP54-211ENST00000556445 CNKSR1Q969H4 720 aa8.59□□□□□ -1.03
SRP54-211ENST00000556445 SIRT1Q96EB6 747 aa8.59□□□□□ -1.03
SRP54-211ENST00000556445 XAGE2Q96GT9 111 aa8.59□□□□□ -1.03
SRP54-211ENST00000556445 NLRP3Q96P20 1036 aa8.59□□□□□ -1.03
SRP54-211ENST00000556445 ESYT1Q9BSJ8 1104 aa8.59□□□□□ -1.03
SRP54-211ENST00000556445 GMPRP36959 345 aa8.58□□□□□ -1.04
SRP54-211ENST00000556445 ETNK1Q9HBU6 452 aa8.58□□□□□ -1.04
SRP54-211ENST00000556445 RHOQP17081 205 aa8.57□□□□□ -1.04
SRP54-211ENST00000556445 SCNN1DP51172 638 aa8.57□□□□□ -1.04
SRP54-211ENST00000556445 FHDC1Q9C0D6 1143 aaPredicted RBP8.57□□□□□ -1.04
SRP54-211ENST00000556445 USP17L5A8MUK1 530 aa8.56□□□□□ -1.04
SRP54-211ENST00000556445 CENPCQ03188 943 aa8.56□□□□□ -1.04
SRP54-211ENST00000556445 SLC27A3Q5K4L6 730 aa8.56□□□□□ -1.04
SRP54-211ENST00000556445 GLMNQ92990 594 aa8.56□□□□□ -1.04
SRP54-211ENST00000556445 SPATA31C2B4DYI2 1134 aa8.55□□□□□ -1.04
SRP54-211ENST00000556445 LZTS3O60299 673 aaPredicted RBP8.55□□□□□ -1.04
SRP54-211ENST00000556445 ITGA6P23229 1130 aa8.55□□□□□ -1.04
SRP54-211ENST00000556445 POU4F2Q12837 409 aa8.55□□□□□ -1.04
SRP54-211ENST00000556445 NCOA4Q13772 614 aa8.55□□□□□ -1.04
SRP54-211ENST00000556445 EML3Q32P44 896 aa8.55□□□□□ -1.04
SRP54-211ENST00000556445 ESCO1Q5FWF5 840 aa8.55□□□□□ -1.04
SRP54-211ENST00000556445 TBC1D9Q6ZT07 1266 aa8.55□□□□□ -1.04
SRP54-211ENST00000556445 PCDHGA11Q9Y5H2 935 aa8.55□□□□□ -1.04
SRP54-211ENST00000556445 NBPF10Q6P3W6 841 aaKnown RBP8.54□□□□□ -1.04
SRP54-211ENST00000556445 DEPDC4Q8N2C3 294 aa8.54□□□□□ -1.04
SRP54-211ENST00000556445 NBPF15Q8N660 670 aa8.54□□□□□ -1.04
SRP54-211ENST00000556445 NANOS1Q8WY41 292 aaKnown RBP8.54□□□□□ -1.04
SRP54-211ENST00000556445 RB1CC1Q8TDY2 1594 aa8.53□□□□□ -1.04
SRP54-211ENST00000556445 WASLO00401 505 aaPredicted RBP8.53□□□□□ -1.04
SRP54-211ENST00000556445 INHAP05111 366 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms