RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 HOXC9P31274 260 aa13.24□□□□□ -0.29
SRP54-210ENST00000556380 CARD10Q9BWT7 1032 aa13.24□□□□□ -0.29
SRP54-210ENST00000556380 THRAP3Q9Y2W1 955 aaKnown RBP13.24□□□□□ -0.29
SRP54-210ENST00000556380 AMPHP49418 695 aa13.23□□□□□ -0.29
SRP54-210ENST00000556380 TOM1L2Q6ZVM7 507 aa13.23□□□□□ -0.29
SRP54-210ENST00000556380 ANKRD24Q8TF21 1146 aa13.23□□□□□ -0.29
SRP54-210ENST00000556380 USP35Q9P2H5 1018 aa13.23□□□□□ -0.29
SRP54-210ENST00000556380 KIF20BQ96Q89 1820 aa13.23□□□□□ -0.29
SRP54-210ENST00000556380 BLMP54132 1417 aaPredicted RBP13.22□□□□□ -0.29
SRP54-210ENST00000556380 RTL1A6NKG5 1358 aa13.22□□□□□ -0.29
SRP54-210ENST00000556380 KIF24Q5T7B8 1368 aa13.22□□□□□ -0.29
SRP54-210ENST00000556380 PELP1Q8IZL8 1130 aaKnown RBP13.22□□□□□ -0.29
SRP54-210ENST00000556380 POLKQ9UBT6 870 aa13.22□□□□□ -0.29
SRP54-210ENST00000556380 EMILIN1Q9Y6C2 1016 aa13.22□□□□□ -0.29
SRP54-210ENST00000556380 NPC1L1Q9UHC9 1359 aa13.21□□□□□ -0.29
SRP54-210ENST00000556380 HSP90AB2PQ58FF8 381 aa13.21□□□□□ -0.29
SRP54-210ENST00000556380 LTN1O94822 1766 aa13.2□□□□□ -0.3
SRP54-210ENST00000556380 RGPD5Q99666 1765 aa13.2□□□□□ -0.3
SRP54-210ENST00000556380 MAP3K13O43283 966 aa13.2□□□□□ -0.3
SRP54-210ENST00000556380 CSB-PGBD3P0DP91 1061 aa13.2□□□□□ -0.3
SRP54-210ENST00000556380 MORC1Q86VD1 984 aa13.2□□□□□ -0.3
SRP54-210ENST00000556380 EP400Q96L91 3159 aa13.2□□□□□ -0.3
SRP54-210ENST00000556380 THSD7AQ9UPZ6 1657 aa13.2□□□□□ -0.3
SRP54-210ENST00000556380 INSRP06213 1382 aa13.2□□□□□ -0.3
SRP54-210ENST00000556380 TNNT2P45379 298 aaPredicted RBP13.19□□□□□ -0.3
SRP54-210ENST00000556380 ASTLQ6HA08 431 aaPredicted RBP13.19□□□□□ -0.3
SRP54-210ENST00000556380 UPF1Q92900 1129 aaKnown RBP eCLIP13.19□□□□□ -0.3
SRP54-210ENST00000556380 NLRP2Q9NX02 1062 aa13.19□□□□□ -0.3
SRP54-210ENST00000556380 FLT4P35916 1363 aa13.19□□□□□ -0.3
SRP54-210ENST00000556380 ATMINO43313 823 aaPredicted RBP13.18□□□□□ -0.3
SRP54-210ENST00000556380 KRT27Q7Z3Y8 459 aa13.18□□□□□ -0.3
SRP54-210ENST00000556380 LTV1Q96GA3 475 aaPredicted RBP13.18□□□□□ -0.3
SRP54-210ENST00000556380 DISP2A7MBM2 1401 aa13.18□□□□□ -0.3
SRP54-210ENST00000556380 PEAK1Q9H792 1746 aa13.18□□□□□ -0.3
SRP54-210ENST00000556380 NBPF6Q5VWK0 638 aa13.17□□□□□ -0.3
SRP54-210ENST00000556380 NBPF4Q96M43 638 aa13.17□□□□□ -0.3
SRP54-210ENST00000556380 ANKRD26Q9UPS8 1709 aa13.16□□□□□ -0.3
SRP54-210ENST00000556380 SMG6Q86US8 1419 aaKnown RBP13.16□□□□□ -0.3
SRP54-210ENST00000556380 A0A0G2JS52 829 aa13.16□□□□□ -0.3
SRP54-210ENST00000556380 MYT1Q01538 1121 aa13.16□□□□□ -0.3
SRP54-210ENST00000556380 CC2D1BQ5T0F9 858 aaKnown RBP13.16□□□□□ -0.3
SRP54-210ENST00000556380 CDCA7Q9BWT1 371 aaPredicted RBP13.16□□□□□ -0.3
SRP54-210ENST00000556380 BRWD3Q6RI45 1802 aa13.16□□□□□ -0.3
SRP54-210ENST00000556380 PPM1GO15355 546 aaPredicted RBP13.15□□□□□ -0.3
SRP54-210ENST00000556380 VASPP50552 380 aaPredicted RBP13.14□□□□□ -0.31
SRP54-210ENST00000556380 FAM182BQ5T319 152 aa13.14□□□□□ -0.31
SRP54-210ENST00000556380 MAP2P11137 1827 aaKnown RBP13.13□□□□□ -0.31
SRP54-210ENST00000556380 IL2RBP14784 551 aa13.13□□□□□ -0.31
SRP54-210ENST00000556380 PDE3BQ13370 1112 aa13.13□□□□□ -0.31
SRP54-210ENST00000556380 EIF4A2Q14240 407 aaKnown RBP13.13□□□□□ -0.31
SRP54-210ENST00000556380 DDB1Q16531 1140 aa13.13□□□□□ -0.31
SRP54-210ENST00000556380 FAM212AQ96EL1 285 aa13.13□□□□□ -0.31
SRP54-210ENST00000556380 TRPC6Q9Y210 931 aa13.13□□□□□ -0.31
SRP54-210ENST00000556380 MTHFSP49914 203 aa13.12□□□□□ -0.31
SRP54-210ENST00000556380 DDX10Q13206 875 aaKnown RBP13.12□□□□□ -0.31
SRP54-210ENST00000556380 MARCH10Q8NA82 808 aaPredicted RBP13.12□□□□□ -0.31
SRP54-210ENST00000556380 EYA1Q99502 592 aa13.12□□□□□ -0.31
SRP54-210ENST00000556380 PARP4Q9UKK3 1724 aaKnown RBP13.12□□□□□ -0.31
SRP54-210ENST00000556380 NCAPD2Q15021 1401 aa13.12□□□□□ -0.31
SRP54-210ENST00000556380 EXOC5O00471 708 aa13.11□□□□□ -0.31
SRP54-210ENST00000556380 CCDC125Q86Z20 511 aa13.11□□□□□ -0.31
SRP54-210ENST00000556380 FAM208AQ9UK61 1670 aaKnown RBP13.1□□□□□ -0.31
SRP54-210ENST00000556380 IL13P35225 146 aa13.1□□□□□ -0.31
SRP54-210ENST00000556380 ATN1P54259 1190 aaPredicted RBP13.1□□□□□ -0.31
SRP54-210ENST00000556380 FAM196AQ6ZSG2 479 aa13.1□□□□□ -0.31
SRP54-210ENST00000556380 USHBP1Q8N6Y0 703 aa13.1□□□□□ -0.31
SRP54-210ENST00000556380 POTEB2H3BUK9 544 aa13.09□□□□□ -0.31
SRP54-210ENST00000556380 LRRC37A3O60309 1634 aa13.09□□□□□ -0.31
SRP54-210ENST00000556380 MEGF6O75095 1541 aa13.08□□□□□ -0.31
SRP54-210ENST00000556380 BCL9O00512 1426 aa13.08□□□□□ -0.32
SRP54-210ENST00000556380 TNS2Q63HR2 1409 aa13.08□□□□□ -0.32
SRP54-210ENST00000556380 CNGB1Q14028 1251 aaPredicted RBP13.08□□□□□ -0.32
SRP54-210ENST00000556380 KLHL34Q8N239 644 aa13.08□□□□□ -0.32
SRP54-210ENST00000556380 SLC39A7Q92504 469 aa13.08□□□□□ -0.32
SRP54-210ENST00000556380 BMP2KQ9NSY1 1161 aaPredicted RBP13.08□□□□□ -0.32
SRP54-210ENST00000556380 PCDHB13Q9Y5F0 798 aa13.08□□□□□ -0.32
SRP54-210ENST00000556380 IGSF1Q8N6C5 1336 aa13.08□□□□□ -0.32
SRP54-210ENST00000556380 RGPD2P0DJD1 1756 aa13.07□□□□□ -0.32
SRP54-210ENST00000556380 OVOS2A0A0G2JMS6 1433 aa13.07□□□□□ -0.32
SRP54-210ENST00000556380 WNK3Q9BYP7 1800 aa13.07□□□□□ -0.32
SRP54-210ENST00000556380 C7P10643 843 aa13.07□□□□□ -0.32
SRP54-210ENST00000556380 PPP2R1AP30153 589 aa13.07□□□□□ -0.32
SRP54-210ENST00000556380 DCAF8Q5TAQ9 597 aa13.07□□□□□ -0.32
SRP54-210ENST00000556380 SGIP1Q9BQI5 828 aa13.07□□□□□ -0.32
SRP54-210ENST00000556380 METRNQ9UJH8 293 aa13.07□□□□□ -0.32
SRP54-210ENST00000556380 ZNF316A6NFI3 1004 aaPredicted RBP13.06□□□□□ -0.32
SRP54-210ENST00000556380 ZCRB1Q8TBF4 217 aaKnown RBP13.06□□□□□ -0.32
SRP54-210ENST00000556380 RAPGEF4Q8WZA2 1011 aa13.06□□□□□ -0.32
SRP54-210ENST00000556380 PARD3Q8TEW0 1356 aa13.06□□□□□ -0.32
SRP54-210ENST00000556380 TRIM37O94972 964 aa13.05□□□□□ -0.32
SRP54-210ENST00000556380 TATP17735 454 aaPredicted RBP13.05□□□□□ -0.32
SRP54-210ENST00000556380 TIE1P35590 1138 aa13.05□□□□□ -0.32
SRP54-210ENST00000556380 COL3A1P02461 1466 aaPredicted RBP13.04□□□□□ -0.32
SRP54-210ENST00000556380 PTF1AQ7RTS3 328 aa13.04□□□□□ -0.32
SRP54-210ENST00000556380 DDX54Q8TDD1 881 aaKnown RBP13.04□□□□□ -0.32
SRP54-210ENST00000556380 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.04□□□□□ -0.323e-9■■■□□ 17.6
SRP54-210ENST00000556380 DIAPH1O60610 1272 aaKnown RBP13.03□□□□□ -0.32
SRP54-210ENST00000556380 DEFB132Q7Z7B7 95 aa13.03□□□□□ -0.32
SRP54-210ENST00000556380 AEBP1Q8IUX7 1158 aa13.03□□□□□ -0.32
SRP54-210ENST00000556380 KDRP35968 1356 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms