RNA–Protein interactions for RNA: ENST00000556343.1

ACTN1-218, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 274 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-218ENST00000556343 ABCA3Q99758 1704 aa12.03□□□□□ -0.48
ACTN1-218ENST00000556343 HSP90AB1P08238 724 aaKnown RBP12.03□□□□□ -0.48
ACTN1-218ENST00000556343 VPS72Q15906 364 aa12.03□□□□□ -0.48
ACTN1-218ENST00000556343 AKAP4Q5JQC9 854 aa12.03□□□□□ -0.48
ACTN1-218ENST00000556343 ZNF530Q6P9A1 599 aaPredicted RBP12.03□□□□□ -0.48
ACTN1-218ENST00000556343 ZCRB1Q8TBF4 217 aaKnown RBP12.03□□□□□ -0.48
ACTN1-218ENST00000556343 USP35Q9P2H5 1018 aa12.03□□□□□ -0.48
ACTN1-218ENST00000556343 NCAPD2Q15021 1401 aa12.03□□□□□ -0.48
ACTN1-218ENST00000556343 SENP3-EIF4A1A0A087X0R7 540 aa12.02□□□□□ -0.49
ACTN1-218ENST00000556343 E9PSI1 815 aa12.02□□□□□ -0.49
ACTN1-218ENST00000556343 IFNL2Q8IZJ0 200 aa12.02□□□□□ -0.49
ACTN1-218ENST00000556343 MYH16Q9H6N6 1097 aa12.02□□□□□ -0.49
ACTN1-218ENST00000556343 TRPC5Q9UL62 973 aaPredicted RBP12.02□□□□□ -0.49
ACTN1-218ENST00000556343 SLIT2O94813 1529 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 LMO7Q8WWI1 1683 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 RGPD1P0DJD0 1748 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 EXOC5O00471 708 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 PHF23Q9BUL5 403 aaPredicted RBP12.01□□□□□ -0.49
ACTN1-218ENST00000556343 TRIM35Q9UPQ4 493 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 AFF2P51816 1311 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 IL16Q14005 1332 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 SPATA31A1Q5TZJ5 1347 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 SPATA31A5Q5VU36 1347 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 SPATA31A7Q8IWB4 1347 aa12.01□□□□□ -0.49
ACTN1-218ENST00000556343 FAM208AQ9UK61 1670 aaKnown RBP12□□□□□ -0.49
ACTN1-218ENST00000556343 GNAI1P63096 354 aa12□□□□□ -0.49
ACTN1-218ENST00000556343 ZNF772Q68DY9 489 aaPredicted RBP12□□□□□ -0.49
ACTN1-218ENST00000556343 BARGINQ6ZT62 677 aa12□□□□□ -0.49
ACTN1-218ENST00000556343 ZNF521Q96K83 1311 aa11.99□□□□□ -0.49
ACTN1-218ENST00000556343 PCDH11XQ9BZA7 1347 aa11.99□□□□□ -0.49
ACTN1-218ENST00000556343 PCDH11YQ9BZA8 1340 aa11.99□□□□□ -0.49
ACTN1-218ENST00000556343 MAP3K5Q99683 1374 aa11.99□□□□□ -0.49
ACTN1-218ENST00000556343 LRP6O75581 1613 aa11.98□□□□□ -0.49
ACTN1-218ENST00000556343 SLFN5Q08AF3 891 aa11.98□□□□□ -0.49
ACTN1-218ENST00000556343 DDB1Q16531 1140 aa11.98□□□□□ -0.49
ACTN1-218ENST00000556343 QTRT2Q9H974 415 aaKnown RBP11.98□□□□□ -0.49
ACTN1-218ENST00000556343 IFT57Q9NWB7 429 aa11.98□□□□□ -0.49
ACTN1-218ENST00000556343 BABAM1Q9NWV8 329 aa11.98□□□□□ -0.49
ACTN1-218ENST00000556343 PHKG2P15735 406 aa11.97□□□□□ -0.49
ACTN1-218ENST00000556343 TEFQ10587 303 aa11.97□□□□□ -0.49
ACTN1-218ENST00000556343 DCAF5Q96JK2 942 aa11.97□□□□□ -0.49
ACTN1-218ENST00000556343 GJD4Q96KN9 370 aaPredicted RBP11.97□□□□□ -0.49
ACTN1-218ENST00000556343 CFAP44Q96MT7 982 aa11.97□□□□□ -0.49
ACTN1-218ENST00000556343 LAS1LQ9Y4W2 734 aaKnown RBP11.97□□□□□ -0.49
ACTN1-218ENST00000556343 RGPD5Q99666 1765 aa11.97□□□□□ -0.49
ACTN1-218ENST00000556343 NWD2Q9ULI1 1742 aa11.97□□□□□ -0.49
ACTN1-218ENST00000556343 BCL9LQ86UU0 1499 aa11.96□□□□□ -0.49
ACTN1-218ENST00000556343 OVOS2A0A0G2JMS6 1433 aa11.96□□□□□ -0.49
ACTN1-218ENST00000556343 A0A0G2JS52 829 aa11.96□□□□□ -0.49
ACTN1-218ENST00000556343 MYT1Q01538 1121 aa11.96□□□□□ -0.49
ACTN1-218ENST00000556343 TAF7Q15545 349 aaPredicted RBP11.96□□□□□ -0.49
ACTN1-218ENST00000556343 MCM10Q7L590 875 aa11.96□□□□□ -0.49
ACTN1-218ENST00000556343 DDX54Q8TDD1 881 aaKnown RBP11.96□□□□□ -0.49
ACTN1-218ENST00000556343 RNMTO43148 476 aaKnown RBP11.95□□□□□ -0.5
ACTN1-218ENST00000556343 MPRIPQ6WCQ1 1025 aa11.95□□□□□ -0.5
ACTN1-218ENST00000556343 CDCA7LQ96GN5 454 aa11.95□□□□□ -0.5
ACTN1-218ENST00000556343 ERVV-2B6SEH9 535 aa11.94□□□□□ -0.5
ACTN1-218ENST00000556343 CT47B1P0C2W7 299 aaPredicted RBP11.94□□□□□ -0.5
ACTN1-218ENST00000556343 DCTN1Q14203 1278 aa11.94□□□□□ -0.5
ACTN1-218ENST00000556343 NKX1-1Q15270 411 aaPredicted RBP11.94□□□□□ -0.5
ACTN1-218ENST00000556343 FAM98CQ17RN3 349 aaKnown RBP11.94□□□□□ -0.5
ACTN1-218ENST00000556343 IL17REQ8NFR9 667 aa11.94□□□□□ -0.5
ACTN1-218ENST00000556343 CHMP4AQ9BY43 222 aa11.94□□□□□ -0.5
ACTN1-218ENST00000556343 MEGF6O75095 1541 aa11.94□□□□□ -0.5
ACTN1-218ENST00000556343 PLCH1Q4KWH8 1693 aa11.94□□□□□ -0.5
ACTN1-218ENST00000556343 CHL1O00533 1208 aa11.93□□□□□ -0.5
ACTN1-218ENST00000556343 CYP27B1O15528 508 aa11.93□□□□□ -0.5
ACTN1-218ENST00000556343 CABP4P57796 275 aa11.93□□□□□ -0.5
ACTN1-218ENST00000556343 DUSP27Q5VZP5 1158 aa11.93□□□□□ -0.5
ACTN1-218ENST00000556343 TRMT2AQ8IZ69 625 aaKnown RBP11.93□□□□□ -0.5
ACTN1-218ENST00000556343 THUMPD2Q9BTF0 503 aaKnown RBP11.93□□□□□ -0.5
ACTN1-218ENST00000556343 TSPYL4Q9UJ04 414 aa11.93□□□□□ -0.5
ACTN1-218ENST00000556343 BTBD11A6QL63 1104 aa11.92□□□□□ -0.5
ACTN1-218ENST00000556343 ZNF853P0CG23 659 aa11.92□□□□□ -0.5
ACTN1-218ENST00000556343 RBM6P78332 1123 aaKnown RBP11.92□□□□□ -0.5
ACTN1-218ENST00000556343 LGR6Q9HBX8 967 aa11.92□□□□□ -0.5
ACTN1-218ENST00000556343 DISP2A7MBM2 1401 aa11.92□□□□□ -0.5
ACTN1-218ENST00000556343 ATRNO75882 1429 aa11.92□□□□□ -0.5
ACTN1-218ENST00000556343 RGPD2P0DJD1 1756 aa11.92□□□□□ -0.5
ACTN1-218ENST00000556343 ONECUT3O60422 494 aaPredicted RBP11.91□□□□□ -0.5
ACTN1-218ENST00000556343 ZNF428Q96B54 188 aa11.91□□□□□ -0.5
ACTN1-218ENST00000556343 SLC52A2Q9HAB3 445 aa11.91□□□□□ -0.5
ACTN1-218ENST00000556343 CEMIPQ8WUJ3 1361 aa11.91□□□□□ -0.5
ACTN1-218ENST00000556343 NRAPQ86VF7 1730 aa11.9□□□□□ -0.5
ACTN1-218ENST00000556343 SPINK5Q9NQ38 1064 aaPredicted RBP11.9□□□□□ -0.5
ACTN1-218ENST00000556343 MBIPQ9NS73 344 aa11.9□□□□□ -0.5
ACTN1-218ENST00000556343 PARP4Q9UKK3 1724 aaKnown RBP11.9□□□□□ -0.5
ACTN1-218ENST00000556343 SOS1Q07889 1333 aaPredicted RBP11.89□□□□□ -0.51
ACTN1-218ENST00000556343 FANCIQ9NVI1 1328 aa11.89□□□□□ -0.51
ACTN1-218ENST00000556343 RXRBP28702 533 aa11.89□□□□□ -0.51
ACTN1-218ENST00000556343 TTC5Q8N0Z6 440 aa11.89□□□□□ -0.51
ACTN1-218ENST00000556343 TSR2Q969E8 191 aaKnown RBP11.89□□□□□ -0.51
ACTN1-218ENST00000556343 TMOD3Q9NYL9 352 aa11.89□□□□□ -0.51
ACTN1-218ENST00000556343 TNS2Q63HR2 1409 aa11.88□□□□□ -0.51
ACTN1-218ENST00000556343 EXOSC9Q06265 439 aaKnown RBP11.88□□□□□ -0.51
ACTN1-218ENST00000556343 SEPT12Q8IYM1 358 aa11.88□□□□□ -0.51
ACTN1-218ENST00000556343 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.88□□□□□ -0.51
ACTN1-218ENST00000556343 NFATC2IPQ8NCF5 419 aa11.88□□□□□ -0.51
ACTN1-218ENST00000556343 RCAN3Q9UKA8 241 aa11.88□□□□□ -0.51
ACTN1-218ENST00000556343 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms