RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 CLDN10P78369 228 aa10.54□□□□□ -0.72
LINC00643-204ENST00000555934 SEPT12Q8IYM1 358 aa10.54□□□□□ -0.72
LINC00643-204ENST00000555934 OGFOD1Q8N543 542 aa10.54□□□□□ -0.72
LINC00643-204ENST00000555934 STK32AQ8WU08 396 aa10.54□□□□□ -0.72
LINC00643-204ENST00000555934 ZMIZ1Q9ULJ6 1067 aa10.54□□□□□ -0.72
LINC00643-204ENST00000555934 SCTRP47872 440 aa10.53□□□□□ -0.72
LINC00643-204ENST00000555934 TRIM26Q12899 539 aaPredicted RBP10.53□□□□□ -0.72
LINC00643-204ENST00000555934 TRAIPQ9BWF2 469 aa10.53□□□□□ -0.72
LINC00643-204ENST00000555934 J3QL48 77 aa10.52□□□□□ -0.73
LINC00643-204ENST00000555934 GTF2IP78347 998 aa10.52□□□□□ -0.73
LINC00643-204ENST00000555934 PSME1Q06323 249 aa10.52□□□□□ -0.73
LINC00643-204ENST00000555934 PTK7Q13308 1070 aa10.52□□□□□ -0.73
LINC00643-204ENST00000555934 AEBP1Q8IUX7 1158 aa10.52□□□□□ -0.73
LINC00643-204ENST00000555934 DNAAF2Q9NVR5 837 aaKnown RBP10.52□□□□□ -0.73
LINC00643-204ENST00000555934 KIAA1024Q9UPX6 916 aa10.52□□□□□ -0.73
LINC00643-204ENST00000555934 FAM196BA6NMK8 535 aa10.51□□□□□ -0.73
LINC00643-204ENST00000555934 TRIM50Q86XT4 487 aa10.51□□□□□ -0.73
LINC00643-204ENST00000555934 ZNF775Q96BV0 537 aaPredicted RBP10.51□□□□□ -0.73
LINC00643-204ENST00000555934 CYLDQ9NQC7 956 aa10.51□□□□□ -0.73
LINC00643-204ENST00000555934 WASF2Q9Y6W5 498 aa10.51□□□□□ -0.73
LINC00643-204ENST00000555934 NR3C2P08235 984 aa10.5□□□□□ -0.73
LINC00643-204ENST00000555934 SMPD1P17405 629 aa10.5□□□□□ -0.73
LINC00643-204ENST00000555934 USP4Q13107 963 aa10.5□□□□□ -0.73
LINC00643-204ENST00000555934 TMEM164Q5U3C3 297 aa10.5□□□□□ -0.73
LINC00643-204ENST00000555934 TMEM88BA6NKF7 163 aa10.49□□□□□ -0.73
LINC00643-204ENST00000555934 MYCP01106 439 aaPredicted RBP10.49□□□□□ -0.73
LINC00643-204ENST00000555934 ATP1A2P50993 1020 aa10.49□□□□□ -0.73
LINC00643-204ENST00000555934 DPYDQ12882 1025 aa10.49□□□□□ -0.73
LINC00643-204ENST00000555934 NR5A1Q13285 461 aa10.49□□□□□ -0.73
LINC00643-204ENST00000555934 ANKMY2Q8IV38 441 aa10.49□□□□□ -0.73
LINC00643-204ENST00000555934 ESF1Q9H501 851 aaKnown RBP10.49□□□□□ -0.73
LINC00643-204ENST00000555934 USTQ9Y2C2 406 aa10.49□□□□□ -0.73
LINC00643-204ENST00000555934 ZBTB7BO15156 539 aaPredicted RBP10.48□□□□□ -0.73
LINC00643-204ENST00000555934 NNTQ13423 1086 aa10.48□□□□□ -0.73
LINC00643-204ENST00000555934 ELOAQ14241 798 aaKnown RBP10.48□□□□□ -0.73
LINC00643-204ENST00000555934 PPP1R26Q5T8A7 1209 aaPredicted RBP10.48□□□□□ -0.73
LINC00643-204ENST00000555934 CCDC116Q8IYX3 515 aa10.48□□□□□ -0.73
LINC00643-204ENST00000555934 ZNF784Q8NCA9 323 aaPredicted RBP10.48□□□□□ -0.73
LINC00643-204ENST00000555934 TPCN2Q8NHX9 752 aa10.48□□□□□ -0.73
LINC00643-204ENST00000555934 FAM200AQ8TCP9 573 aa10.48□□□□□ -0.73
LINC00643-204ENST00000555934 SIRT1Q96EB6 747 aa10.48□□□□□ -0.73
LINC00643-204ENST00000555934 PDE4CQ08493 712 aa10.47□□□□□ -0.73
LINC00643-204ENST00000555934 PCDHGA11Q9Y5H2 935 aa10.47□□□□□ -0.73
LINC00643-204ENST00000555934 FAM187AA6NFU0 413 aa10.46□□□□□ -0.73
LINC00643-204ENST00000555934 LGR5O75473 907 aa10.46□□□□□ -0.73
LINC00643-204ENST00000555934 STAU1O95793 577 aaKnown RBP10.46□□□□□ -0.73
LINC00643-204ENST00000555934 DHX9Q08211 1270 aaKnown RBP10.46□□□□□ -0.73
LINC00643-204ENST00000555934 CCDC102BQ68D86 513 aa10.46□□□□□ -0.73
LINC00643-204ENST00000555934 CC2D2BQ6DHV5 1058 aa10.46□□□□□ -0.73
LINC00643-204ENST00000555934 SFI1A8K8P3 1242 aa10.45□□□□□ -0.74
LINC00643-204ENST00000555934 DGAT1O75907 488 aa10.45□□□□□ -0.74
LINC00643-204ENST00000555934 ERVK-9P63128 1117 aa10.45□□□□□ -0.74
LINC00643-204ENST00000555934 MYT1Q01538 1121 aa10.45□□□□□ -0.74
LINC00643-204ENST00000555934 CCDC125Q86Z20 511 aa10.45□□□□□ -0.74
LINC00643-204ENST00000555934 LARGE2Q8N3Y3 721 aa10.45□□□□□ -0.74
LINC00643-204ENST00000555934 RBM19Q9Y4C8 960 aaKnown RBP10.45□□□□□ -0.74
LINC00643-204ENST00000555934 HPS1Q92902 700 aa10.43□□□□□ -0.74
LINC00643-204ENST00000555934 OSBPL3Q9H4L5 887 aa10.43□□□□□ -0.74
LINC00643-204ENST00000555934 ZBTB7CA1YPR0 619 aa10.42□□□□□ -0.74
LINC00643-204ENST00000555934 LILRA1O75019 489 aa10.42□□□□□ -0.74
LINC00643-204ENST00000555934 DKK1O94907 266 aa10.42□□□□□ -0.74
LINC00643-204ENST00000555934 PKDCCQ504Y2 493 aa10.42□□□□□ -0.74
LINC00643-204ENST00000555934 SIX5Q8N196 739 aa10.42□□□□□ -0.74
LINC00643-204ENST00000555934 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.42□□□□□ -0.74
LINC00643-204ENST00000555934 ADD1P35611 737 aaKnown RBP10.41□□□□□ -0.74
LINC00643-204ENST00000555934 PGPEP1Q9NXJ5 209 aa10.41□□□□□ -0.74
LINC00643-204ENST00000555934 EMILIN1Q9Y6C2 1016 aa10.41□□□□□ -0.74
LINC00643-204ENST00000555934 SEC13P55735 322 aa10.4□□□□□ -0.74
LINC00643-204ENST00000555934 FAM69CQ0P6D2 419 aa10.4□□□□□ -0.74
LINC00643-204ENST00000555934 KCTD17Q8N5Z5 321 aa10.4□□□□□ -0.74
LINC00643-204ENST00000555934 KLF16Q9BXK1 252 aaPredicted RBP10.4□□□□□ -0.74
LINC00643-204ENST00000555934 PODXL2Q9NZ53 605 aa10.4□□□□□ -0.74
LINC00643-204ENST00000555934 SLAIN2Q9P270 581 aa10.4□□□□□ -0.74
LINC00643-204ENST00000555934 AVPP01185 164 aa10.39□□□□□ -0.75
LINC00643-204ENST00000555934 TIMP2P16035 220 aa10.39□□□□□ -0.75
LINC00643-204ENST00000555934 WDR4P57081 412 aaKnown RBP10.39□□□□□ -0.75
LINC00643-204ENST00000555934 CBLBQ13191 982 aa10.39□□□□□ -0.75
LINC00643-204ENST00000555934 ITPKCQ96DU7 683 aa10.39□□□□□ -0.75
LINC00643-204ENST00000555934 HINFPQ9BQA5 517 aa10.39□□□□□ -0.75
LINC00643-204ENST00000555934 ZIC2O95409 532 aaPredicted RBP10.38□□□□□ -0.75
LINC00643-204ENST00000555934 TSEN2Q8NCE0 465 aaKnown RBP10.38□□□□□ -0.75
LINC00643-204ENST00000555934 ZFAND3Q9H8U3 227 aa10.38□□□□□ -0.75
LINC00643-204ENST00000555934 RAB6BQ9NRW1 208 aa10.38□□□□□ -0.75
LINC00643-204ENST00000555934 ZNF358Q9NW07 568 aa10.38□□□□□ -0.75
LINC00643-204ENST00000555934 SERTAD1Q9UHV2 236 aa10.38□□□□□ -0.75
LINC00643-204ENST00000555934 POTECB2RU33 542 aa10.37□□□□□ -0.75
LINC00643-204ENST00000555934 PRMT3O60678 531 aa10.37□□□□□ -0.75
LINC00643-204ENST00000555934 BRD1O95696 1058 aa10.37□□□□□ -0.75
LINC00643-204ENST00000555934 PRIMPOLQ96LW4 560 aa10.37□□□□□ -0.75
LINC00643-204ENST00000555934 TMEM229AB2RXF0 380 aa10.36□□□□□ -0.75
LINC00643-204ENST00000555934 SCNN1DP51172 638 aa10.36□□□□□ -0.75
LINC00643-204ENST00000555934 GDF10P55107 478 aa10.36□□□□□ -0.75
LINC00643-204ENST00000555934 CYP2U1Q7Z449 544 aa10.36□□□□□ -0.75
LINC00643-204ENST00000555934 GAS2L2Q8NHY3 880 aa10.36□□□□□ -0.75
LINC00643-204ENST00000555934 ETNK1Q9HBU6 452 aa10.36□□□□□ -0.75
LINC00643-204ENST00000555934 SCNN1AP37088 669 aa10.35□□□□□ -0.75
LINC00643-204ENST00000555934 TRIM52Q96A61 297 aa10.35□□□□□ -0.75
LINC00643-204ENST00000555934 AGBL1Q96MI9 1066 aa10.35□□□□□ -0.75
LINC00643-204ENST00000555934 ARHGEF10LQ9HCE6 1279 aa10.35□□□□□ -0.75
LINC00643-204ENST00000555934 ATP2B4P23634 1241 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms