RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 PLEKHO1Q53GL0 409 aaPredicted RBP13.53□□□□□ -0.24
SYNE2-215ENST00000554997 POTEAQ6S8J7 498 aa13.53□□□□□ -0.24
SYNE2-215ENST00000554997 PHACTR3Q96KR7 559 aa13.53□□□□□ -0.24
SYNE2-215ENST00000554997 NEFMP07197 916 aa13.52□□□□□ -0.25
SYNE2-215ENST00000554997 SPG7Q9UQ90 795 aa13.52□□□□□ -0.25
SYNE2-215ENST00000554997 NRAPQ86VF7 1730 aa13.52□□□□□ -0.25
SYNE2-215ENST00000554997 RGPD1P0DJD0 1748 aa13.51□□□□□ -0.25
SYNE2-215ENST00000554997 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.51□□□□□ -0.25
SYNE2-215ENST00000554997 PLEKHG2Q9H7P9 1386 aa13.51□□□□□ -0.25
SYNE2-215ENST00000554997 ZCRB1Q8TBF4 217 aaKnown RBP13.51□□□□□ -0.25
SYNE2-215ENST00000554997 CCDC146Q8IYE0 955 aa13.5□□□□□ -0.25
SYNE2-215ENST00000554997 FAM208AQ9UK61 1670 aaKnown RBP13.5□□□□□ -0.25
SYNE2-215ENST00000554997 DISP2A7MBM2 1401 aa13.49□□□□□ -0.25
SYNE2-215ENST00000554997 DDB1Q16531 1140 aa13.49□□□□□ -0.25
SYNE2-215ENST00000554997 MTHFSDQ2M296 383 aaKnown RBP13.49□□□□□ -0.25
SYNE2-215ENST00000554997 SEPT12Q8IYM1 358 aa13.49□□□□□ -0.25
SYNE2-215ENST00000554997 MAPK8IP3Q9UPT6 1336 aa13.48□□□□□ -0.25
SYNE2-215ENST00000554997 GAS2L2Q8NHY3 880 aa13.48□□□□□ -0.25
SYNE2-215ENST00000554997 OVOS2A0A0G2JMS6 1433 aa13.47□□□□□ -0.25
SYNE2-215ENST00000554997 APAF1O14727 1248 aa13.47□□□□□ -0.25
SYNE2-215ENST00000554997 TMPOP42166 694 aaKnown RBP13.47□□□□□ -0.25
SYNE2-215ENST00000554997 NCBP3Q53F19 620 aaKnown RBP13.47□□□□□ -0.25
SYNE2-215ENST00000554997 MEGF6O75095 1541 aa13.47□□□□□ -0.25
SYNE2-215ENST00000554997 GLI3P10071 1580 aa13.46□□□□□ -0.25
SYNE2-215ENST00000554997 RGPD2P0DJD1 1756 aa13.46□□□□□ -0.25
SYNE2-215ENST00000554997 PDE3BQ13370 1112 aa13.46□□□□□ -0.25
SYNE2-215ENST00000554997 NFE2L2Q16236 605 aa13.46□□□□□ -0.25
SYNE2-215ENST00000554997 AKAP4Q5JQC9 854 aa13.46□□□□□ -0.25
SYNE2-215ENST00000554997 IFNL2Q8IZJ0 200 aa13.46□□□□□ -0.25
SYNE2-215ENST00000554997 NGEFQ8N5V2 710 aa13.46□□□□□ -0.25
SYNE2-215ENST00000554997 DDX54Q8TDD1 881 aaKnown RBP13.46□□□□□ -0.25
SYNE2-215ENST00000554997 A0A0G2JS52 829 aa13.45□□□□□ -0.26
SYNE2-215ENST00000554997 SOCS7O14512 581 aa13.45□□□□□ -0.26
SYNE2-215ENST00000554997 CYP27B1O15528 508 aa13.45□□□□□ -0.26
SYNE2-215ENST00000554997 HTATSF1O43719 755 aaKnown RBP13.45□□□□□ -0.26
SYNE2-215ENST00000554997 PHKG2P15735 406 aa13.45□□□□□ -0.26
SYNE2-215ENST00000554997 RIPK4P57078 832 aa13.45□□□□□ -0.26
SYNE2-215ENST00000554997 MYT1Q01538 1121 aa13.45□□□□□ -0.26
SYNE2-215ENST00000554997 NKX1-1Q15270 411 aaPredicted RBP13.45□□□□□ -0.26
SYNE2-215ENST00000554997 C1orf141Q5JVX7 400 aa13.45□□□□□ -0.26
SYNE2-215ENST00000554997 ZNF530Q6P9A1 599 aaPredicted RBP13.45□□□□□ -0.26
SYNE2-215ENST00000554997 PCDH11XQ9BZA7 1347 aa13.44□□□□□ -0.26
SYNE2-215ENST00000554997 PCDH11YQ9BZA8 1340 aa13.44□□□□□ -0.26
SYNE2-215ENST00000554997 GNAT3A8MTJ3 354 aa13.44□□□□□ -0.26
SYNE2-215ENST00000554997 HSP90AB1P08238 724 aaKnown RBP13.44□□□□□ -0.26
SYNE2-215ENST00000554997 MARCH10Q8NA82 808 aaPredicted RBP13.44□□□□□ -0.26
SYNE2-215ENST00000554997 NEUROD2Q15784 382 aa13.42□□□□□ -0.26
SYNE2-215ENST00000554997 CCDC27Q2M243 656 aa13.42□□□□□ -0.26
SYNE2-215ENST00000554997 KRT27Q7Z3Y8 459 aa13.42□□□□□ -0.26
SYNE2-215ENST00000554997 RTF1Q92541 710 aaKnown RBP13.42□□□□□ -0.26
SYNE2-215ENST00000554997 DCAF5Q96JK2 942 aa13.42□□□□□ -0.26
SYNE2-215ENST00000554997 RRP7AQ9Y3A4 280 aaKnown RBP13.42□□□□□ -0.26
SYNE2-215ENST00000554997 LMOD3Q0VAK6 560 aa13.41□□□□□ -0.26
SYNE2-215ENST00000554997 IL17REQ8NFR9 667 aa13.41□□□□□ -0.26
SYNE2-215ENST00000554997 LGR6Q9HBX8 967 aa13.41□□□□□ -0.26
SYNE2-215ENST00000554997 TRIM35Q9UPQ4 493 aa13.41□□□□□ -0.26
SYNE2-215ENST00000554997 MPRIPQ6WCQ1 1025 aa13.4□□□□□ -0.26
SYNE2-215ENST00000554997 TNS2Q63HR2 1409 aa13.39□□□□□ -0.27
SYNE2-215ENST00000554997 ERVV-2B6SEH9 535 aa13.39□□□□□ -0.27
SYNE2-215ENST00000554997 RNMTO43148 476 aaKnown RBP13.39□□□□□ -0.27
SYNE2-215ENST00000554997 MAP3K5Q99683 1374 aa13.39□□□□□ -0.27
SYNE2-215ENST00000554997 THSD7AQ9UPZ6 1657 aa13.39□□□□□ -0.27
SYNE2-215ENST00000554997 SENP3-EIF4A1A0A087X0R7 540 aa13.38□□□□□ -0.27
SYNE2-215ENST00000554997 FAM196AQ6ZSG2 479 aa13.38□□□□□ -0.27
SYNE2-215ENST00000554997 MCM10Q7L590 875 aa13.38□□□□□ -0.27
SYNE2-215ENST00000554997 WWC1Q8IX03 1113 aa13.38□□□□□ -0.27
SYNE2-215ENST00000554997 SALL2Q9Y467 1007 aaPredicted RBP13.38□□□□□ -0.27
SYNE2-215ENST00000554997 PARP4Q9UKK3 1724 aaKnown RBP13.38□□□□□ -0.27
SYNE2-215ENST00000554997 HNRNPUQ00839 825 aaKnown RBP eCLIP13.37□□□□□ -0.27
SYNE2-215ENST00000554997 DCTN1Q14203 1278 aa13.37□□□□□ -0.27
SYNE2-215ENST00000554997 WDR63Q8IWG1 891 aa13.37□□□□□ -0.27
SYNE2-215ENST00000554997 BCL9O00512 1426 aa13.37□□□□□ -0.27
SYNE2-215ENST00000554997 RGS12O14924 1447 aa13.37□□□□□ -0.27
SYNE2-215ENST00000554997 CEMIPQ8WUJ3 1361 aa13.36□□□□□ -0.27
SYNE2-215ENST00000554997 CALD1Q05682 793 aaKnown RBP13.36□□□□□ -0.27
SYNE2-215ENST00000554997 FAM182BQ5T319 152 aa13.36□□□□□ -0.27
SYNE2-215ENST00000554997 NFATC2IPQ8NCF5 419 aa13.36□□□□□ -0.27
SYNE2-215ENST00000554997 PKD1L3Q7Z443 1732 aa13.36□□□□□ -0.27
SYNE2-215ENST00000554997 BRWD3Q6RI45 1802 aa13.35□□□□□ -0.27
SYNE2-215ENST00000554997 PRIM1P49642 420 aaKnown RBP13.35□□□□□ -0.27
SYNE2-215ENST00000554997 CABP4P57796 275 aa13.35□□□□□ -0.27
SYNE2-215ENST00000554997 TEFQ10587 303 aa13.35□□□□□ -0.27
SYNE2-215ENST00000554997 TAF7Q15545 349 aaPredicted RBP13.35□□□□□ -0.27
SYNE2-215ENST00000554997 SLC52A2Q9HAB3 445 aa13.35□□□□□ -0.27
SYNE2-215ENST00000554997 ZNF521Q96K83 1311 aa13.35□□□□□ -0.27
SYNE2-215ENST00000554997 LRRC37A3O60309 1634 aa13.35□□□□□ -0.27
SYNE2-215ENST00000554997 THUMPD2Q9BTF0 503 aaKnown RBP13.34□□□□□ -0.27
SYNE2-215ENST00000554997 KDM6AO15550 1401 aaPredicted RBP13.33□□□□□ -0.28
SYNE2-215ENST00000554997 PIGBQ92521 554 aa13.33□□□□□ -0.28
SYNE2-215ENST00000554997 ACSBG1Q96GR2 724 aa13.33□□□□□ -0.28
SYNE2-215ENST00000554997 BABAM1Q9NWV8 329 aa13.33□□□□□ -0.28
SYNE2-215ENST00000554997 WNK3Q9BYP7 1800 aa13.33□□□□□ -0.28
SYNE2-215ENST00000554997 IL16Q14005 1332 aa13.33□□□□□ -0.28
SYNE2-215ENST00000554997 CHL1O00533 1208 aa13.32□□□□□ -0.28
SYNE2-215ENST00000554997 KCNQ2O43526 872 aa13.32□□□□□ -0.28
SYNE2-215ENST00000554997 ZNF853P0CG23 659 aa13.32□□□□□ -0.28
SYNE2-215ENST00000554997 CFAP44Q96MT7 982 aa13.32□□□□□ -0.28
SYNE2-215ENST00000554997 BCL11BQ9C0K0 894 aaPredicted RBP13.32□□□□□ -0.28
SYNE2-215ENST00000554997 TMOD3Q9NYL9 352 aa13.32□□□□□ -0.28
SYNE2-215ENST00000554997 BTBD11A6QL63 1104 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms