RNA–Protein interactions for RNA: ENST00000554756.1

RIPK3-204, Transcript of receptor interacting serine/threonine kinase 3, humanhuman

TSL 1 (best)

Gene RIPK3, Length 1,758 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK3-204ENST00000554756 DDX54Q8TDD1 881 aaKnown RBP16.22■□□□□ 0.19
RIPK3-204ENST00000554756 WNK3Q9BYP7 1800 aa16.21■□□□□ 0.19
RIPK3-204ENST00000554756 SULT6B1Q6IMI4 303 aa16.21■□□□□ 0.19
RIPK3-204ENST00000554756 ZCRB1Q8TBF4 217 aaKnown RBP16.21■□□□□ 0.19
RIPK3-204ENST00000554756 UPF1Q92900 1129 aaKnown RBP eCLIP16.21■□□□□ 0.19
RIPK3-204ENST00000554756 COL3A1P02461 1466 aaPredicted RBP16.21■□□□□ 0.19
RIPK3-204ENST00000554756 NCAPD2Q15021 1401 aa16.21■□□□□ 0.19
RIPK3-204ENST00000554756 TNS2Q63HR2 1409 aa16.21■□□□□ 0.19
RIPK3-204ENST00000554756 HMOX1P09601 288 aa16.2■□□□□ 0.18
RIPK3-204ENST00000554756 FAM196AQ6ZSG2 479 aa16.2■□□□□ 0.18
RIPK3-204ENST00000554756 OVOS2A0A0G2JMS6 1433 aa16.2■□□□□ 0.18
RIPK3-204ENST00000554756 MYBBP1AQ9BQG0 1328 aaKnown RBP16.19■□□□□ 0.18
RIPK3-204ENST00000554756 NUDCQ9Y266 331 aa16.18■□□□□ 0.18
RIPK3-204ENST00000554756 TRIM37O94972 964 aa16.17■□□□□ 0.18
RIPK3-204ENST00000554756 SPG7Q9UQ90 795 aa16.16■□□□□ 0.18
RIPK3-204ENST00000554756 U2AF1L5P0DN76 240 aaPredicted RBP16.15■□□□□ 0.18
RIPK3-204ENST00000554756 U2AF1Q01081 240 aaKnown RBP eCLIP16.15■□□□□ 0.18
RIPK3-204ENST00000554756 RGPD1P0DJD0 1748 aa16.15■□□□□ 0.18
RIPK3-204ENST00000554756 ACSBG1Q96GR2 724 aa16.15■□□□□ 0.18
RIPK3-204ENST00000554756 PLEKHO1Q53GL0 409 aaPredicted RBP16.14■□□□□ 0.17
RIPK3-204ENST00000554756 PCDH11XQ9BZA7 1347 aa16.14■□□□□ 0.17
RIPK3-204ENST00000554756 PCDH11YQ9BZA8 1340 aa16.14■□□□□ 0.17
RIPK3-204ENST00000554756 KDRP35968 1356 aa16.14■□□□□ 0.17
RIPK3-204ENST00000554756 CYP27B1O15528 508 aa16.13■□□□□ 0.17
RIPK3-204ENST00000554756 SF3B2Q13435 895 aaKnown RBP16.13■□□□□ 0.17
RIPK3-204ENST00000554756 SUPT16HQ9Y5B9 1047 aaKnown RBP16.13■□□□□ 0.17
RIPK3-204ENST00000554756 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.13■□□□□ 0.17
RIPK3-204ENST00000554756 PTF1AQ7RTS3 328 aa16.12■□□□□ 0.17
RIPK3-204ENST00000554756 KCNQ2O43526 872 aa16.11■□□□□ 0.17
RIPK3-204ENST00000554756 ZNF530Q6P9A1 599 aaPredicted RBP16.11■□□□□ 0.17
RIPK3-204ENST00000554756 CCDC125Q86Z20 511 aa16.11■□□□□ 0.17
RIPK3-204ENST00000554756 PRKAR2BP31323 418 aa16.1■□□□□ 0.17
RIPK3-204ENST00000554756 AMOTQ4VCS5 1084 aa16.1■□□□□ 0.17
RIPK3-204ENST00000554756 APBA3O96018 575 aa16.1■□□□□ 0.17
RIPK3-204ENST00000554756 PHKG2P15735 406 aa16.1■□□□□ 0.17
RIPK3-204ENST00000554756 DEFB132Q7Z7B7 95 aa16.1■□□□□ 0.17
RIPK3-204ENST00000554756 IFNL2Q8IZJ0 200 aa16.1■□□□□ 0.17
RIPK3-204ENST00000554756 RSPH6AQ9H0K4 717 aa16.1■□□□□ 0.17
RIPK3-204ENST00000554756 BCL9O00512 1426 aa16.09■□□□□ 0.17
RIPK3-204ENST00000554756 SHANK3Q9BYB0 1731 aa16.09■□□□□ 0.17
RIPK3-204ENST00000554756 SYTL4Q96C24 671 aaPredicted RBP16.09■□□□□ 0.17
RIPK3-204ENST00000554756 MRS2Q9HD23 443 aa16.09■□□□□ 0.17
RIPK3-204ENST00000554756 PRIM1P49642 420 aaKnown RBP16.08■□□□□ 0.17
RIPK3-204ENST00000554756 CCDC184Q52MB2 194 aa16.08■□□□□ 0.17
RIPK3-204ENST00000554756 BCL11BQ9C0K0 894 aaPredicted RBP16.08■□□□□ 0.17
RIPK3-204ENST00000554756 PKD1L3Q7Z443 1732 aa16.08■□□□□ 0.16
RIPK3-204ENST00000554756 FCHSD2O94868 740 aa16.08■□□□□ 0.16
RIPK3-204ENST00000554756 HNRNPUQ00839 825 aaKnown RBP eCLIP16.08■□□□□ 0.16
RIPK3-204ENST00000554756 MTHFSDQ2M296 383 aaKnown RBP16.08■□□□□ 0.16
RIPK3-204ENST00000554756 C1orf141Q5JVX7 400 aa16.08■□□□□ 0.16
RIPK3-204ENST00000554756 NEFLP07196 543 aa16.07■□□□□ 0.16
RIPK3-204ENST00000554756 BAG6P46379 1132 aa16.07■□□□□ 0.16
RIPK3-204ENST00000554756 EN1Q05925 392 aaPredicted RBP16.07■□□□□ 0.16
RIPK3-204ENST00000554756 PHACTR3Q96KR7 559 aa16.07■□□□□ 0.16
RIPK3-204ENST00000554756 PLEKHG2Q9H7P9 1386 aa16.07■□□□□ 0.16
RIPK3-204ENST00000554756 NKX1-1Q15270 411 aaPredicted RBP16.06■□□□□ 0.16
RIPK3-204ENST00000554756 WDR43Q15061 677 aaKnown RBP eCLIP16.05■□□□□ 0.16
RIPK3-204ENST00000554756 ZBED9Q6R2W3 1325 aa16.05■□□□□ 0.16
RIPK3-204ENST00000554756 MPRIPQ6WCQ1 1025 aa16.05■□□□□ 0.16
RIPK3-204ENST00000554756 HSP90AB1P08238 724 aaKnown RBP16.04■□□□□ 0.16
RIPK3-204ENST00000554756 AKAP4Q5JQC9 854 aa16.04■□□□□ 0.16
RIPK3-204ENST00000554756 EZH2Q15910 746 aaKnown RBP16.03■□□□□ 0.16
RIPK3-204ENST00000554756 GAS2L2Q8NHY3 880 aa16.03■□□□□ 0.16
RIPK3-204ENST00000554756 DCAF5Q96JK2 942 aa16.03■□□□□ 0.16
RIPK3-204ENST00000554756 TNS1Q9HBL0 1735 aaKnown RBP16.02■□□□□ 0.16
RIPK3-204ENST00000554756 NEFMP07197 916 aa16.02■□□□□ 0.15
RIPK3-204ENST00000554756 ADAMTS8Q9UP79 889 aa16.02■□□□□ 0.15
RIPK3-204ENST00000554756 DOT1LQ8TEK3 1739 aa16.02■□□□□ 0.15
RIPK3-204ENST00000554756 NHSQ6T4R5 1651 aa16.02■□□□□ 0.15
RIPK3-204ENST00000554756 SBF2Q86WG5 1849 aa16.01■□□□□ 0.15
RIPK3-204ENST00000554756 CCDC146Q8IYE0 955 aa16.01■□□□□ 0.15
RIPK3-204ENST00000554756 CAMKK2Q96RR4 588 aa16.01■□□□□ 0.15
RIPK3-204ENST00000554756 PLEKHF1Q96S99 279 aa16.01■□□□□ 0.15
RIPK3-204ENST00000554756 LGR6Q9HBX8 967 aa16.01■□□□□ 0.15
RIPK3-204ENST00000554756 KDM6AO15550 1401 aaPredicted RBP16.01■□□□□ 0.15
RIPK3-204ENST00000554756 PNNQ9H307 717 aaKnown RBP16■□□□□ 0.15
RIPK3-204ENST00000554756 RNMTO43148 476 aaKnown RBP16■□□□□ 0.15
RIPK3-204ENST00000554756 CABP4P57796 275 aa16■□□□□ 0.15
RIPK3-204ENST00000554756 PIGBQ92521 554 aa16■□□□□ 0.15
RIPK3-204ENST00000554756 TMOD3Q9NYL9 352 aa16■□□□□ 0.15
RIPK3-204ENST00000554756 MAPK8IP3Q9UPT6 1336 aa15.99■□□□□ 0.15
RIPK3-204ENST00000554756 GNAT3A8MTJ3 354 aa15.99■□□□□ 0.15
RIPK3-204ENST00000554756 TOGARAM1Q9Y4F4 1720 aa15.99■□□□□ 0.15
RIPK3-204ENST00000554756 MAP3K5Q99683 1374 aa15.99■□□□□ 0.15
RIPK3-204ENST00000554756 ERVV-2B6SEH9 535 aa15.98■□□□□ 0.15
RIPK3-204ENST00000554756 PLSCR1O15162 318 aa15.98■□□□□ 0.15
RIPK3-204ENST00000554756 ERICH6BQ5W0A0 696 aa15.98■□□□□ 0.15
RIPK3-204ENST00000554756 TXNRD1Q16881 649 aa15.96■□□□□ 0.15
RIPK3-204ENST00000554756 FAM9BQ8IZU0 186 aa15.96■□□□□ 0.15
RIPK3-204ENST00000554756 PROM2Q8N271 834 aa15.96■□□□□ 0.15
RIPK3-204ENST00000554756 NFATC2IPQ8NCF5 419 aa15.96■□□□□ 0.15
RIPK3-204ENST00000554756 IL17REQ8NFR9 667 aa15.96■□□□□ 0.15
RIPK3-204ENST00000554756 PNISRQ8TF01 805 aaKnown RBP15.96■□□□□ 0.15
RIPK3-204ENST00000554756 RUNDC1Q96C34 613 aa15.96■□□□□ 0.15
RIPK3-204ENST00000554756 NFE2L2Q16236 605 aa15.95■□□□□ 0.14
RIPK3-204ENST00000554756 ASAP1Q9ULH1 1129 aa15.95■□□□□ 0.14
RIPK3-204ENST00000554756 BTAF1O14981 1849 aa15.95■□□□□ 0.14
RIPK3-204ENST00000554756 KCNQ4P56696 695 aa15.95■□□□□ 0.14
RIPK3-204ENST00000554756 DCTN1Q14203 1278 aa15.95■□□□□ 0.14
RIPK3-204ENST00000554756 FKBP8Q14318 412 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms