RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.09■□□□□ 0.65
SHMT2-210ENST00000553950 LRRC37A3O60309 1634 aa19.09■□□□□ 0.65
SHMT2-210ENST00000553950 DISP2A7MBM2 1401 aa19.08■□□□□ 0.65
SHMT2-210ENST00000553950 SPATA31A1Q5TZJ5 1347 aa19.08■□□□□ 0.65
SHMT2-210ENST00000553950 SPATA31A5Q5VU36 1347 aa19.08■□□□□ 0.65
SHMT2-210ENST00000553950 SPATA31A7Q8IWB4 1347 aa19.08■□□□□ 0.65
SHMT2-210ENST00000553950 APAF1O14727 1248 aa19.08■□□□□ 0.64
SHMT2-210ENST00000553950 IL2RBP14784 551 aa19.08■□□□□ 0.64
SHMT2-210ENST00000553950 NFE2L2Q16236 605 aa19.08■□□□□ 0.64
SHMT2-210ENST00000553950 PLEKHO1Q53GL0 409 aaPredicted RBP19.08■□□□□ 0.64
SHMT2-210ENST00000553950 ATRNO75882 1429 aa19.08■□□□□ 0.64
SHMT2-210ENST00000553950 CCDC27Q2M243 656 aa19.07■□□□□ 0.64
SHMT2-210ENST00000553950 SPG7Q9UQ90 795 aa19.07■□□□□ 0.64
SHMT2-210ENST00000553950 TNS2Q63HR2 1409 aa19.07■□□□□ 0.64
SHMT2-210ENST00000553950 THSD7AQ9UPZ6 1657 aa19.06■□□□□ 0.64
SHMT2-210ENST00000553950 TMPOP42166 694 aaKnown RBP19.06■□□□□ 0.64
SHMT2-210ENST00000553950 TRPC5Q9UL62 973 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-210ENST00000553950 CCDC9Q9Y3X0 531 aaKnown RBP19.06■□□□□ 0.64
SHMT2-210ENST00000553950 MAP3K5Q99683 1374 aa19.06■□□□□ 0.64
SHMT2-210ENST00000553950 ADAMTS7Q9UKP4 1686 aa19.05■□□□□ 0.64
SHMT2-210ENST00000553950 CALD1Q05682 793 aaKnown RBP19.05■□□□□ 0.64
SHMT2-210ENST00000553950 SCN11AQ9UI33 1791 aa19.05■□□□□ 0.64
SHMT2-210ENST00000553950 PCDH11XQ9BZA7 1347 aa19.04■□□□□ 0.64
SHMT2-210ENST00000553950 PCDH11YQ9BZA8 1340 aa19.04■□□□□ 0.64
SHMT2-210ENST00000553950 GLI3P10071 1580 aa19.04■□□□□ 0.64
SHMT2-210ENST00000553950 ZNF772Q68DY9 489 aaPredicted RBP19.04■□□□□ 0.64
SHMT2-210ENST00000553950 BARGINQ6ZT62 677 aa19.04■□□□□ 0.64
SHMT2-210ENST00000553950 HTATSF1O43719 755 aaKnown RBP19.03■□□□□ 0.64
SHMT2-210ENST00000553950 C1orf141Q5JVX7 400 aa19.03■□□□□ 0.64
SHMT2-210ENST00000553950 PHACTR3Q96KR7 559 aa19.03■□□□□ 0.64
SHMT2-210ENST00000553950 RIPK4P57078 832 aa19.02■□□□□ 0.64
SHMT2-210ENST00000553950 PDE3BQ13370 1112 aa19.02■□□□□ 0.64
SHMT2-210ENST00000553950 RTF1Q92541 710 aaKnown RBP19.02■□□□□ 0.64
SHMT2-210ENST00000553950 USP35Q9P2H5 1018 aa19.02■□□□□ 0.64
SHMT2-210ENST00000553950 HSP90AB1P08238 724 aaKnown RBP19.01■□□□□ 0.63
SHMT2-210ENST00000553950 AKAP4Q5JQC9 854 aa19.01■□□□□ 0.63
SHMT2-210ENST00000553950 ZNF530Q6P9A1 599 aaPredicted RBP19.01■□□□□ 0.63
SHMT2-210ENST00000553950 MTHFSDQ2M296 383 aaKnown RBP19■□□□□ 0.63
SHMT2-210ENST00000553950 PHF23Q9BUL5 403 aaPredicted RBP19■□□□□ 0.63
SHMT2-210ENST00000553950 GNAT3A8MTJ3 354 aa18.99■□□□□ 0.63
SHMT2-210ENST00000553950 ZCRB1Q8TBF4 217 aaKnown RBP18.99■□□□□ 0.63
SHMT2-210ENST00000553950 ZNF521Q96K83 1311 aa18.99■□□□□ 0.63
SHMT2-210ENST00000553950 SIPA1L3O60292 1781 aaPredicted RBP18.98■□□□□ 0.63
SHMT2-210ENST00000553950 NEUROD2Q15784 382 aa18.98■□□□□ 0.63
SHMT2-210ENST00000553950 WDR63Q8IWG1 891 aa18.98■□□□□ 0.63
SHMT2-210ENST00000553950 WWC1Q8IX03 1113 aa18.98■□□□□ 0.63
SHMT2-210ENST00000553950 IFNL2Q8IZJ0 200 aa18.98■□□□□ 0.63
SHMT2-210ENST00000553950 RRP7AQ9Y3A4 280 aaKnown RBP18.98■□□□□ 0.63
SHMT2-210ENST00000553950 IL16Q14005 1332 aa18.98■□□□□ 0.63
SHMT2-210ENST00000553950 MRC1P22897 1456 aa18.97■□□□□ 0.63
SHMT2-210ENST00000553950 GJD4Q96KN9 370 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-210ENST00000553950 CENPBP07199 599 aaPredicted RBP18.95■□□□□ 0.62
SHMT2-210ENST00000553950 GOLGA2Q08379 1002 aa18.95■□□□□ 0.62
SHMT2-210ENST00000553950 SALL2Q9Y467 1007 aaPredicted RBP18.95■□□□□ 0.62
SHMT2-210ENST00000553950 DOT1LQ8TEK3 1739 aa18.94■□□□□ 0.62
SHMT2-210ENST00000553950 EXOC5O00471 708 aa18.94■□□□□ 0.62
SHMT2-210ENST00000553950 PHKG2P15735 406 aa18.94■□□□□ 0.62
SHMT2-210ENST00000553950 DDB1Q16531 1140 aa18.94■□□□□ 0.62
SHMT2-210ENST00000553950 TRIM35Q9UPQ4 493 aa18.94■□□□□ 0.62
SHMT2-210ENST00000553950 CEMIPQ8WUJ3 1361 aa18.93■□□□□ 0.62
SHMT2-210ENST00000553950 E9PSI1 815 aa18.93■□□□□ 0.62
SHMT2-210ENST00000553950 QTRT2Q9H974 415 aaKnown RBP18.93■□□□□ 0.62
SHMT2-210ENST00000553950 TOGARAM1Q9Y4F4 1720 aa18.93■□□□□ 0.62
SHMT2-210ENST00000553950 KDM3BQ7LBC6 1761 aa18.93■□□□□ 0.62
SHMT2-210ENST00000553950 FAM98CQ17RN3 349 aaKnown RBP18.92■□□□□ 0.62
SHMT2-210ENST00000553950 DCAF5Q96JK2 942 aa18.92■□□□□ 0.62
SHMT2-210ENST00000553950 MYH16Q9H6N6 1097 aa18.92■□□□□ 0.62
SHMT2-210ENST00000553950 ITGB4P16144 1822 aa18.91■□□□□ 0.62
SHMT2-210ENST00000553950 A0A0G2JS52 829 aa18.91■□□□□ 0.62
SHMT2-210ENST00000553950 RBM6P78332 1123 aaKnown RBP18.91■□□□□ 0.62
SHMT2-210ENST00000553950 MYT1Q01538 1121 aa18.91■□□□□ 0.62
SHMT2-210ENST00000553950 KDM6AO15550 1401 aaPredicted RBP18.91■□□□□ 0.62
SHMT2-210ENST00000553950 GNAI1P63096 354 aa18.9■□□□□ 0.62
SHMT2-210ENST00000553950 IFT57Q9NWB7 429 aa18.9■□□□□ 0.62
SHMT2-210ENST00000553950 BABAM1Q9NWV8 329 aa18.9■□□□□ 0.62
SHMT2-210ENST00000553950 BRWD3Q6RI45 1802 aa18.89■□□□□ 0.61
SHMT2-210ENST00000553950 CYP27B1O15528 508 aa18.89■□□□□ 0.61
SHMT2-210ENST00000553950 TEFQ10587 303 aa18.89■□□□□ 0.61
SHMT2-210ENST00000553950 NKX1-1Q15270 411 aaPredicted RBP18.89■□□□□ 0.61
SHMT2-210ENST00000553950 PAPPAQ13219 1627 aa18.89■□□□□ 0.61
SHMT2-210ENST00000553950 RNMTO43148 476 aaKnown RBP18.88■□□□□ 0.61
SHMT2-210ENST00000553950 ONECUT3O60422 494 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-210ENST00000553950 SENP3-EIF4A1A0A087X0R7 540 aa18.87■□□□□ 0.61
SHMT2-210ENST00000553950 NHSQ6T4R5 1651 aa18.87■□□□□ 0.61
SHMT2-210ENST00000553950 MCM10Q7L590 875 aa18.87■□□□□ 0.61
SHMT2-210ENST00000553950 DDX54Q8TDD1 881 aaKnown RBP18.87■□□□□ 0.61
SHMT2-210ENST00000553950 BCL9O00512 1426 aa18.86■□□□□ 0.61
SHMT2-210ENST00000553950 CFAP44Q96MT7 982 aa18.86■□□□□ 0.61
SHMT2-210ENST00000553950 KAT6BQ8WYB5 2073 aa18.86■□□□□ 0.61
SHMT2-210ENST00000553950 ERVV-2B6SEH9 535 aa18.85■□□□□ 0.61
SHMT2-210ENST00000553950 SLFN5Q08AF3 891 aa18.85■□□□□ 0.61
SHMT2-210ENST00000553950 MPRIPQ6WCQ1 1025 aa18.85■□□□□ 0.61
SHMT2-210ENST00000553950 SBF2Q86WG5 1849 aa18.84■□□□□ 0.61
SHMT2-210ENST00000553950 UBR2Q8IWV8 1755 aa18.84■□□□□ 0.61
SHMT2-210ENST00000553950 RXRBP28702 533 aa18.84■□□□□ 0.61
SHMT2-210ENST00000553950 DCTN1Q14203 1278 aa18.84■□□□□ 0.61
SHMT2-210ENST00000553950 IL17REQ8NFR9 667 aa18.84■□□□□ 0.61
SHMT2-210ENST00000553950 TAF7Q15545 349 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-210ENST00000553950 SEPT12Q8IYM1 358 aa18.83■□□□□ 0.6
SHMT2-210ENST00000553950 THUMPD2Q9BTF0 503 aaKnown RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms