RNA–Protein interactions for RNA: ENST00000553656.5

TUBB3-202, Transcript of tubulin beta 3 class III, humanhuman

TSL 4

Gene TUBB3, Length 550 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBB3-202ENST00000553656 AEBP1Q8IUX7 1158 aa18.51■□□□□ 0.55
TUBB3-202ENST00000553656 SPG7Q9UQ90 795 aa18.51■□□□□ 0.55
TUBB3-202ENST00000553656 KDRP35968 1356 aa18.51■□□□□ 0.55
TUBB3-202ENST00000553656 U2AF1L5P0DN76 240 aaPredicted RBP18.5■□□□□ 0.55
TUBB3-202ENST00000553656 U2AF1Q01081 240 aaKnown RBP eCLIP18.5■□□□□ 0.55
TUBB3-202ENST00000553656 FAM182BQ5T319 152 aa18.5■□□□□ 0.55
TUBB3-202ENST00000553656 FAM196AQ6ZSG2 479 aa18.5■□□□□ 0.55
TUBB3-202ENST00000553656 DDX54Q8TDD1 881 aaKnown RBP18.5■□□□□ 0.55
TUBB3-202ENST00000553656 PLEKHG2Q9H7P9 1386 aa18.5■□□□□ 0.55
TUBB3-202ENST00000553656 PCDH11XQ9BZA7 1347 aa18.49■□□□□ 0.55
TUBB3-202ENST00000553656 PCDH11YQ9BZA8 1340 aa18.49■□□□□ 0.55
TUBB3-202ENST00000553656 PLEKHO1Q53GL0 409 aaPredicted RBP18.48■□□□□ 0.55
TUBB3-202ENST00000553656 MARCH10Q8NA82 808 aaPredicted RBP18.48■□□□□ 0.55
TUBB3-202ENST00000553656 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.48■□□□□ 0.55
TUBB3-202ENST00000553656 AMOTQ4VCS5 1084 aa18.47■□□□□ 0.55
TUBB3-202ENST00000553656 PKD1L3Q7Z443 1732 aa18.46■□□□□ 0.55
TUBB3-202ENST00000553656 NEFMP07197 916 aa18.45■□□□□ 0.54
TUBB3-202ENST00000553656 WDR43Q15061 677 aaKnown RBP eCLIP18.45■□□□□ 0.54
TUBB3-202ENST00000553656 SOCS7O14512 581 aa18.44■□□□□ 0.54
TUBB3-202ENST00000553656 SF3B2Q13435 895 aaKnown RBP18.44■□□□□ 0.54
TUBB3-202ENST00000553656 SHANK3Q9BYB0 1731 aa18.43■□□□□ 0.54
TUBB3-202ENST00000553656 FCHSD2O94868 740 aa18.43■□□□□ 0.54
TUBB3-202ENST00000553656 C1orf141Q5JVX7 400 aa18.43■□□□□ 0.54
TUBB3-202ENST00000553656 ZNF530Q6P9A1 599 aaPredicted RBP18.43■□□□□ 0.54
TUBB3-202ENST00000553656 PNNQ9H307 717 aaKnown RBP18.43■□□□□ 0.54
TUBB3-202ENST00000553656 BCL9O00512 1426 aa18.42■□□□□ 0.54
TUBB3-202ENST00000553656 PRKAR2BP31323 418 aa18.42■□□□□ 0.54
TUBB3-202ENST00000553656 DIEXFQ68CQ4 756 aaKnown RBP18.42■□□□□ 0.54
TUBB3-202ENST00000553656 CCDC125Q86Z20 511 aa18.42■□□□□ 0.54
TUBB3-202ENST00000553656 IFNL2Q8IZJ0 200 aa18.42■□□□□ 0.54
TUBB3-202ENST00000553656 RSPH6AQ9H0K4 717 aa18.42■□□□□ 0.54
TUBB3-202ENST00000553656 CYP27B1O15528 508 aa18.41■□□□□ 0.54
TUBB3-202ENST00000553656 TRIM37O94972 964 aa18.41■□□□□ 0.54
TUBB3-202ENST00000553656 UPF1Q92900 1129 aaKnown RBP eCLIP18.41■□□□□ 0.54
TUBB3-202ENST00000553656 MRS2Q9HD23 443 aa18.41■□□□□ 0.54
TUBB3-202ENST00000553656 HSP90AB1P08238 724 aaKnown RBP18.4■□□□□ 0.54
TUBB3-202ENST00000553656 PHKG2P15735 406 aa18.39■□□□□ 0.53
TUBB3-202ENST00000553656 GAS2L2Q8NHY3 880 aa18.39■□□□□ 0.53
TUBB3-202ENST00000553656 ACSBG1Q96GR2 724 aa18.39■□□□□ 0.53
TUBB3-202ENST00000553656 MAPK8IP3Q9UPT6 1336 aa18.39■□□□□ 0.53
TUBB3-202ENST00000553656 SYTL4Q96C24 671 aaPredicted RBP18.38■□□□□ 0.53
TUBB3-202ENST00000553656 BCL11BQ9C0K0 894 aaPredicted RBP18.37■□□□□ 0.53
TUBB3-202ENST00000553656 NKX1-1Q15270 411 aaPredicted RBP18.36■□□□□ 0.53
TUBB3-202ENST00000553656 MTHFSDQ2M296 383 aaKnown RBP18.36■□□□□ 0.53
TUBB3-202ENST00000553656 AKAP4Q5JQC9 854 aa18.36■□□□□ 0.53
TUBB3-202ENST00000553656 NHSQ6T4R5 1651 aa18.36■□□□□ 0.53
TUBB3-202ENST00000553656 DOT1LQ8TEK3 1739 aa18.36■□□□□ 0.53
TUBB3-202ENST00000553656 SBF2Q86WG5 1849 aa18.35■□□□□ 0.53
TUBB3-202ENST00000553656 BAG6P46379 1132 aa18.35■□□□□ 0.53
TUBB3-202ENST00000553656 DCAF5Q96JK2 942 aa18.35■□□□□ 0.53
TUBB3-202ENST00000553656 APBA3O96018 575 aa18.34■□□□□ 0.53
TUBB3-202ENST00000553656 PRIM1P49642 420 aaKnown RBP18.34■□□□□ 0.53
TUBB3-202ENST00000553656 CCDC184Q52MB2 194 aa18.34■□□□□ 0.53
TUBB3-202ENST00000553656 PHACTR3Q96KR7 559 aa18.34■□□□□ 0.53
TUBB3-202ENST00000553656 TNS1Q9HBL0 1735 aaKnown RBP18.34■□□□□ 0.53
TUBB3-202ENST00000553656 KCNQ2O43526 872 aa18.33■□□□□ 0.52
TUBB3-202ENST00000553656 ADAMTS8Q9UP79 889 aa18.33■□□□□ 0.52
TUBB3-202ENST00000553656 KAT6BQ8WYB5 2073 aa18.33■□□□□ 0.52
TUBB3-202ENST00000553656 EP400Q96L91 3159 aa18.32■□□□□ 0.52
TUBB3-202ENST00000553656 MAP3K5Q99683 1374 aa18.32■□□□□ 0.52
TUBB3-202ENST00000553656 GNAT3A8MTJ3 354 aa18.31■□□□□ 0.52
TUBB3-202ENST00000553656 MPRIPQ6WCQ1 1025 aa18.31■□□□□ 0.52
TUBB3-202ENST00000553656 PLEKHF1Q96S99 279 aa18.31■□□□□ 0.52
TUBB3-202ENST00000553656 TMOD3Q9NYL9 352 aa18.31■□□□□ 0.52
TUBB3-202ENST00000553656 ERVV-2B6SEH9 535 aa18.3■□□□□ 0.52
TUBB3-202ENST00000553656 CCDC146Q8IYE0 955 aa18.3■□□□□ 0.52
TUBB3-202ENST00000553656 RTF1Q92541 710 aaKnown RBP18.3■□□□□ 0.52
TUBB3-202ENST00000553656 RUNDC1Q96C34 613 aa18.3■□□□□ 0.52
TUBB3-202ENST00000553656 KDM6AO15550 1401 aaPredicted RBP18.3■□□□□ 0.52
TUBB3-202ENST00000553656 TOGARAM1Q9Y4F4 1720 aa18.29■□□□□ 0.52
TUBB3-202ENST00000553656 CABP4P57796 275 aa18.29■□□□□ 0.52
TUBB3-202ENST00000553656 PTF1AQ7RTS3 328 aa18.29■□□□□ 0.52
TUBB3-202ENST00000553656 DEFB132Q7Z7B7 95 aa18.29■□□□□ 0.52
TUBB3-202ENST00000553656 PNISRQ8TF01 805 aaKnown RBP18.29■□□□□ 0.52
TUBB3-202ENST00000553656 CCER2I3L3R5 266 aa18.28■□□□□ 0.52
TUBB3-202ENST00000553656 NFE2L2Q16236 605 aa18.28■□□□□ 0.52
TUBB3-202ENST00000553656 BTAF1O14981 1849 aa18.28■□□□□ 0.52
TUBB3-202ENST00000553656 RNMTO43148 476 aaKnown RBP18.27■□□□□ 0.52
TUBB3-202ENST00000553656 EN1Q05925 392 aaPredicted RBP18.27■□□□□ 0.52
TUBB3-202ENST00000553656 PLSCR1O15162 318 aa18.26■□□□□ 0.51
TUBB3-202ENST00000553656 SCN11AQ9UI33 1791 aa18.26■□□□□ 0.51
TUBB3-202ENST00000553656 ITGB4P16144 1822 aa18.26■□□□□ 0.51
TUBB3-202ENST00000553656 HTATSF1O43719 755 aaKnown RBP18.25■□□□□ 0.51
TUBB3-202ENST00000553656 LMOD3Q0VAK6 560 aa18.25■□□□□ 0.51
TUBB3-202ENST00000553656 TEFQ10587 303 aa18.25■□□□□ 0.51
TUBB3-202ENST00000553656 FAM9BQ8IZU0 186 aa18.25■□□□□ 0.51
TUBB3-202ENST00000553656 PIGBQ92521 554 aa18.25■□□□□ 0.51
TUBB3-202ENST00000553656 LGR6Q9HBX8 967 aa18.25■□□□□ 0.51
TUBB3-202ENST00000553656 MIER1Q8N108 512 aa18.24■□□□□ 0.51
TUBB3-202ENST00000553656 SMARCC1Q92922 1105 aaPredicted RBP18.24■□□□□ 0.51
TUBB3-202ENST00000553656 SLC52A2Q9HAB3 445 aa18.24■□□□□ 0.51
TUBB3-202ENST00000553656 RGPD3A6NKT7 1758 aaPredicted RBP18.24■□□□□ 0.51
TUBB3-202ENST00000553656 RGPD4Q7Z3J3 1758 aa18.24■□□□□ 0.51
TUBB3-202ENST00000553656 TMPOP42166 694 aaKnown RBP18.23■□□□□ 0.51
TUBB3-202ENST00000553656 RIPK4P57078 832 aa18.23■□□□□ 0.51
TUBB3-202ENST00000553656 EZH2Q15910 746 aaKnown RBP18.23■□□□□ 0.51
TUBB3-202ENST00000553656 NFATC2IPQ8NCF5 419 aa18.23■□□□□ 0.51
TUBB3-202ENST00000553656 ADAMTS7Q9UKP4 1686 aa18.22■□□□□ 0.51
TUBB3-202ENST00000553656 MRC1P22897 1456 aa18.22■□□□□ 0.51
TUBB3-202ENST00000553656 NEUROD2Q15784 382 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms