RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 NFX1Q12986 1120 aaKnown RBP8.83□□□□□ -1
SCFD1-209ENST00000553280 CBLBQ13191 982 aa8.83□□□□□ -1
SCFD1-209ENST00000553280 INTS6LQ5JSJ4 861 aaKnown RBP8.83□□□□□ -1
SCFD1-209ENST00000553280 TBC1D9Q6ZT07 1266 aa8.83□□□□□ -1
SCFD1-209ENST00000553280 DZIP3Q86Y13 1208 aaKnown RBP8.83□□□□□ -1
SCFD1-209ENST00000553280 LINC00528Q8N1L1 170 aa8.83□□□□□ -1
SCFD1-209ENST00000553280 MEIOBQ8N635 442 aa8.83□□□□□ -1
SCFD1-209ENST00000553280 TERTO14746 1132 aaKnown RBP8.82□□□□□ -1
SCFD1-209ENST00000553280 ATP9BO43861 1147 aa8.82□□□□□ -1
SCFD1-209ENST00000553280 UPP2O95045 317 aa8.82□□□□□ -1
SCFD1-209ENST00000553280 KCNA1Q09470 495 aa8.82□□□□□ -1
SCFD1-209ENST00000553280 LCE2AQ5TA79 106 aaPredicted RBP8.82□□□□□ -1
SCFD1-209ENST00000553280 VEGFBP49765 207 aa8.81□□□□□ -1
SCFD1-209ENST00000553280 PGPEP1Q9NXJ5 209 aa8.81□□□□□ -1
SCFD1-209ENST00000553280 NBPF20Q3BBV1 942 aa8.8□□□□□ -1
SCFD1-209ENST00000553280 CDCA8Q53HL2 280 aa8.8□□□□□ -1
SCFD1-209ENST00000553280 TMCO4Q5TGY1 634 aa8.8□□□□□ -1
SCFD1-209ENST00000553280 NFATC2IPQ8NCF5 419 aa8.8□□□□□ -1
SCFD1-209ENST00000553280 TMPRSS4Q9NRS4 437 aa8.8□□□□□ -1
SCFD1-209ENST00000553280 DHX9Q08211 1270 aaKnown RBP8.79□□□□□ -1
SCFD1-209ENST00000553280 VRTNQ9H8Y1 702 aa8.79□□□□□ -1
SCFD1-209ENST00000553280 NXF1Q9UBU9 619 aaKnown RBP8.79□□□□□ -1
SCFD1-209ENST00000553280 KANK4Q5T7N3 995 aaPredicted RBP8.78□□□□□ -1
SCFD1-209ENST00000553280 LCE2CQ5TA81 110 aa8.78□□□□□ -1
SCFD1-209ENST00000553280 PCDHB9Q9Y5E1 797 aa8.78□□□□□ -1
SCFD1-209ENST00000553280 CARNS1A5YM72 827 aa8.77□□□□□ -1.01
SCFD1-209ENST00000553280 TMEM88BA6NKF7 163 aa8.77□□□□□ -1.01
SCFD1-209ENST00000553280 MAN1A2O60476 641 aa8.77□□□□□ -1.01
SCFD1-209ENST00000553280 AGBL1Q96MI9 1066 aa8.77□□□□□ -1.01
SCFD1-209ENST00000553280 TSEN34Q9BSV6 310 aaKnown RBP8.77□□□□□ -1.01
SCFD1-209ENST00000553280 ERVH48-1M5A8F1 160 aa8.76□□□□□ -1.01
SCFD1-209ENST00000553280 Q6ZVU0 165 aa8.76□□□□□ -1.01
SCFD1-209ENST00000553280 RGS22Q8NE09 1264 aa8.76□□□□□ -1.01
SCFD1-209ENST00000553280 PIK3CDO00329 1044 aa8.75□□□□□ -1.01
SCFD1-209ENST00000553280 MFAP1P55081 439 aaKnown RBP8.75□□□□□ -1.01
SCFD1-209ENST00000553280 ELOAQ14241 798 aaKnown RBP8.75□□□□□ -1.01
SCFD1-209ENST00000553280 ZNF784Q8NCA9 323 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-209ENST00000553280 SLC16A10Q8TF71 515 aa8.75□□□□□ -1.01
SCFD1-209ENST00000553280 SOS2Q07890 1332 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-209ENST00000553280 ESPNB1AK53 854 aa8.74□□□□□ -1.01
SCFD1-209ENST00000553280 MCCD1P59942 119 aaPredicted RBP8.74□□□□□ -1.01
SCFD1-209ENST00000553280 RELBQ01201 579 aa8.74□□□□□ -1.01
SCFD1-209ENST00000553280 PLEKHM2Q8IWE5 1019 aa8.74□□□□□ -1.01
SCFD1-209ENST00000553280 ZNF592Q92610 1267 aa8.74□□□□□ -1.01
SCFD1-209ENST00000553280 DNMT3LQ9UJW3 386 aa8.74□□□□□ -1.01
SCFD1-209ENST00000553280 FIGNL2A6NMB9 653 aa8.73□□□□□ -1.01
SCFD1-209ENST00000553280 GIGYF1O75420 1035 aaPredicted RBP8.73□□□□□ -1.01
SCFD1-209ENST00000553280 SKIP12755 728 aa8.73□□□□□ -1.01
SCFD1-209ENST00000553280 CEP126Q9P2H0 1117 aa8.73□□□□□ -1.01
SCFD1-209ENST00000553280 USP17L3A6NCW0 530 aa8.72□□□□□ -1.01
SCFD1-209ENST00000553280 USP17L4A6NCW7 530 aa8.72□□□□□ -1.01
SCFD1-209ENST00000553280 TTLL8A6PVC2 850 aa8.72□□□□□ -1.01
SCFD1-209ENST00000553280 USP17L2Q6R6M4 530 aa8.72□□□□□ -1.01
SCFD1-209ENST00000553280 USP17L1Q7RTZ2 530 aa8.72□□□□□ -1.01
SCFD1-209ENST00000553280 ZNF395Q9H8N7 513 aaPredicted RBP8.72□□□□□ -1.01
SCFD1-209ENST00000553280 CYLDQ9NQC7 956 aa8.72□□□□□ -1.01
SCFD1-209ENST00000553280 USP17L5A8MUK1 530 aa8.71□□□□□ -1.02
SCFD1-209ENST00000553280 SPINT1O43278 529 aa8.71□□□□□ -1.02
SCFD1-209ENST00000553280 LILRA1O75019 489 aa8.71□□□□□ -1.02
SCFD1-209ENST00000553280 ADD1P35611 737 aaKnown RBP8.71□□□□□ -1.02
SCFD1-209ENST00000553280 PHTF2Q8N3S3 785 aa8.71□□□□□ -1.02
SCFD1-209ENST00000553280 MTMR7Q9Y216 660 aa8.71□□□□□ -1.02
SCFD1-209ENST00000553280 H3BM21 787 aa8.7□□□□□ -1.02
SCFD1-209ENST00000553280 SEPT12Q8IYM1 358 aa8.7□□□□□ -1.02
SCFD1-209ENST00000553280 INSM2Q96T92 566 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-209ENST00000553280 LZTS3O60299 673 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-209ENST00000553280 ADH1AP07327 375 aa8.69□□□□□ -1.02
SCFD1-209ENST00000553280 CTSOP43234 321 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-209ENST00000553280 SLFNL1Q499Z3 407 aa8.69□□□□□ -1.02
SCFD1-209ENST00000553280 B4GALNT3Q6L9W6 998 aa8.69□□□□□ -1.02
SCFD1-209ENST00000553280 NPAS3Q8IXF0 933 aa8.69□□□□□ -1.02
SCFD1-209ENST00000553280 IRF7Q92985 503 aa8.69□□□□□ -1.02
SCFD1-209ENST00000553280 POLMQ9NP87 494 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-209ENST00000553280 ZMIZ1Q9ULJ6 1067 aa8.69□□□□□ -1.02
SCFD1-209ENST00000553280 IVNS1ABPQ9Y6Y0 642 aa8.69□□□□□ -1.02
SCFD1-209ENST00000553280 ERBB4Q15303 1308 aa8.69□□□□□ -1.02
SCFD1-209ENST00000553280 WIPF1O43516 503 aa8.68□□□□□ -1.02
SCFD1-209ENST00000553280 GMPRP36959 345 aa8.68□□□□□ -1.02
SCFD1-209ENST00000553280 TMEM164Q5U3C3 297 aa8.68□□□□□ -1.02
SCFD1-209ENST00000553280 MKRN1Q9UHC7 482 aaKnown RBP8.68□□□□□ -1.02
SCFD1-209ENST00000553280 CHIC2Q9UKJ5 165 aa8.68□□□□□ -1.02
SCFD1-209ENST00000553280 GNEQ9Y223 722 aaKnown RBP8.68□□□□□ -1.02
SCFD1-209ENST00000553280 FAM196BA6NMK8 535 aa8.67□□□□□ -1.02
SCFD1-209ENST00000553280 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.67□□□□□ -1.02
SCFD1-209ENST00000553280 DEPDC4Q8N2C3 294 aa8.67□□□□□ -1.02
SCFD1-209ENST00000553280 STK32AQ8WU08 396 aa8.67□□□□□ -1.02
SCFD1-209ENST00000553280 NOVA2Q9UNW9 492 aaKnown RBP8.67□□□□□ -1.02
SCFD1-209ENST00000553280 PPFIA3O75145 1194 aa8.66□□□□□ -1.02
SCFD1-209ENST00000553280 RNF135Q8IUD6 432 aa8.66□□□□□ -1.02
SCFD1-209ENST00000553280 KDF1Q8NAX2 398 aaPredicted RBP8.66□□□□□ -1.02
SCFD1-209ENST00000553280 ATP5J2-PTCD1G3V325 749 aa8.65□□□□□ -1.02
SCFD1-209ENST00000553280 PTGIRP43119 386 aa8.65□□□□□ -1.02
SCFD1-209ENST00000553280 PTSQ03393 145 aa8.65□□□□□ -1.02
SCFD1-209ENST00000553280 NCOA4Q13772 614 aa8.65□□□□□ -1.02
SCFD1-209ENST00000553280 MAP7D1Q3KQU3 841 aa8.65□□□□□ -1.02
SCFD1-209ENST00000553280 LARP1Q6PKG0 1096 aaKnown RBP8.65□□□□□ -1.02
SCFD1-209ENST00000553280 SND1Q7KZF4 910 aaKnown RBP eCLIP8.65□□□□□ -1.02
SCFD1-209ENST00000553280 PLPP7Q8NBV4 271 aa8.65□□□□□ -1.02
SCFD1-209ENST00000553280 RASA1P20936 1047 aa8.64□□□□□ -1.03
SCFD1-209ENST00000553280 INSM1Q01101 510 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms