RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	CCDC82	Q8N4S0	544 aa		6.63	□□□□□ -1.35
USP44-208	ENST00000552440	INSM2	Q96T92	566 aa	Predicted RBP	6.63	□□□□□ -1.35
USP44-208	ENST00000552440	ZBBX	A8MT70	800 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	ERVH48-1	M5A8F1	160 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	HSP90B1	P14625	803 aa	Known RBP	6.62	□□□□□ -1.35
USP44-208	ENST00000552440	CTSO	P43234	321 aa	Predicted RBP	6.62	□□□□□ -1.35
USP44-208	ENST00000552440	MCM6	Q14566	821 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	FOXR1	Q6PIV2	292 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	LYSMD3	Q7Z3D4	306 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	CNTNAP3B	Q96NU0	1288 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	OCSTAMP	Q9BR26	566 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	COL25A1	Q9BXS0	654 aa	Predicted RBP	6.62	□□□□□ -1.35
USP44-208	ENST00000552440	CNTNAP3	Q9BZ76	1288 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	SOCS7	O14512	581 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	RAD21	O60216	631 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	GPC1	P35052	558 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	ZNF784	Q8NCA9	323 aa	Predicted RBP	6.62	□□□□□ -1.35
USP44-208	ENST00000552440	RNF217	Q8TC41	542 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	AGBL1	Q96MI9	1066 aa		6.62	□□□□□ -1.35
USP44-208	ENST00000552440	ESF1	Q9H501	851 aa	Known RBP	6.62	□□□□□ -1.35
USP44-208	ENST00000552440	VWA5B2	Q8N398	1253 aa		6.61	□□□□□ -1.35
USP44-208	ENST00000552440	SLURP2	P0DP57	97 aa		6.6	□□□□□ -1.35
USP44-208	ENST00000552440	RNF144A	P50876	292 aa	Predicted RBP	6.6	□□□□□ -1.35
USP44-208	ENST00000552440	TMEM151A	Q8N4L1	468 aa		6.6	□□□□□ -1.35
USP44-208	ENST00000552440	RGS22	Q8NE09	1264 aa		6.6	□□□□□ -1.35
USP44-208	ENST00000552440	CDC14C	A4D256	554 aa		6.6	□□□□□ -1.35
USP44-208	ENST00000552440	LILRA1	O75019	489 aa		6.6	□□□□□ -1.35
USP44-208	ENST00000552440	RAB15	P59190	212 aa		6.6	□□□□□ -1.35
USP44-208	ENST00000552440	GPR161	Q8N6U8	529 aa	Known RBP	6.6	□□□□□ -1.35
USP44-208	ENST00000552440	BANK1	Q8NDB2	785 aa		6.6	□□□□□ -1.35
USP44-208	ENST00000552440	ZNF395	Q9H8N7	513 aa	Predicted RBP	6.6	□□□□□ -1.35
USP44-208	ENST00000552440	HMX1	Q9NP08	348 aa	Predicted RBP	6.6	□□□□□ -1.35
USP44-208	ENST00000552440	ENAM	Q9NRM1	1142 aa		6.6	□□□□□ -1.35
USP44-208	ENST00000552440	TMPRSS4	Q9NRS4	437 aa		6.6	□□□□□ -1.35
USP44-208	ENST00000552440	ATP5J2-PTCD1	G3V325	749 aa		6.59	□□□□□ -1.35
USP44-208	ENST00000552440	SVOP	Q8N4V2	548 aa		6.59	□□□□□ -1.35
USP44-208	ENST00000552440	EPS8L1	Q8TE68	723 aa		6.59	□□□□□ -1.35
USP44-208	ENST00000552440	ADAMTS8	Q9UP79	889 aa		6.59	□□□□□ -1.35
USP44-208	ENST00000552440	PCDHB9	Q9Y5E1	797 aa		6.59	□□□□□ -1.35
USP44-208	ENST00000552440		H7C1W4	665 aa		6.58	□□□□□ -1.36
USP44-208	ENST00000552440	FBXO31	Q5XUX0	539 aa	Predicted RBP	6.58	□□□□□ -1.36
USP44-208	ENST00000552440	MARS	P56192	900 aa	Known RBP	6.57	□□□□□ -1.36
USP44-208	ENST00000552440	MAP3K10	Q02779	954 aa		6.57	□□□□□ -1.36
USP44-208	ENST00000552440	WDR44	Q5JSH3	913 aa		6.57	□□□□□ -1.36
USP44-208	ENST00000552440	SCARF2	Q96GP6	870 aa	Predicted RBP	6.57	□□□□□ -1.36
USP44-208	ENST00000552440	NLRP3	Q96P20	1036 aa		6.57	□□□□□ -1.36
USP44-208	ENST00000552440	ADD1	P35611	737 aa	Known RBP	6.57	□□□□□ -1.36
USP44-208	ENST00000552440	KRT76	Q01546	638 aa		6.57	□□□□□ -1.36
USP44-208	ENST00000552440	SRSF11	Q05519	484 aa	Known RBP	6.57	□□□□□ -1.36
USP44-208	ENST00000552440	KANK3	Q6NY19	840 aa		6.57	□□□□□ -1.36
USP44-208	ENST00000552440	CYP2U1	Q7Z449	544 aa		6.57	□□□□□ -1.36
USP44-208	ENST00000552440	PROSER2	Q86WR7	435 aa	Predicted RBP	6.57	□□□□□ -1.36
USP44-208	ENST00000552440	FNBP4	Q8N3X1	1017 aa	Predicted RBP	6.57	□□□□□ -1.36
USP44-208	ENST00000552440	TRIM34	Q9BYJ4	488 aa		6.57	□□□□□ -1.36
USP44-208	ENST00000552440	PRM3	Q9NNZ6	103 aa		6.57	□□□□□ -1.36
USP44-208	ENST00000552440	GDF11	O95390	407 aa		6.56	□□□□□ -1.36
USP44-208	ENST00000552440	NR1H3	Q13133	447 aa		6.56	□□□□□ -1.36
USP44-208	ENST00000552440	CC2D2B	Q6DHV5	1058 aa		6.56	□□□□□ -1.36
USP44-208	ENST00000552440	PUS7	Q96PZ0	661 aa	Known RBP	6.56	□□□□□ -1.36
USP44-208	ENST00000552440	TRAIP	Q9BWF2	469 aa		6.56	□□□□□ -1.36
USP44-208	ENST00000552440	CYLD	Q9NQC7	956 aa		6.56	□□□□□ -1.36
USP44-208	ENST00000552440	NSFL1C	Q9UNZ2	370 aa	Known RBP	6.56	□□□□□ -1.36
USP44-208	ENST00000552440	RASSF7	Q02833	373 aa		6.55	□□□□□ -1.36
USP44-208	ENST00000552440	FOXD4L5	Q5VV16	416 aa	Predicted RBP	6.55	□□□□□ -1.36
USP44-208	ENST00000552440	ZNF385C	Q66K41	422 aa	Predicted RBP	6.55	□□□□□ -1.36
USP44-208	ENST00000552440	TRIM22	Q8IYM9	498 aa		6.55	□□□□□ -1.36
USP44-208	ENST00000552440	POM121	Q96HA1	1249 aa		6.55	□□□□□ -1.36
USP44-208	ENST00000552440	ZNF777	Q9ULD5	760 aa	Predicted RBP	6.55	□□□□□ -1.36
USP44-208	ENST00000552440	DYRK1B	Q9Y463	629 aa		6.55	□□□□□ -1.36
USP44-208	ENST00000552440	GIGYF1	O75420	1035 aa	Predicted RBP	6.55	□□□□□ -1.36
USP44-208	ENST00000552440	ERVK-9	P63128	1117 aa		6.55	□□□□□ -1.36
USP44-208	ENST00000552440	TRERF1	Q96PN7	1200 aa		6.55	□□□□□ -1.36
USP44-208	ENST00000552440	MTMR7	Q9Y216	660 aa		6.55	□□□□□ -1.36
USP44-208	ENST00000552440	SENP3-EIF4A1	A0A087X0R7	540 aa		6.54	□□□□□ -1.36
USP44-208	ENST00000552440	MEN1	O00255	615 aa		6.54	□□□□□ -1.36
USP44-208	ENST00000552440	IGHA1	P01876	353 aa		6.54	□□□□□ -1.36
USP44-208	ENST00000552440	FOXK2	Q01167	660 aa		6.54	□□□□□ -1.36
USP44-208	ENST00000552440	SLC27A3	Q5K4L6	730 aa		6.54	□□□□□ -1.36
USP44-208	ENST00000552440	FBXO45	P0C2W1	286 aa		6.53	□□□□□ -1.36
USP44-208	ENST00000552440	RNFT1	Q5M7Z0	435 aa		6.53	□□□□□ -1.36
USP44-208	ENST00000552440	PRICKLE2	Q7Z3G6	844 aa		6.53	□□□□□ -1.36
USP44-208	ENST00000552440	KDF1	Q8NAX2	398 aa	Predicted RBP	6.53	□□□□□ -1.36
USP44-208	ENST00000552440	NDUFB9	Q9Y6M9	179 aa		6.53	□□□□□ -1.36
USP44-208	ENST00000552440		A0A1W2PRU2	124 aa		6.53	□□□□□ -1.36
USP44-208	ENST00000552440	ADAMTS2	O95450	1211 aa		6.53	□□□□□ -1.36
USP44-208	ENST00000552440	GTF2E1	P29083	439 aa	Predicted RBP	6.53	□□□□□ -1.36
USP44-208	ENST00000552440	CLN3	Q13286	438 aa		6.53	□□□□□ -1.36
USP44-208	ENST00000552440	MBIP	Q9NS73	344 aa		6.53	□□□□□ -1.36
USP44-208	ENST00000552440	LRRC4B	Q9NT99	713 aa		6.53	□□□□□ -1.36
USP44-208	ENST00000552440	ARHGEF15	O94989	841 aa		6.52	□□□□□ -1.37
USP44-208	ENST00000552440	RBM25	P49756	843 aa	Known RBP	6.52	□□□□□ -1.37
USP44-208	ENST00000552440	TMCO4	Q5TGY1	634 aa		6.52	□□□□□ -1.37
USP44-208	ENST00000552440	GJD4	Q96KN9	370 aa	Predicted RBP	6.52	□□□□□ -1.37
USP44-208	ENST00000552440	PHF20L1	A8MW92	1017 aa		6.51	□□□□□ -1.37
USP44-208	ENST00000552440	MYC	P01106	439 aa	Predicted RBP	6.51	□□□□□ -1.37
USP44-208	ENST00000552440	GNRH1	P01148	92 aa		6.51	□□□□□ -1.37
USP44-208	ENST00000552440	SERPINA10	Q9UK55	444 aa		6.51	□□□□□ -1.37
USP44-208	ENST00000552440	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	6.51	□□□□□ -1.37
USP44-208	ENST00000552440	SPATA31C2	B4DYI2	1134 aa		6.5	□□□□□ -1.37
USP44-208	ENST00000552440	RIPOR1	Q6ZS17	1223 aa		6.5	□□□□□ -1.37

Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms