RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 FCF1Q9Y324 198 aaKnown RBP10.27□□□□□ -0.77
LIMA1-210ENST00000552045 SFI1A8K8P3 1242 aa10.26□□□□□ -0.77
LIMA1-210ENST00000552045 S1PR4O95977 384 aa10.26□□□□□ -0.77
LIMA1-210ENST00000552045 KCNC4Q03721 635 aa10.26□□□□□ -0.77
LIMA1-210ENST00000552045 TAS1R3Q7RTX0 852 aa10.26□□□□□ -0.77
LIMA1-210ENST00000552045 CCDC125Q86Z20 511 aa10.26□□□□□ -0.77
LIMA1-210ENST00000552045 SEPT12Q8IYM1 358 aa10.26□□□□□ -0.77
LIMA1-210ENST00000552045 CXXC1Q9P0U4 656 aaPredicted RBP10.26□□□□□ -0.77
LIMA1-210ENST00000552045 CDV3Q9UKY7 258 aaKnown RBP10.26□□□□□ -0.77
LIMA1-210ENST00000552045 PCDHB11Q9Y5F2 797 aa10.26□□□□□ -0.77
LIMA1-210ENST00000552045 RBM47A0AV96 593 aaKnown RBP10.25□□□□□ -0.77
LIMA1-210ENST00000552045 PSME1Q06323 249 aa10.25□□□□□ -0.77
LIMA1-210ENST00000552045 TRMT44Q8IYL2 757 aaKnown RBP10.25□□□□□ -0.77
LIMA1-210ENST00000552045 PRIMPOLQ96LW4 560 aa10.25□□□□□ -0.77
LIMA1-210ENST00000552045 NKX2-3Q8TAU0 364 aa10.24□□□□□ -0.77
LIMA1-210ENST00000552045 SH3BP2P78314 561 aa10.23□□□□□ -0.77
LIMA1-210ENST00000552045 BIN2Q9UBW5 565 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-210ENST00000552045 EGFL7Q9UHF1 273 aa10.23□□□□□ -0.77
LIMA1-210ENST00000552045 UNCXA6NJT0 531 aa10.22□□□□□ -0.77
LIMA1-210ENST00000552045 MARSP56192 900 aaKnown RBP10.22□□□□□ -0.77
LIMA1-210ENST00000552045 NOM1Q5C9Z4 860 aaKnown RBP10.22□□□□□ -0.77
LIMA1-210ENST00000552045 HINFPQ9BQA5 517 aa10.21□□□□□ -0.77
LIMA1-210ENST00000552045 M0R2N6 131 aa10.2□□□□□ -0.78
LIMA1-210ENST00000552045 ABL1P00519 1130 aa10.2□□□□□ -0.78
LIMA1-210ENST00000552045 IFFO2Q5TF58 517 aa10.2□□□□□ -0.78
LIMA1-210ENST00000552045 KCTD15Q96SI1 283 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-210ENST00000552045 LGR5O75473 907 aa10.18□□□□□ -0.78
LIMA1-210ENST00000552045 MYCP01106 439 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-210ENST00000552045 WEE1P30291 646 aa10.18□□□□□ -0.78
LIMA1-210ENST00000552045 ICMTO60725 284 aa10.17□□□□□ -0.78
LIMA1-210ENST00000552045 RAB15P59190 212 aa10.17□□□□□ -0.78
LIMA1-210ENST00000552045 ZNF211Q13398 564 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-210ENST00000552045 TSEN2Q8NCE0 465 aaKnown RBP10.17□□□□□ -0.78
LIMA1-210ENST00000552045 H3BRB1 525 aa10.16□□□□□ -0.78
LIMA1-210ENST00000552045 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.16□□□□□ -0.78
LIMA1-210ENST00000552045 TUT1Q9H6E5 874 aaKnown RBP10.16□□□□□ -0.78
LIMA1-210ENST00000552045 ANO2Q9NQ90 1003 aa10.16□□□□□ -0.78
LIMA1-210ENST00000552045 PPEF1O14829 653 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-210ENST00000552045 ZBTB24O43167 697 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-210ENST00000552045 VARSP26640 1264 aaKnown RBP10.15□□□□□ -0.78
LIMA1-210ENST00000552045 SCTRP47872 440 aa10.15□□□□□ -0.78
LIMA1-210ENST00000552045 INTS6LQ5JSJ4 861 aaKnown RBP10.15□□□□□ -0.78
LIMA1-210ENST00000552045 GLYCTKQ8IVS8 523 aa10.15□□□□□ -0.78
LIMA1-210ENST00000552045 GTF3C2Q8WUA4 911 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-210ENST00000552045 BCL2L13Q9BXK5 485 aa10.15□□□□□ -0.78
LIMA1-210ENST00000552045 SEPT3Q9UH03 358 aa10.15□□□□□ -0.78
LIMA1-210ENST00000552045 MAP4K5Q9Y4K4 846 aa10.15□□□□□ -0.78
LIMA1-210ENST00000552045 ANKRD33BA6NCL7 494 aa10.14□□□□□ -0.79
LIMA1-210ENST00000552045 ERVH48-1M5A8F1 160 aa10.14□□□□□ -0.79
LIMA1-210ENST00000552045 TRIM32Q13049 653 aa10.14□□□□□ -0.79
LIMA1-210ENST00000552045 FKBP5Q13451 457 aaPredicted RBP10.14□□□□□ -0.79
LIMA1-210ENST00000552045 VASH1Q7L8A9 365 aaPredicted RBP10.14□□□□□ -0.79
LIMA1-210ENST00000552045 MKNK1Q9BUB5 465 aa10.14□□□□□ -0.79
LIMA1-210ENST00000552045 ZNF358Q9NW07 568 aa10.14□□□□□ -0.79
LIMA1-210ENST00000552045 C21orf2O43822 256 aa10.13□□□□□ -0.79
LIMA1-210ENST00000552045 ZNF16P17020 682 aaPredicted RBP10.13□□□□□ -0.79
LIMA1-210ENST00000552045 NPAS4Q8IUM7 802 aa10.13□□□□□ -0.79
LIMA1-210ENST00000552045 PLA2G2EQ9NZK7 142 aa10.13□□□□□ -0.79
LIMA1-210ENST00000552045 DNMT3AQ9Y6K1 912 aaPredicted RBP10.13□□□□□ -0.79
LIMA1-210ENST00000552045 TMEM229AB2RXF0 380 aa10.12□□□□□ -0.79
LIMA1-210ENST00000552045 PTCD1O75127 700 aaKnown RBP10.12□□□□□ -0.79
LIMA1-210ENST00000552045 GGCXP38435 758 aa10.12□□□□□ -0.79
LIMA1-210ENST00000552045 WNT7BP56706 349 aa10.12□□□□□ -0.79
LIMA1-210ENST00000552045 ERVK-9P63128 1117 aa10.12□□□□□ -0.79
LIMA1-210ENST00000552045 SKOR1P84550 965 aa10.12□□□□□ -0.79
LIMA1-210ENST00000552045 SF3B2Q13435 895 aaKnown RBP10.12□□□□□ -0.79
LIMA1-210ENST00000552045 ECM1Q16610 540 aa10.12□□□□□ -0.79
LIMA1-210ENST00000552045 CAPN12Q6ZSI9 719 aa10.12□□□□□ -0.79
LIMA1-210ENST00000552045 PURBQ96QR8 312 aaKnown RBP10.12□□□□□ -0.79
LIMA1-210ENST00000552045 FKBP4Q02790 459 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIMA1-210ENST00000552045 CC2D2BQ6DHV5 1058 aa10.11□□□□□ -0.79
LIMA1-210ENST00000552045 COL26A1Q96A83 441 aa10.11□□□□□ -0.79
LIMA1-210ENST00000552045 MRRFQ96E11 262 aaKnown RBP10.11□□□□□ -0.79
LIMA1-210ENST00000552045 ESF1Q9H501 851 aaKnown RBP10.11□□□□□ -0.79
LIMA1-210ENST00000552045 KIAA1522Q9P206 1035 aaPredicted RBP10.11□□□□□ -0.79
LIMA1-210ENST00000552045 RNF223E7ERA6 249 aa10.1□□□□□ -0.79
LIMA1-210ENST00000552045 IGFBP4P22692 258 aa10.1□□□□□ -0.79
LIMA1-210ENST00000552045 GIPC2Q8TF65 315 aa10.1□□□□□ -0.79
LIMA1-210ENST00000552045 MAPK1P28482 360 aa10.09□□□□□ -0.79
LIMA1-210ENST00000552045 PLA2G2CQ5R387 149 aa10.09□□□□□ -0.79
LIMA1-210ENST00000552045 PPP1R18Q6NYC8 613 aa10.09□□□□□ -0.79
LIMA1-210ENST00000552045 ANKLE1Q8NAG6 615 aa10.09□□□□□ -0.79
LIMA1-210ENST00000552045 OSBPL3Q9H4L5 887 aa10.09□□□□□ -0.79
LIMA1-210ENST00000552045 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.09□□□□□ -0.79
LIMA1-210ENST00000552045 IGSF5Q9NSI5 407 aa10.09□□□□□ -0.79
LIMA1-210ENST00000552045 WASLO00401 505 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-210ENST00000552045 BACH1O14867 736 aa10.08□□□□□ -0.8
LIMA1-210ENST00000552045 FOXO3O43524 673 aa10.08□□□□□ -0.8
LIMA1-210ENST00000552045 SCNN1DP51172 638 aa10.08□□□□□ -0.8
LIMA1-210ENST00000552045 ARHGAP4P98171 946 aa10.08□□□□□ -0.8
LIMA1-210ENST00000552045 MTMR3Q13615 1198 aa10.08□□□□□ -0.8
LIMA1-210ENST00000552045 GAS2L2Q8NHY3 880 aa10.08□□□□□ -0.8
LIMA1-210ENST00000552045 DCTN4Q9UJW0 460 aa10.08□□□□□ -0.8
LIMA1-210ENST00000552045 IGSF3O75054 1194 aa10.07□□□□□ -0.8
LIMA1-210ENST00000552045 GDF10P55107 478 aa10.07□□□□□ -0.8
LIMA1-210ENST00000552045 TRIM52Q96A61 297 aa10.07□□□□□ -0.8
LIMA1-210ENST00000552045 ASB16Q96NS5 453 aa10.07□□□□□ -0.8
LIMA1-210ENST00000552045 CDK15Q96Q40 435 aa10.07□□□□□ -0.8
LIMA1-210ENST00000552045 STAU1O95793 577 aaKnown RBP10.06□□□□□ -0.8
LIMA1-210ENST00000552045 NAA30Q147X3 362 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms