RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TRMT44Q8IYL2 757 aaKnown RBP6.52□□□□□ -1.37
LIMA1-208ENST00000551691 ARHGAP9Q9BRR9 750 aa6.52□□□□□ -1.37
LIMA1-208ENST00000551691 MAP4K5Q9Y4K4 846 aa6.52□□□□□ -1.37
LIMA1-208ENST00000551691 EMILIN1Q9Y6C2 1016 aa6.52□□□□□ -1.37
LIMA1-208ENST00000551691 MAGI1Q96QZ7 1491 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-208ENST00000551691 COL17A1Q9UMD9 1497 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-208ENST00000551691 CEP170Q5SW79 1584 aa6.52□□□□□ -1.37
LIMA1-208ENST00000551691 VSIG8P0DPA2 414 aa6.51□□□□□ -1.37
LIMA1-208ENST00000551691 UBTFP17480 764 aaKnown RBP6.51□□□□□ -1.37
LIMA1-208ENST00000551691 FLIIQ13045 1269 aa6.51□□□□□ -1.37
LIMA1-208ENST00000551691 GPR161Q8N6U8 529 aaKnown RBP6.51□□□□□ -1.37
LIMA1-208ENST00000551691 EPS8L1Q8TE68 723 aa6.51□□□□□ -1.37
LIMA1-208ENST00000551691 TSEN34Q9BSV6 310 aaKnown RBP6.51□□□□□ -1.37
LIMA1-208ENST00000551691 CCDC88BA6NC98 1476 aa6.51□□□□□ -1.37
LIMA1-208ENST00000551691 GRIN2BQ13224 1484 aa6.51□□□□□ -1.37
LIMA1-208ENST00000551691 DIP2BQ9P265 1576 aa6.5□□□□□ -1.37
LIMA1-208ENST00000551691 TTLL8A6PVC2 850 aa6.5□□□□□ -1.37
LIMA1-208ENST00000551691 AP1G2O75843 785 aa6.5□□□□□ -1.37
LIMA1-208ENST00000551691 RELBQ01201 579 aa6.5□□□□□ -1.37
LIMA1-208ENST00000551691 KRT76Q01546 638 aa6.5□□□□□ -1.37
LIMA1-208ENST00000551691 PTSQ03393 145 aa6.5□□□□□ -1.37
LIMA1-208ENST00000551691 SLC10A4Q96EP9 437 aa6.5□□□□□ -1.37
LIMA1-208ENST00000551691 KCTD15Q96SI1 283 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-208ENST00000551691 FAM117AQ9C073 453 aa6.5□□□□□ -1.37
LIMA1-208ENST00000551691 FKBPLQ9UIM3 349 aa6.5□□□□□ -1.37
LIMA1-208ENST00000551691 ZBTB33Q86T24 672 aa6.49□□□□□ -1.37
LIMA1-208ENST00000551691 CNTNAP3BQ96NU0 1288 aa6.49□□□□□ -1.37
LIMA1-208ENST00000551691 OCSTAMPQ9BR26 566 aa6.49□□□□□ -1.37
LIMA1-208ENST00000551691 CNTNAP3Q9BZ76 1288 aa6.49□□□□□ -1.37
LIMA1-208ENST00000551691 TMPRSS4Q9NRS4 437 aa6.49□□□□□ -1.37
LIMA1-208ENST00000551691 CTSOP43234 321 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-208ENST00000551691 INTS6LQ5JSJ4 861 aaKnown RBP6.48□□□□□ -1.37
LIMA1-208ENST00000551691 PDXDC2PQ6P474 469 aa6.48□□□□□ -1.37
LIMA1-208ENST00000551691 ZNF395Q9H8N7 513 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-208ENST00000551691 HMX1Q9NP08 348 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-208ENST00000551691 PGPEP1Q9NXJ5 209 aa6.48□□□□□ -1.37
LIMA1-208ENST00000551691 PRG4Q92954 1404 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-208ENST00000551691 TTBK1Q5TCY1 1321 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-208ENST00000551691 PRDM2Q13029 1718 aa6.47□□□□□ -1.37
LIMA1-208ENST00000551691 HSPA2P54652 639 aa6.47□□□□□ -1.37
LIMA1-208ENST00000551691 SKIV2LQ15477 1246 aaKnown RBP6.47□□□□□ -1.37
LIMA1-208ENST00000551691 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.47□□□□□ -1.37
LIMA1-208ENST00000551691 ADAM32Q8TC27 787 aa6.47□□□□□ -1.37
LIMA1-208ENST00000551691 GPKOWQ92917 476 aaPredicted RBP eCLIP6.47□□□□□ -1.37
LIMA1-208ENST00000551691 INSM2Q96T92 566 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-208ENST00000551691 FGD5Q6ZNL6 1462 aa6.47□□□□□ -1.37
LIMA1-208ENST00000551691 TOP2AP11388 1531 aaKnown RBP6.46□□□□□ -1.37
LIMA1-208ENST00000551691 APBB1O00213 710 aa6.46□□□□□ -1.38
LIMA1-208ENST00000551691 SH3D19Q5HYK7 790 aa6.46□□□□□ -1.38
LIMA1-208ENST00000551691 Q6ZVU0 165 aa6.46□□□□□ -1.38
LIMA1-208ENST00000551691 CCDC155Q8N6L0 562 aa6.46□□□□□ -1.38
LIMA1-208ENST00000551691 PCMTD1Q96MG8 357 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-208ENST00000551691 POLMQ9NP87 494 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-208ENST00000551691 CDC14CA4D256 554 aa6.45□□□□□ -1.38
LIMA1-208ENST00000551691 SPINT1O43278 529 aa6.45□□□□□ -1.38
LIMA1-208ENST00000551691 RNFT1Q5M7Z0 435 aa6.45□□□□□ -1.38
LIMA1-208ENST00000551691 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.45□□□□□ -1.38
LIMA1-208ENST00000551691 COL25A1Q9BXS0 654 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-208ENST00000551691 ARID3CA6NKF2 412 aa6.44□□□□□ -1.38
LIMA1-208ENST00000551691 VWA5B2Q8N398 1253 aa6.44□□□□□ -1.38
LIMA1-208ENST00000551691 GRIN2AQ12879 1464 aa6.43□□□□□ -1.38
LIMA1-208ENST00000551691 USP17L8P0C7I0 530 aa6.43□□□□□ -1.38
LIMA1-208ENST00000551691 PTK2Q05397 1052 aa6.43□□□□□ -1.38
LIMA1-208ENST00000551691 ZNF784Q8NCA9 323 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-208ENST00000551691 MAPKBP1O60336 1514 aa6.43□□□□□ -1.38
LIMA1-208ENST00000551691 NUP160Q12769 1436 aa6.42□□□□□ -1.38
LIMA1-208ENST00000551691 ZBTB7CA1YPR0 619 aa6.42□□□□□ -1.38
LIMA1-208ENST00000551691 PDIA4P13667 645 aaKnown RBP6.42□□□□□ -1.38
LIMA1-208ENST00000551691 ADD1P35611 737 aaKnown RBP6.42□□□□□ -1.38
LIMA1-208ENST00000551691 DHX9Q08211 1270 aaKnown RBP6.42□□□□□ -1.38
LIMA1-208ENST00000551691 PPP2R2DQ66LE6 453 aa6.42□□□□□ -1.38
LIMA1-208ENST00000551691 KCTD17Q8N5Z5 321 aa6.42□□□□□ -1.38
LIMA1-208ENST00000551691 WHAMMQ8TF30 809 aa6.42□□□□□ -1.38
LIMA1-208ENST00000551691 ADCY10Q96PN6 1610 aa6.42□□□□□ -1.38
LIMA1-208ENST00000551691 SHROOM2Q13796 1616 aa6.41□□□□□ -1.38
LIMA1-208ENST00000551691 SLC35F4A4IF30 521 aa6.41□□□□□ -1.38
LIMA1-208ENST00000551691 ERVH48-1M5A8F1 160 aa6.41□□□□□ -1.38
LIMA1-208ENST00000551691 DZIP3Q86Y13 1208 aaKnown RBP6.41□□□□□ -1.38
LIMA1-208ENST00000551691 CYLDQ9NQC7 956 aa6.41□□□□□ -1.38
LIMA1-208ENST00000551691 SPATA31D1Q6ZQQ2 1576 aa6.4□□□□□ -1.38
LIMA1-208ENST00000551691 PPRC1Q5VV67 1664 aaKnown RBP6.4□□□□□ -1.38
LIMA1-208ENST00000551691 PBRM1Q86U86 1689 aa6.4□□□□□ -1.38
LIMA1-208ENST00000551691 ITGA6P23229 1130 aa6.4□□□□□ -1.38
LIMA1-208ENST00000551691 GSK3AP49840 483 aa6.4□□□□□ -1.38
LIMA1-208ENST00000551691 SVOPQ8N4V2 548 aa6.4□□□□□ -1.38
LIMA1-208ENST00000551691 RNF217Q8TC41 542 aa6.4□□□□□ -1.38
LIMA1-208ENST00000551691 CDV3Q9UKY7 258 aaKnown RBP6.4□□□□□ -1.38
LIMA1-208ENST00000551691 SENP3-EIF4A1A0A087X0R7 540 aa6.39□□□□□ -1.39
LIMA1-208ENST00000551691 RAD21O60216 631 aa6.39□□□□□ -1.39
LIMA1-208ENST00000551691 LILRA1O75019 489 aa6.39□□□□□ -1.39
LIMA1-208ENST00000551691 RHOQP17081 205 aa6.39□□□□□ -1.39
LIMA1-208ENST00000551691 RFC5P40937 340 aa6.39□□□□□ -1.39
LIMA1-208ENST00000551691 TRIM26Q12899 539 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-208ENST00000551691 FOXD4L5Q5VV16 416 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-208ENST00000551691 ZNF385CQ66K41 422 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-208ENST00000551691 KDF1Q8NAX2 398 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-208ENST00000551691 GOPCQ9HD26 462 aa6.39□□□□□ -1.39
LIMA1-208ENST00000551691 CUEDC1Q9NWM3 386 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-208ENST00000551691 ADAMTS8Q9UP79 889 aa6.39□□□□□ -1.39
LIMA1-208ENST00000551691 ZC3H4Q9UPT8 1303 aaKnown RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms