RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 PNMA1Q8ND90 353 aa4.72□□□□□ -1.65
LIMA1-207ENST00000551486 ACDQ96AP0 544 aa4.72□□□□□ -1.65
LIMA1-207ENST00000551486 ZNF837Q96EG3 531 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-207ENST00000551486 CUEDC1Q9NWM3 386 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-207ENST00000551486 ZC3H4Q9UPT8 1303 aaKnown RBP4.72□□□□□ -1.65
LIMA1-207ENST00000551486 GPR25O00155 361 aa4.71□□□□□ -1.66
LIMA1-207ENST00000551486 MAP2K3P46734 347 aa4.71□□□□□ -1.66
LIMA1-207ENST00000551486 RNF144AP50876 292 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-207ENST00000551486 HAP1P54257 671 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-207ENST00000551486 FOXD4L5Q5VV16 416 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-207ENST00000551486 RRAGCQ9HB90 399 aa4.71□□□□□ -1.66
LIMA1-207ENST00000551486 FKBPLQ9UIM3 349 aa4.71□□□□□ -1.66
LIMA1-207ENST00000551486 OIP5O43482 229 aa4.7□□□□□ -1.66
LIMA1-207ENST00000551486 RHOQP17081 205 aa4.7□□□□□ -1.66
LIMA1-207ENST00000551486 RAB15P59190 212 aa4.7□□□□□ -1.66
LIMA1-207ENST00000551486 QPCTQ16769 361 aa4.7□□□□□ -1.66
LIMA1-207ENST00000551486 ZNF784Q8NCA9 323 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-207ENST00000551486 GTPBP3Q969Y2 492 aaKnown RBP4.7□□□□□ -1.66
LIMA1-207ENST00000551486 GAS2L1Q99501 681 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-207ENST00000551486 TMPRSS4Q9NRS4 437 aa4.7□□□□□ -1.66
LIMA1-207ENST00000551486 DYRK1BQ9Y463 629 aa4.7□□□□□ -1.66
LIMA1-207ENST00000551486 GPSM3Q9Y4H4 160 aa4.7□□□□□ -1.66
LIMA1-207ENST00000551486 KRBA1A5PL33 1030 aa4.69□□□□□ -1.66
LIMA1-207ENST00000551486 GPC1P35052 558 aa4.69□□□□□ -1.66
LIMA1-207ENST00000551486 DBN1Q16643 649 aa4.69□□□□□ -1.66
LIMA1-207ENST00000551486 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.69□□□□□ -1.66
LIMA1-207ENST00000551486 DZIP3Q86Y13 1208 aaKnown RBP4.69□□□□□ -1.66
LIMA1-207ENST00000551486 PARP9Q8IXQ6 854 aa4.69□□□□□ -1.66
LIMA1-207ENST00000551486 OXCT2Q9BYC2 517 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-207ENST00000551486 LIMD1Q9UGP4 676 aa4.69□□□□□ -1.66
LIMA1-207ENST00000551486 ZMYND10O75800 440 aa4.68□□□□□ -1.66
LIMA1-207ENST00000551486 RTL5Q5HYW3 569 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-207ENST00000551486 MYSM1Q5VVJ2 828 aa4.68□□□□□ -1.66
LIMA1-207ENST00000551486 RSPH6AQ9H0K4 717 aa4.68□□□□□ -1.66
LIMA1-207ENST00000551486 PHF24Q9UPV7 400 aa4.68□□□□□ -1.66
LIMA1-207ENST00000551486 ATP5J2-PTCD1G3V325 749 aa4.67□□□□□ -1.66
LIMA1-207ENST00000551486 ERVH48-1M5A8F1 160 aa4.67□□□□□ -1.66
LIMA1-207ENST00000551486 MEN1O00255 615 aa4.67□□□□□ -1.66
LIMA1-207ENST00000551486 AMPD1P23109 780 aa4.67□□□□□ -1.66
LIMA1-207ENST00000551486 ADD1P35611 737 aaKnown RBP4.67□□□□□ -1.66
LIMA1-207ENST00000551486 GRIN2CQ14957 1233 aa4.67□□□□□ -1.66
LIMA1-207ENST00000551486 SLC27A3Q5K4L6 730 aa4.67□□□□□ -1.66
LIMA1-207ENST00000551486 ADAM32Q8TC27 787 aa4.67□□□□□ -1.66
LIMA1-207ENST00000551486 NLRP3Q96P20 1036 aa4.67□□□□□ -1.66
LIMA1-207ENST00000551486 GDF2Q9UK05 429 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-207ENST00000551486 LILRA1O75019 489 aa4.66□□□□□ -1.66
LIMA1-207ENST00000551486 CLK2P49760 499 aaKnown RBP4.66□□□□□ -1.66
LIMA1-207ENST00000551486 SNRPNP63162 240 aaKnown RBP4.66□□□□□ -1.66
LIMA1-207ENST00000551486 CTDSPL2Q05D32 466 aa4.66□□□□□ -1.66
LIMA1-207ENST00000551486 PPP2R2DQ66LE6 453 aa4.66□□□□□ -1.66
LIMA1-207ENST00000551486 SEPT12Q8IYM1 358 aa4.66□□□□□ -1.66
LIMA1-207ENST00000551486 CFHR5Q9BXR6 569 aa4.66□□□□□ -1.66
LIMA1-207ENST00000551486 NUCKS1Q9H1E3 243 aaKnown RBP4.66□□□□□ -1.66
LIMA1-207ENST00000551486 EDARADDQ8WWZ3 215 aa4.65□□□□□ -1.67
LIMA1-207ENST00000551486 CYLDQ9NQC7 956 aa4.65□□□□□ -1.67
LIMA1-207ENST00000551486 NOP53Q9NZM5 478 aaKnown RBP4.65□□□□□ -1.67
LIMA1-207ENST00000551486 GNB5O14775 395 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 TRIM66O15016 1216 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 F11P03951 625 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 POU4F2Q12837 409 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 NR6A1Q15406 480 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 WDR44Q5JSH3 913 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 ZMYM1Q5SVZ6 1142 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 CCDC125Q86Z20 511 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 KRTAP19-1Q8IUB9 90 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 GOLGA6L1Q8N7Z2 621 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 KDF1Q8NAX2 398 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-207ENST00000551486 AK7Q96M32 723 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 SEMA6BQ9H3T3 888 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 ESF1Q9H501 851 aaKnown RBP4.64□□□□□ -1.67
LIMA1-207ENST00000551486 TIMMDC1Q9NPL8 285 aa4.64□□□□□ -1.67
LIMA1-207ENST00000551486 SCO2A0A1W2PP80 73 aa4.63□□□□□ -1.67
LIMA1-207ENST00000551486 C1QTNF9BB2RNN3 333 aa4.63□□□□□ -1.67
LIMA1-207ENST00000551486 COL8A1P27658 744 aa4.63□□□□□ -1.67
LIMA1-207ENST00000551486 KLRG1Q96E93 195 aa4.63□□□□□ -1.67
LIMA1-207ENST00000551486 ATP1B4Q9UN42 357 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-207ENST00000551486 A0A1W2PRU2 124 aa4.62□□□□□ -1.67
LIMA1-207ENST00000551486 ESPNB1AK53 854 aa4.62□□□□□ -1.67
LIMA1-207ENST00000551486 SHISA8B8ZZ34 492 aa4.62□□□□□ -1.67
LIMA1-207ENST00000551486 NBPF10Q6P3W6 841 aaKnown RBP4.62□□□□□ -1.67
LIMA1-207ENST00000551486 TAS1R3Q7RTX0 852 aa4.62□□□□□ -1.67
LIMA1-207ENST00000551486 VSIG10Q8N0Z9 540 aa4.62□□□□□ -1.67
LIMA1-207ENST00000551486 NBPF15Q8N660 670 aa4.62□□□□□ -1.67
LIMA1-207ENST00000551486 ZC3H15Q8WU90 426 aaKnown RBP4.62□□□□□ -1.67
LIMA1-207ENST00000551486 LRRN4Q8WUT4 740 aa4.62□□□□□ -1.67
LIMA1-207ENST00000551486 POLR3EQ9NVU0 708 aa4.62□□□□□ -1.67
LIMA1-207ENST00000551486 CSB-PGBD3P0DP91 1061 aa4.61□□□□□ -1.67
LIMA1-207ENST00000551486 BMP4P12644 408 aa4.61□□□□□ -1.67
LIMA1-207ENST00000551486 GTF2E1P29083 439 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-207ENST00000551486 LCE1DQ5T752 114 aa4.61□□□□□ -1.67
LIMA1-207ENST00000551486 PGBD3Q8N328 593 aa4.61□□□□□ -1.67
LIMA1-207ENST00000551486 SPATA31C2B4DYI2 1134 aa4.6□□□□□ -1.67
LIMA1-207ENST00000551486 WASLO00401 505 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-207ENST00000551486 CC2D2BQ6DHV5 1058 aa4.6□□□□□ -1.67
LIMA1-207ENST00000551486 LINC00114Q6XXX2 140 aa4.6□□□□□ -1.67
LIMA1-207ENST00000551486 CYP2U1Q7Z449 544 aa4.6□□□□□ -1.67
LIMA1-207ENST00000551486 CD163Q86VB7 1156 aa4.6□□□□□ -1.67
LIMA1-207ENST00000551486 OCSTAMPQ9BR26 566 aa4.6□□□□□ -1.67
LIMA1-207ENST00000551486 GRIP2Q9C0E4 1043 aa4.6□□□□□ -1.67
LIMA1-207ENST00000551486 GATA4P43694 442 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms