RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, human

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPAS3-208	ENST00000550662	STK32A	Q8WU08	396 aa		11.32	□□□□□ -0.6
NPAS3-208	ENST00000550662	CARNS1	A5YM72	827 aa		11.31	□□□□□ -0.6
NPAS3-208	ENST00000550662	POTEC	B2RU33	542 aa		11.31	□□□□□ -0.6
NPAS3-208	ENST00000550662	CD2BP2	O95400	341 aa	Known RBP	11.31	□□□□□ -0.6
NPAS3-208	ENST00000550662	LARGE2	Q8N3Y3	721 aa		11.31	□□□□□ -0.6
NPAS3-208	ENST00000550662	GZF1	Q9H116	711 aa	Predicted RBP	11.31	□□□□□ -0.6
NPAS3-208	ENST00000550662	DNAAF2	Q9NVR5	837 aa	Known RBP	11.31	□□□□□ -0.6
NPAS3-208	ENST00000550662	TSGA10IP	Q3SY00	556 aa		11.3	□□□□□ -0.6
NPAS3-208	ENST00000550662	OXLD1	Q5BKU9	147 aa		11.3	□□□□□ -0.6
NPAS3-208	ENST00000550662	ZNF775	Q96BV0	537 aa	Predicted RBP	11.3	□□□□□ -0.6
NPAS3-208	ENST00000550662	MAP4K5	Q9Y4K4	846 aa		11.3	□□□□□ -0.6
NPAS3-208	ENST00000550662	USP4	Q13107	963 aa		11.29	□□□□□ -0.6
NPAS3-208	ENST00000550662	TMCO4	Q5TGY1	634 aa		11.29	□□□□□ -0.6
NPAS3-208	ENST00000550662	TRIM52	Q96A61	297 aa		11.29	□□□□□ -0.6
NPAS3-208	ENST00000550662	TOR4A	Q9NXH8	423 aa		11.28	□□□□□ -0.6
NPAS3-208	ENST00000550662	RBM19	Q9Y4C8	960 aa	Known RBP	11.28	□□□□□ -0.6
NPAS3-208	ENST00000550662	GTF2I	P78347	998 aa		11.27	□□□□□ -0.61
NPAS3-208	ENST00000550662	CLDN10	P78369	228 aa		11.27	□□□□□ -0.61
NPAS3-208	ENST00000550662	SWI5	Q1ZZU3	235 aa		11.27	□□□□□ -0.61
NPAS3-208	ENST00000550662	SIX5	Q8N196	739 aa		11.27	□□□□□ -0.61
NPAS3-208	ENST00000550662	CLP1	Q92989	425 aa	Known RBP	11.27	□□□□□ -0.61
NPAS3-208	ENST00000550662	KCTD15	Q96SI1	283 aa	Predicted RBP	11.27	□□□□□ -0.61
NPAS3-208	ENST00000550662	AAAS	Q9NRG9	546 aa		11.27	□□□□□ -0.61
NPAS3-208	ENST00000550662	PCDHB11	Q9Y5F2	797 aa		11.27	□□□□□ -0.61
NPAS3-208	ENST00000550662	ST8SIA5	O15466	376 aa		11.26	□□□□□ -0.61
NPAS3-208	ENST00000550662	DPYD	Q12882	1025 aa		11.26	□□□□□ -0.61
NPAS3-208	ENST00000550662	SKOR1	P84550	965 aa		11.25	□□□□□ -0.61
NPAS3-208	ENST00000550662	ZNF594	Q96JF6	807 aa	Predicted RBP	11.25	□□□□□ -0.61
NPAS3-208	ENST00000550662	GNE	Q9Y223	722 aa	Known RBP	11.25	□□□□□ -0.61
NPAS3-208	ENST00000550662	FAM69C	Q0P6D2	419 aa		11.24	□□□□□ -0.61
NPAS3-208	ENST00000550662	VASH1	Q7L8A9	365 aa	Predicted RBP	11.24	□□□□□ -0.61
NPAS3-208	ENST00000550662	ZBTB7B	O15156	539 aa	Predicted RBP	11.23	□□□□□ -0.61
NPAS3-208	ENST00000550662	MYC	P01106	439 aa	Predicted RBP	11.23	□□□□□ -0.61
NPAS3-208	ENST00000550662	AVP	P01185	164 aa		11.23	□□□□□ -0.61
NPAS3-208	ENST00000550662	EHBP1	Q8NDI1	1231 aa		11.23	□□□□□ -0.61
NPAS3-208	ENST00000550662	IVNS1ABP	Q9Y6Y0	642 aa		11.23	□□□□□ -0.61
NPAS3-208	ENST00000550662	SEC13	P55735	322 aa		11.22	□□□□□ -0.61
NPAS3-208	ENST00000550662	MPND	Q8N594	471 aa		11.22	□□□□□ -0.61
NPAS3-208	ENST00000550662	CCER1	Q8TC90	406 aa	Predicted RBP	11.22	□□□□□ -0.61
NPAS3-208	ENST00000550662	CDK15	Q96Q40	435 aa		11.22	□□□□□ -0.61
NPAS3-208	ENST00000550662	PCDHGA11	Q9Y5H2	935 aa		11.22	□□□□□ -0.61
NPAS3-208	ENST00000550662	SSFA2	P28290	1259 aa		11.21	□□□□□ -0.61
NPAS3-208	ENST00000550662	PSME1	Q06323	249 aa		11.21	□□□□□ -0.61
NPAS3-208	ENST00000550662	INTS6L	Q5JSJ4	861 aa	Known RBP	11.21	□□□□□ -0.61
NPAS3-208	ENST00000550662	CCDC102B	Q68D86	513 aa		11.21	□□□□□ -0.61
NPAS3-208	ENST00000550662	CYP4X1	Q8N118	509 aa		11.21	□□□□□ -0.61
NPAS3-208	ENST00000550662	CRIPAK	Q8N1N5	446 aa		11.21	□□□□□ -0.61
NPAS3-208	ENST00000550662	DKK1	O94907	266 aa		11.2	□□□□□ -0.62
NPAS3-208	ENST00000550662	RC3H1	Q5TC82	1133 aa	Known RBP	11.2	□□□□□ -0.62
NPAS3-208	ENST00000550662	ESF1	Q9H501	851 aa	Known RBP	11.2	□□□□□ -0.62
NPAS3-208	ENST00000550662	DACH1	Q9UI36	760 aa		11.2	□□□□□ -0.62
NPAS3-208	ENST00000550662	KIAA1024	Q9UPX6	916 aa		11.2	□□□□□ -0.62
NPAS3-208	ENST00000550662	ARID4A	P29374	1257 aa	Predicted RBP	11.19	□□□□□ -0.62
NPAS3-208	ENST00000550662	DHX9	Q08211	1270 aa	Known RBP	11.19	□□□□□ -0.62
NPAS3-208	ENST00000550662	TPCN2	Q8NHX9	752 aa		11.19	□□□□□ -0.62
NPAS3-208	ENST00000550662	WNT7A	O00755	349 aa		11.18	□□□□□ -0.62
NPAS3-208	ENST00000550662	ATP2B4	P23634	1241 aa		11.18	□□□□□ -0.62
NPAS3-208	ENST00000550662	MFAP1	P55081	439 aa	Known RBP	11.18	□□□□□ -0.62
NPAS3-208	ENST00000550662	RAB15	P59190	212 aa		11.18	□□□□□ -0.62
NPAS3-208	ENST00000550662	PHLDB3	Q6NSJ2	640 aa		11.18	□□□□□ -0.62
NPAS3-208	ENST00000550662	TXNDC2	Q86VQ3	553 aa		11.18	□□□□□ -0.62
NPAS3-208	ENST00000550662	ERVH48-1	M5A8F1	160 aa		11.17	□□□□□ -0.62
NPAS3-208	ENST00000550662	ARID5B	Q14865	1188 aa		11.17	□□□□□ -0.62
NPAS3-208	ENST00000550662	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
NPAS3-208	ENST00000550662	C1orf216	Q8TAB5	229 aa		11.17	□□□□□ -0.62
NPAS3-208	ENST00000550662		M0R2N6	131 aa		11.16	□□□□□ -0.62
NPAS3-208	ENST00000550662	ERVK-9	P63128	1117 aa		11.16	□□□□□ -0.62
NPAS3-208	ENST00000550662	SLAIN2	Q9P270	581 aa		11.16	□□□□□ -0.62
NPAS3-208	ENST00000550662	CC2D2B	Q6DHV5	1058 aa		11.15	□□□□□ -0.62
NPAS3-208	ENST00000550662	MTMR7	Q9Y216	660 aa		11.15	□□□□□ -0.62
NPAS3-208	ENST00000550662	TTC24	A2A3L6	582 aa	Predicted RBP	11.14	□□□□□ -0.63
NPAS3-208	ENST00000550662	SMCP	P49901	116 aa	Predicted RBP	11.14	□□□□□ -0.63
NPAS3-208	ENST00000550662	NR5A1	Q13285	461 aa		11.14	□□□□□ -0.63
NPAS3-208	ENST00000550662	SFI1	A8K8P3	1242 aa		11.13	□□□□□ -0.63
NPAS3-208	ENST00000550662	AXIN1	O15169	862 aa		11.13	□□□□□ -0.63
NPAS3-208	ENST00000550662	SIAH2	O43255	324 aa		11.13	□□□□□ -0.63
NPAS3-208	ENST00000550662	SMPD1	P17405	629 aa		11.13	□□□□□ -0.63
NPAS3-208	ENST00000550662	FSHR	P23945	695 aa		11.13	□□□□□ -0.63
NPAS3-208	ENST00000550662	GRM5	P41594	1212 aa		11.13	□□□□□ -0.63
NPAS3-208	ENST00000550662	CTC1	Q2NKJ3	1217 aa		11.13	□□□□□ -0.63
NPAS3-208	ENST00000550662	MRGPRX2	Q96LB1	330 aa		11.13	□□□□□ -0.63
NPAS3-208	ENST00000550662	ADH1C	P00326	375 aa		11.12	□□□□□ -0.63
NPAS3-208	ENST00000550662	CCDC27	Q2M243	656 aa		11.12	□□□□□ -0.63
NPAS3-208	ENST00000550662	SNIP1	Q8TAD8	396 aa	Known RBP	11.12	□□□□□ -0.63
NPAS3-208	ENST00000550662	SCTR	P47872	440 aa		11.11	□□□□□ -0.63
NPAS3-208	ENST00000550662	NPM2	Q86SE8	214 aa	Known RBP	11.11	□□□□□ -0.63
NPAS3-208	ENST00000550662	CCDC116	Q8IYX3	515 aa		11.11	□□□□□ -0.63
NPAS3-208	ENST00000550662	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.11	□□□□□ -0.63
NPAS3-208	ENST00000550662	RANGAP1	P46060	587 aa	Predicted RBP	11.1	□□□□□ -0.63
NPAS3-208	ENST00000550662	RGS22	Q8NE09	1264 aa		11.1	□□□□□ -0.63
NPAS3-208	ENST00000550662	HINFP	Q9BQA5	517 aa		11.1	□□□□□ -0.63
NPAS3-208	ENST00000550662	GMPR2	Q9P2T1	348 aa	Known RBP	11.1	□□□□□ -0.63
NPAS3-208	ENST00000550662	TLL2	Q9Y6L7	1015 aa		11.1	□□□□□ -0.63
NPAS3-208	ENST00000550662		J3QL48	77 aa		11.09	□□□□□ -0.63
NPAS3-208	ENST00000550662	WASL	O00401	505 aa	Predicted RBP	11.09	□□□□□ -0.63
NPAS3-208	ENST00000550662	BACH1	O14867	736 aa		11.09	□□□□□ -0.63
NPAS3-208	ENST00000550662	PRMT3	O60678	531 aa		11.09	□□□□□ -0.63
NPAS3-208	ENST00000550662	OCLN	Q16625	522 aa		11.09	□□□□□ -0.63
NPAS3-208	ENST00000550662	TAS1R3	Q7RTX0	852 aa		11.09	□□□□□ -0.63
NPAS3-208	ENST00000550662	LCE2A	Q5TA79	106 aa	Predicted RBP	11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms