RNA–Protein interactions for RNA: ENST00000550444.1

HCFC2-205, Transcript of host cell factor C2, humanhuman

TSL 4

Gene HCFC2, Length 746 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-205ENST00000550444 TESK2Q96S53 571 aa24.14■■□□□ 1.45
HCFC2-205ENST00000550444 ANKRD36BQ8N2N9 1353 aa24.13■■□□□ 1.45
HCFC2-205ENST00000550444 MSH5O43196 834 aa24.12■■□□□ 1.45
HCFC2-205ENST00000550444 RRS1Q15050 365 aaKnown RBP24.11■■□□□ 1.45
HCFC2-205ENST00000550444 CCNL1Q9UK58 526 aaPredicted RBP24.11■■□□□ 1.45
HCFC2-205ENST00000550444 USHBP1Q8N6Y0 703 aa24.1■■□□□ 1.45
HCFC2-205ENST00000550444 SENP3-EIF4A1A0A087X0R7 540 aa24.08■■□□□ 1.45
HCFC2-205ENST00000550444 SLC24A1O60721 1099 aa24.08■■□□□ 1.45
HCFC2-205ENST00000550444 NBPF6Q5VWK0 638 aa24.08■■□□□ 1.45
HCFC2-205ENST00000550444 NBPF4Q96M43 638 aa24.08■■□□□ 1.45
HCFC2-205ENST00000550444 GGNBP2Q9H3C7 697 aa24.08■■□□□ 1.45
HCFC2-205ENST00000550444 NSD2O96028 1365 aa24.07■■□□□ 1.44
HCFC2-205ENST00000550444 C1QTNF8P60827 252 aa24.07■■□□□ 1.44
HCFC2-205ENST00000550444 NLGN2Q8NFZ4 835 aa24.07■■□□□ 1.44
HCFC2-205ENST00000550444 MEGF6O75095 1541 aa24.06■■□□□ 1.44
HCFC2-205ENST00000550444 RAPGEF4Q8WZA2 1011 aa24.06■■□□□ 1.44
HCFC2-205ENST00000550444 FAM208AQ9UK61 1670 aaKnown RBP24.05■■□□□ 1.44
HCFC2-205ENST00000550444 USP47Q96K76 1375 aa24.05■■□□□ 1.44
HCFC2-205ENST00000550444 FYB1O15117 783 aa24.05■■□□□ 1.44
HCFC2-205ENST00000550444 COL23A1Q86Y22 540 aaPredicted RBP24.04■■□□□ 1.44
HCFC2-205ENST00000550444 TATP17735 454 aaPredicted RBP24.03■■□□□ 1.44
HCFC2-205ENST00000550444 MSL1Q68DK7 614 aa24.03■■□□□ 1.44
HCFC2-205ENST00000550444 CHD4Q14839 1912 aa24.02■■□□□ 1.44
HCFC2-205ENST00000550444 RTL1A6NKG5 1358 aa24.02■■□□□ 1.44
HCFC2-205ENST00000550444 DOT1LQ8TEK3 1739 aa24.01■■□□□ 1.43
HCFC2-205ENST00000550444 TMF1P82094 1093 aa24.01■■□□□ 1.43
HCFC2-205ENST00000550444 CGNL1Q0VF96 1302 aa24.01■■□□□ 1.43
HCFC2-205ENST00000550444 SMG6Q86US8 1419 aaKnown RBP24.01■■□□□ 1.43
HCFC2-205ENST00000550444 HSP90AB2PQ58FF8 381 aa24■■□□□ 1.43
HCFC2-205ENST00000550444 RGPD2P0DJD1 1756 aa24■■□□□ 1.43
HCFC2-205ENST00000550444 GIGYF1O75420 1035 aaPredicted RBP23.98■■□□□ 1.43
HCFC2-205ENST00000550444 MPRIPQ6WCQ1 1025 aa23.98■■□□□ 1.43
HCFC2-205ENST00000550444 QSER1Q2KHR3 1735 aa23.98■■□□□ 1.43
HCFC2-205ENST00000550444 YBX3P16989 372 aaKnown RBP eCLIP23.97■■□□□ 1.43
HCFC2-205ENST00000550444 LY75O60449 1722 aa23.96■■□□□ 1.43
HCFC2-205ENST00000550444 GRIN3BO60391 1043 aa23.96■■□□□ 1.43
HCFC2-205ENST00000550444 TUBGCP6Q96RT7 1819 aa23.96■■□□□ 1.43
HCFC2-205ENST00000550444 PCDH11XQ9BZA7 1347 aa23.95■■□□□ 1.42
HCFC2-205ENST00000550444 PCDH11YQ9BZA8 1340 aa23.95■■□□□ 1.42
HCFC2-205ENST00000550444 SHANK3Q9BYB0 1731 aa23.95■■□□□ 1.42
HCFC2-205ENST00000550444 INSRP06213 1382 aa23.94■■□□□ 1.42
HCFC2-205ENST00000550444 PALLDQ8WX93 1383 aa23.93■■□□□ 1.42
HCFC2-205ENST00000550444 FLAD1Q8NFF5 587 aa23.92■■□□□ 1.42
HCFC2-205ENST00000550444 COL24A1Q17RW2 1714 aa23.92■■□□□ 1.42
HCFC2-205ENST00000550444 FLT4P35916 1363 aa23.91■■□□□ 1.42
HCFC2-205ENST00000550444 PPM1GO15355 546 aaPredicted RBP23.91■■□□□ 1.42
HCFC2-205ENST00000550444 CYP27B1O15528 508 aa23.91■■□□□ 1.42
HCFC2-205ENST00000550444 HMGB2P26583 209 aaKnown RBP23.9■■□□□ 1.42
HCFC2-205ENST00000550444 CDCA8Q53HL2 280 aa23.9■■□□□ 1.42
HCFC2-205ENST00000550444 EMILIN1Q9Y6C2 1016 aa23.9■■□□□ 1.42
HCFC2-205ENST00000550444 AK7Q96M32 723 aa23.89■■□□□ 1.41
HCFC2-205ENST00000550444 PHF14O94880 888 aa23.88■■□□□ 1.41
HCFC2-205ENST00000550444 SMARCC1Q92922 1105 aaPredicted RBP23.88■■□□□ 1.41
HCFC2-205ENST00000550444 CARD14Q9BXL6 1004 aa23.88■■□□□ 1.41
HCFC2-205ENST00000550444 CD2APQ9Y5K6 639 aa23.88■■□□□ 1.41
HCFC2-205ENST00000550444 SMIM5Q71RC9 77 aa23.87■■□□□ 1.41
HCFC2-205ENST00000550444 PIGBQ92521 554 aa23.86■■□□□ 1.41
HCFC2-205ENST00000550444 KIF24Q5T7B8 1368 aa23.85■■□□□ 1.41
HCFC2-205ENST00000550444 WWC3Q9ULE0 1092 aa23.84■■□□□ 1.41
HCFC2-205ENST00000550444 SPG7Q9UQ90 795 aa23.84■■□□□ 1.41
HCFC2-205ENST00000550444 GOLGB1Q14789 3259 aaKnown RBP23.84■■□□□ 1.41
HCFC2-205ENST00000550444 AMIGO3Q86WK7 504 aa23.83■■□□□ 1.41
HCFC2-205ENST00000550444 NSD3Q9BZ95 1437 aa23.83■■□□□ 1.4
HCFC2-205ENST00000550444 C5P01031 1676 aa23.83■■□□□ 1.4
HCFC2-205ENST00000550444 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.82■■□□□ 1.4
HCFC2-205ENST00000550444 ATP10DQ9P241 1426 aa23.8■■□□□ 1.4
HCFC2-205ENST00000550444 LOC102724428A0A0B4J2F2 783 aa23.79■■□□□ 1.4
HCFC2-205ENST00000550444 SIK1P57059 783 aa23.79■■□□□ 1.4
HCFC2-205ENST00000550444 NKX1-1Q15270 411 aaPredicted RBP23.79■■□□□ 1.4
HCFC2-205ENST00000550444 ZNF526Q8TF50 670 aaPredicted RBP23.79■■□□□ 1.4
HCFC2-205ENST00000550444 EYA1Q99502 592 aa23.79■■□□□ 1.4
HCFC2-205ENST00000550444 TMOD3Q9NYL9 352 aa23.79■■□□□ 1.4
HCFC2-205ENST00000550444 KIF20BQ96Q89 1820 aa23.78■■□□□ 1.4
HCFC2-205ENST00000550444 LINC00116Q8NCU8 138 aa23.78■■□□□ 1.4
HCFC2-205ENST00000550444 GPBP1L1Q9HC44 474 aaPredicted RBP23.78■■□□□ 1.4
HCFC2-205ENST00000550444 ASAP1Q9ULH1 1129 aa23.77■■□□□ 1.4
HCFC2-205ENST00000550444 WASHC2AQ641Q2 1341 aa23.77■■□□□ 1.4
HCFC2-205ENST00000550444 IGSF1Q8N6C5 1336 aa23.77■■□□□ 1.4
HCFC2-205ENST00000550444 C4BP0C0L5 1744 aa23.76■■□□□ 1.39
HCFC2-205ENST00000550444 SSFA2P28290 1259 aa23.76■■□□□ 1.39
HCFC2-205ENST00000550444 POLR3GLQ9BT43 218 aa23.76■■□□□ 1.39
HCFC2-205ENST00000550444 GNPATO15228 680 aa23.75■■□□□ 1.39
HCFC2-205ENST00000550444 ATP6V1AP38606 617 aa23.75■■□□□ 1.39
HCFC2-205ENST00000550444 TOGARAM1Q9Y4F4 1720 aa23.75■■□□□ 1.39
HCFC2-205ENST00000550444 TNNT2P45379 298 aaPredicted RBP23.74■■□□□ 1.39
HCFC2-205ENST00000550444 ITPK1Q13572 414 aa23.74■■□□□ 1.39
HCFC2-205ENST00000550444 IFNL2Q8IZJ0 200 aa23.74■■□□□ 1.39
HCFC2-205ENST00000550444 POLKQ9UBT6 870 aa23.74■■□□□ 1.39
HCFC2-205ENST00000550444 TAF1LQ8IZX4 1826 aa23.74■■□□□ 1.39
HCFC2-205ENST00000550444 PHKG2P15735 406 aa23.73■■□□□ 1.39
HCFC2-205ENST00000550444 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.73■■□□□ 1.39
HCFC2-205ENST00000550444 ITGB4P16144 1822 aa23.73■■□□□ 1.39
HCFC2-205ENST00000550444 NCAPD2Q15021 1401 aa23.72■■□□□ 1.39
HCFC2-205ENST00000550444 ATG3Q9NT62 314 aa23.71■■□□□ 1.39
HCFC2-205ENST00000550444 PKD1L3Q7Z443 1732 aa23.7■■□□□ 1.39
HCFC2-205ENST00000550444 MMP10P09238 476 aa23.68■■□□□ 1.38
HCFC2-205ENST00000550444 TRIM26Q12899 539 aaPredicted RBP23.68■■□□□ 1.38
HCFC2-205ENST00000550444 EIF4A2Q14240 407 aaKnown RBP23.68■■□□□ 1.38
HCFC2-205ENST00000550444 RBM42Q9BTD8 480 aaKnown RBP23.67■■□□□ 1.38
HCFC2-205ENST00000550444 ADCY9O60503 1353 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms