RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ADAMTS8Q9UP79 889 aa28.24■■■□□ 2.11
VPS29-206ENST00000549578 OVOS2A0A0G2JMS6 1433 aa28.24■■■□□ 2.11
VPS29-206ENST00000549578 SEPT12Q8IYM1 358 aa28.23■■■□□ 2.11
VPS29-206ENST00000549578 LRRC37A3O60309 1634 aa28.23■■■□□ 2.11
VPS29-206ENST00000549578 PRKAR2BP31323 418 aa28.23■■■□□ 2.11
VPS29-206ENST00000549578 RGS12O14924 1447 aa28.22■■■□□ 2.11
VPS29-206ENST00000549578 FCHSD2O94868 740 aa28.22■■■□□ 2.11
VPS29-206ENST00000549578 DDB1Q16531 1140 aa28.19■■■□□ 2.1
VPS29-206ENST00000549578 TNS2Q63HR2 1409 aa28.19■■■□□ 2.1
VPS29-206ENST00000549578 EXOC5O00471 708 aa28.18■■■□□ 2.1
VPS29-206ENST00000549578 FAM9BQ8IZU0 186 aa28.18■■■□□ 2.1
VPS29-206ENST00000549578 PKD1L3Q7Z443 1732 aa28.17■■■□□ 2.1
VPS29-206ENST00000549578 ZCRB1Q8TBF4 217 aaKnown RBP28.17■■■□□ 2.1
VPS29-206ENST00000549578 BRWD3Q6RI45 1802 aa28.16■■■□□ 2.1
VPS29-206ENST00000549578 CCDC146Q8IYE0 955 aa28.16■■■□□ 2.1
VPS29-206ENST00000549578 PHACTR3Q96KR7 559 aa28.16■■■□□ 2.1
VPS29-206ENST00000549578 SHANK3Q9BYB0 1731 aa28.15■■■□□ 2.1
VPS29-206ENST00000549578 PLEKHF1Q96S99 279 aa28.15■■■□□ 2.1
VPS29-206ENST00000549578 PLEKHO1Q53GL0 409 aaPredicted RBP28.14■■■□□ 2.1
VPS29-206ENST00000549578 PLEKHG2Q9H7P9 1386 aa28.14■■■□□ 2.1
VPS29-206ENST00000549578 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.13■■■□□ 2.09
VPS29-206ENST00000549578 SPG7Q9UQ90 795 aa28.13■■■□□ 2.09
VPS29-206ENST00000549578 DDX54Q8TDD1 881 aaKnown RBP28.13■■■□□ 2.09
VPS29-206ENST00000549578 PNNQ9H307 717 aaKnown RBP28.13■■■□□ 2.09
VPS29-206ENST00000549578 PDE3BQ13370 1112 aa28.12■■■□□ 2.09
VPS29-206ENST00000549578 AMOTQ4VCS5 1084 aa28.12■■■□□ 2.09
VPS29-206ENST00000549578 MTHFSDQ2M296 383 aaKnown RBP28.11■■■□□ 2.09
VPS29-206ENST00000549578 PCDH11XQ9BZA7 1347 aa28.1■■■□□ 2.09
VPS29-206ENST00000549578 PCDH11YQ9BZA8 1340 aa28.1■■■□□ 2.09
VPS29-206ENST00000549578 MAPK8IP3Q9UPT6 1336 aa28.1■■■□□ 2.09
VPS29-206ENST00000549578 ZNF530Q6P9A1 599 aaPredicted RBP28.1■■■□□ 2.09
VPS29-206ENST00000549578 CYP27B1O15528 508 aa28.09■■■□□ 2.09
VPS29-206ENST00000549578 NEFMP07197 916 aa28.09■■■□□ 2.09
VPS29-206ENST00000549578 KRT27Q7Z3Y8 459 aa28.09■■■□□ 2.09
VPS29-206ENST00000549578 MARCH10Q8NA82 808 aaPredicted RBP28.09■■■□□ 2.09
VPS29-206ENST00000549578 RUNDC1Q96C34 613 aa28.08■■■□□ 2.09
VPS29-206ENST00000549578 FAM182BQ5T319 152 aa28.08■■■□□ 2.08
VPS29-206ENST00000549578 GAS2L2Q8NHY3 880 aa28.06■■■□□ 2.08
VPS29-206ENST00000549578 PHKG2P15735 406 aa28.05■■■□□ 2.08
VPS29-206ENST00000549578 IFNL2Q8IZJ0 200 aa28.04■■■□□ 2.08
VPS29-206ENST00000549578 C1orf141Q5JVX7 400 aa28.03■■■□□ 2.08
VPS29-206ENST00000549578 SENP3-EIF4A1A0A087X0R7 540 aa28.02■■■□□ 2.08
VPS29-206ENST00000549578 NFE2L2Q16236 605 aa28.02■■■□□ 2.08
VPS29-206ENST00000549578 AKAP4Q5JQC9 854 aa28.01■■■□□ 2.07
VPS29-206ENST00000549578 RRP7AQ9Y3A4 280 aaKnown RBP28.01■■■□□ 2.07
VPS29-206ENST00000549578 APAF1O14727 1248 aa28■■■□□ 2.07
VPS29-206ENST00000549578 EP400Q96L91 3159 aa28■■■□□ 2.07
VPS29-206ENST00000549578 TMPOP42166 694 aaKnown RBP27.99■■■□□ 2.07
VPS29-206ENST00000549578 DLG5Q8TDM6 1919 aa27.99■■■□□ 2.07
VPS29-206ENST00000549578 MAP3K5Q99683 1374 aa27.99■■■□□ 2.07
VPS29-206ENST00000549578 NKX1-1Q15270 411 aaPredicted RBP27.97■■■□□ 2.07
VPS29-206ENST00000549578 NEUROD2Q15784 382 aa27.97■■■□□ 2.07
VPS29-206ENST00000549578 MPRIPQ6WCQ1 1025 aa27.97■■■□□ 2.07
VPS29-206ENST00000549578 GNAT3A8MTJ3 354 aa27.97■■■□□ 2.07
VPS29-206ENST00000549578 KDM6AO15550 1401 aaPredicted RBP27.96■■■□□ 2.07
VPS29-206ENST00000549578 HSP90AB1P08238 724 aaKnown RBP27.95■■■□□ 2.06
VPS29-206ENST00000549578 RIPK4P57078 832 aa27.95■■■□□ 2.06
VPS29-206ENST00000549578 ILDR2Q71H61 639 aa27.95■■■□□ 2.06
VPS29-206ENST00000549578 DOT1LQ8TEK3 1739 aa27.94■■■□□ 2.06
VPS29-206ENST00000549578 TOGARAM1Q9Y4F4 1720 aa27.94■■■□□ 2.06
VPS29-206ENST00000549578 FAM196AQ6ZSG2 479 aa27.94■■■□□ 2.06
VPS29-206ENST00000549578 DCAF5Q96JK2 942 aa27.94■■■□□ 2.06
VPS29-206ENST00000549578 ACSBG1Q96GR2 724 aa27.93■■■□□ 2.06
VPS29-206ENST00000549578 BCL9O00512 1426 aa27.93■■■□□ 2.06
VPS29-206ENST00000549578 LGR6Q9HBX8 967 aa27.92■■■□□ 2.06
VPS29-206ENST00000549578 VIRMAQ69YN4 1812 aaKnown RBP27.92■■■□□ 2.06
VPS29-206ENST00000549578 DCTN1Q14203 1278 aa27.92■■■□□ 2.06
VPS29-206ENST00000549578 SCN11AQ9UI33 1791 aa27.91■■■□□ 2.06
VPS29-206ENST00000549578 KAT6BQ8WYB5 2073 aa27.91■■■□□ 2.06
VPS29-206ENST00000549578 MCM10Q7L590 875 aa27.91■■■□□ 2.06
VPS29-206ENST00000549578 IL17REQ8NFR9 667 aa27.91■■■□□ 2.06
VPS29-206ENST00000549578 RTF1Q92541 710 aaKnown RBP27.91■■■□□ 2.06
VPS29-206ENST00000549578 ADAMTS7Q9UKP4 1686 aa27.9■■■□□ 2.06
VPS29-206ENST00000549578 RNMTO43148 476 aaKnown RBP27.9■■■□□ 2.06
VPS29-206ENST00000549578 SBF2Q86WG5 1849 aa27.9■■■□□ 2.06
VPS29-206ENST00000549578 SYTL4Q96C24 671 aaPredicted RBP27.88■■■□□ 2.05
VPS29-206ENST00000549578 TRIM35Q9UPQ4 493 aa27.88■■■□□ 2.05
VPS29-206ENST00000549578 SALL2Q9Y467 1007 aaPredicted RBP27.88■■■□□ 2.05
VPS29-206ENST00000549578 KCNQ2O43526 872 aa27.87■■■□□ 2.05
VPS29-206ENST00000549578 HTATSF1O43719 755 aaKnown RBP27.87■■■□□ 2.05
VPS29-206ENST00000549578 PRIM1P49642 420 aaKnown RBP27.87■■■□□ 2.05
VPS29-206ENST00000549578 THUMPD2Q9BTF0 503 aaKnown RBP27.87■■■□□ 2.05
VPS29-206ENST00000549578 PTF1AQ7RTS3 328 aa27.87■■■□□ 2.05
VPS29-206ENST00000549578 NHSQ6T4R5 1651 aa27.86■■■□□ 2.05
VPS29-206ENST00000549578 LMOD3Q0VAK6 560 aa27.86■■■□□ 2.05
VPS29-206ENST00000549578 ITGB4P16144 1822 aa27.86■■■□□ 2.05
VPS29-206ENST00000549578 CEMIPQ8WUJ3 1361 aa27.86■■■□□ 2.05
VPS29-206ENST00000549578 ERVV-2B6SEH9 535 aa27.85■■■□□ 2.05
VPS29-206ENST00000549578 TRIM37O94972 964 aa27.85■■■□□ 2.05
VPS29-206ENST00000549578 CABP4P57796 275 aa27.83■■■□□ 2.05
VPS29-206ENST00000549578 MRC1P22897 1456 aa27.83■■■□□ 2.05
VPS29-206ENST00000549578 TEFQ10587 303 aa27.82■■■□□ 2.04
VPS29-206ENST00000549578 NFATC2IPQ8NCF5 419 aa27.82■■■□□ 2.04
VPS29-206ENST00000549578 SLC52A2Q9HAB3 445 aa27.82■■■□□ 2.04
VPS29-206ENST00000549578 TMOD3Q9NYL9 352 aa27.82■■■□□ 2.04
VPS29-206ENST00000549578 PIGBQ92521 554 aa27.8■■■□□ 2.04
VPS29-206ENST00000549578 BCL11BQ9C0K0 894 aaPredicted RBP27.8■■■□□ 2.04
VPS29-206ENST00000549578 CCDC27Q2M243 656 aa27.79■■■□□ 2.04
VPS29-206ENST00000549578 WWC1Q8IX03 1113 aa27.78■■■□□ 2.04
VPS29-206ENST00000549578 SIPA1L3O60292 1781 aaPredicted RBP27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms