RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 NBPF6Q5VWK0 638 aa12.93□□□□□ -0.34
SMARCD1-206ENST00000549274 NBPF4Q96M43 638 aa12.93□□□□□ -0.34
SMARCD1-206ENST00000549274 GJD4Q96KN9 370 aaPredicted RBP12.92□□□□□ -0.34
SMARCD1-206ENST00000549274 SPG7Q9UQ90 795 aa12.92□□□□□ -0.34
SMARCD1-206ENST00000549274 RBM6P78332 1123 aaKnown RBP12.91□□□□□ -0.34
SMARCD1-206ENST00000549274 PLEKHO1Q53GL0 409 aaPredicted RBP12.91□□□□□ -0.34
SMARCD1-206ENST00000549274 FAM9BQ8IZU0 186 aa12.91□□□□□ -0.34
SMARCD1-206ENST00000549274 GAS2L2Q8NHY3 880 aa12.91□□□□□ -0.34
SMARCD1-206ENST00000549274 RUNDC1Q96C34 613 aa12.91□□□□□ -0.34
SMARCD1-206ENST00000549274 RSPH6AQ9H0K4 717 aa12.91□□□□□ -0.34
SMARCD1-206ENST00000549274 QTRT2Q9H974 415 aaKnown RBP12.91□□□□□ -0.34
SMARCD1-206ENST00000549274 PKD1L3Q7Z443 1732 aa12.91□□□□□ -0.34
SMARCD1-206ENST00000549274 OVOS2A0A0G2JMS6 1433 aa12.9□□□□□ -0.34
SMARCD1-206ENST00000549274 LMOD3Q0VAK6 560 aa12.9□□□□□ -0.34
SMARCD1-206ENST00000549274 ADAMTS8Q9UP79 889 aa12.9□□□□□ -0.34
SMARCD1-206ENST00000549274 DISP2A7MBM2 1401 aa12.89□□□□□ -0.35
SMARCD1-206ENST00000549274 HSP90AB1P08238 724 aaKnown RBP12.89□□□□□ -0.35
SMARCD1-206ENST00000549274 HMOX1P09601 288 aa12.89□□□□□ -0.35
SMARCD1-206ENST00000549274 PRKAR2BP31323 418 aa12.89□□□□□ -0.35
SMARCD1-206ENST00000549274 CCDC184Q52MB2 194 aa12.89□□□□□ -0.35
SMARCD1-206ENST00000549274 PCDH11XQ9BZA7 1347 aa12.88□□□□□ -0.35
SMARCD1-206ENST00000549274 PCDH11YQ9BZA8 1340 aa12.88□□□□□ -0.35
SMARCD1-206ENST00000549274 TNS2Q63HR2 1409 aa12.88□□□□□ -0.35
SMARCD1-206ENST00000549274 C1orf141Q5JVX7 400 aa12.88□□□□□ -0.35
SMARCD1-206ENST00000549274 USP35Q9P2H5 1018 aa12.88□□□□□ -0.35
SMARCD1-206ENST00000549274 THSD7AQ9UPZ6 1657 aa12.87□□□□□ -0.35
SMARCD1-206ENST00000549274 GLI3P10071 1580 aa12.87□□□□□ -0.35
SMARCD1-206ENST00000549274 EXOC5O00471 708 aa12.87□□□□□ -0.35
SMARCD1-206ENST00000549274 RXRBP28702 533 aa12.87□□□□□ -0.35
SMARCD1-206ENST00000549274 USHBP1Q8N6Y0 703 aa12.87□□□□□ -0.35
SMARCD1-206ENST00000549274 ZCRB1Q8TBF4 217 aaKnown RBP12.87□□□□□ -0.35
SMARCD1-206ENST00000549274 HTATSF1O43719 755 aaKnown RBP12.86□□□□□ -0.35
SMARCD1-206ENST00000549274 ONECUT3O60422 494 aaPredicted RBP12.86□□□□□ -0.35
SMARCD1-206ENST00000549274 DDB1Q16531 1140 aa12.86□□□□□ -0.35
SMARCD1-206ENST00000549274 AEBP1Q8IUX7 1158 aa12.86□□□□□ -0.35
SMARCD1-206ENST00000549274 PLEKHF1Q96S99 279 aa12.86□□□□□ -0.35
SMARCD1-206ENST00000549274 MEGF6O75095 1541 aa12.86□□□□□ -0.35
SMARCD1-206ENST00000549274 A0A0G2JS52 829 aa12.85□□□□□ -0.35
SMARCD1-206ENST00000549274 MYT1Q01538 1121 aa12.85□□□□□ -0.35
SMARCD1-206ENST00000549274 CALD1Q05682 793 aaKnown RBP12.85□□□□□ -0.35
SMARCD1-206ENST00000549274 NFE2L2Q16236 605 aa12.85□□□□□ -0.35
SMARCD1-206ENST00000549274 FAM98CQ17RN3 349 aaKnown RBP12.85□□□□□ -0.35
SMARCD1-206ENST00000549274 AKAP4Q5JQC9 854 aa12.85□□□□□ -0.35
SMARCD1-206ENST00000549274 IFNL2Q8IZJ0 200 aa12.85□□□□□ -0.35
SMARCD1-206ENST00000549274 RTF1Q92541 710 aaKnown RBP12.85□□□□□ -0.35
SMARCD1-206ENST00000549274 LRRC37A3O60309 1634 aa12.84□□□□□ -0.35
SMARCD1-206ENST00000549274 MAP3K5Q99683 1374 aa12.83□□□□□ -0.36
SMARCD1-206ENST00000549274 GNAT3A8MTJ3 354 aa12.83□□□□□ -0.36
SMARCD1-206ENST00000549274 PDE3BQ13370 1112 aa12.83□□□□□ -0.36
SMARCD1-206ENST00000549274 CCDC27Q2M243 656 aa12.83□□□□□ -0.36
SMARCD1-206ENST00000549274 ZNF530Q6P9A1 599 aaPredicted RBP12.83□□□□□ -0.36
SMARCD1-206ENST00000549274 DLG5Q8TDM6 1919 aa12.83□□□□□ -0.36
SMARCD1-206ENST00000549274 TMPOP42166 694 aaKnown RBP12.82□□□□□ -0.36
SMARCD1-206ENST00000549274 CCDC146Q8IYE0 955 aa12.82□□□□□ -0.36
SMARCD1-206ENST00000549274 VIRMAQ69YN4 1812 aaKnown RBP12.81□□□□□ -0.36
SMARCD1-206ENST00000549274 MTHFSDQ2M296 383 aaKnown RBP12.81□□□□□ -0.36
SMARCD1-206ENST00000549274 DCAF5Q96JK2 942 aa12.81□□□□□ -0.36
SMARCD1-206ENST00000549274 FOXD4L1Q9NU39 408 aa12.81□□□□□ -0.36
SMARCD1-206ENST00000549274 SHANK3Q9BYB0 1731 aa12.81□□□□□ -0.36
SMARCD1-206ENST00000549274 BCL9O00512 1426 aa12.8□□□□□ -0.36
SMARCD1-206ENST00000549274 SCN11AQ9UI33 1791 aa12.8□□□□□ -0.36
SMARCD1-206ENST00000549274 APAF1O14727 1248 aa12.8□□□□□ -0.36
SMARCD1-206ENST00000549274 PHKG2P15735 406 aa12.8□□□□□ -0.36
SMARCD1-206ENST00000549274 RIPK4P57078 832 aa12.8□□□□□ -0.36
SMARCD1-206ENST00000549274 SEPT12Q8IYM1 358 aa12.8□□□□□ -0.36
SMARCD1-206ENST00000549274 C1QBPQ07021 282 aaKnown RBP12.79□□□□□ -0.36
SMARCD1-206ENST00000549274 NKX1-1Q15270 411 aaPredicted RBP12.79□□□□□ -0.36
SMARCD1-206ENST00000549274 PHACTR3Q96KR7 559 aa12.79□□□□□ -0.36
SMARCD1-206ENST00000549274 RGS17Q9UGC6 210 aaPredicted RBP12.79□□□□□ -0.36
SMARCD1-206ENST00000549274 KAT6BQ8WYB5 2073 aa12.78□□□□□ -0.36
SMARCD1-206ENST00000549274 ADAMTS7Q9UKP4 1686 aa12.78□□□□□ -0.36
SMARCD1-206ENST00000549274 ERVV-2B6SEH9 535 aa12.78□□□□□ -0.36
SMARCD1-206ENST00000549274 HNRNPUQ00839 825 aaKnown RBP eCLIP12.78□□□□□ -0.36
SMARCD1-206ENST00000549274 BRWD3Q6RI45 1802 aa12.77□□□□□ -0.37
SMARCD1-206ENST00000549274 HMGB2P26583 209 aaKnown RBP12.77□□□□□ -0.37
SMARCD1-206ENST00000549274 TEFQ10587 303 aa12.77□□□□□ -0.37
SMARCD1-206ENST00000549274 POTEAQ6S8J7 498 aa12.77□□□□□ -0.37
SMARCD1-206ENST00000549274 KRT27Q7Z3Y8 459 aa12.77□□□□□ -0.37
SMARCD1-206ENST00000549274 WDR63Q8IWG1 891 aa12.77□□□□□ -0.37
SMARCD1-206ENST00000549274 DDX54Q8TDD1 881 aaKnown RBP12.77□□□□□ -0.37
SMARCD1-206ENST00000549274 BABAM1Q9NWV8 329 aa12.77□□□□□ -0.37
SMARCD1-206ENST00000549274 IL16Q14005 1332 aa12.77□□□□□ -0.37
SMARCD1-206ENST00000549274 CYP27B1O15528 508 aa12.76□□□□□ -0.37
SMARCD1-206ENST00000549274 FAM196AQ6ZSG2 479 aa12.76□□□□□ -0.37
SMARCD1-206ENST00000549274 ZBED9Q6R2W3 1325 aa12.76□□□□□ -0.37
SMARCD1-206ENST00000549274 CEMIPQ8WUJ3 1361 aa12.76□□□□□ -0.37
SMARCD1-206ENST00000549274 RGS12O14924 1447 aa12.76□□□□□ -0.37
SMARCD1-206ENST00000549274 MRC1P22897 1456 aa12.75□□□□□ -0.37
SMARCD1-206ENST00000549274 HOXD11P31277 338 aaPredicted RBP12.75□□□□□ -0.37
SMARCD1-206ENST00000549274 NEUROD2Q15784 382 aa12.75□□□□□ -0.37
SMARCD1-206ENST00000549274 RNMTO43148 476 aaKnown RBP12.74□□□□□ -0.37
SMARCD1-206ENST00000549274 WWC1Q8IX03 1113 aa12.74□□□□□ -0.37
SMARCD1-206ENST00000549274 DOT1LQ8TEK3 1739 aa12.74□□□□□ -0.37
SMARCD1-206ENST00000549274 CABP4P57796 275 aa12.73□□□□□ -0.37
SMARCD1-206ENST00000549274 GNAI1P63096 354 aa12.73□□□□□ -0.37
SMARCD1-206ENST00000549274 MARCH10Q8NA82 808 aaPredicted RBP12.73□□□□□ -0.37
SMARCD1-206ENST00000549274 CHMP4AQ9BY43 222 aa12.73□□□□□ -0.37
SMARCD1-206ENST00000549274 RRP7AQ9Y3A4 280 aaKnown RBP12.73□□□□□ -0.37
SMARCD1-206ENST00000549274 ITGB4P16144 1822 aa12.73□□□□□ -0.37
SMARCD1-206ENST00000549274 NHSQ6T4R5 1651 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms