RNA–Protein interactions for RNA: ENST00000548645.5

NPAS3-206, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NPAS3, Length 2,926 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-206ENST00000548645 CDK19Q9BWU1 502 aa28.32■■■□□ 2.12
NPAS3-206ENST00000548645 CCDC39Q9UFE4 941 aa28.32■■■□□ 2.12
NPAS3-206ENST00000548645 IDI1Q13907 227 aa28.31■■■□□ 2.12
NPAS3-206ENST00000548645 FAM13BQ9NYF5 915 aa28.31■■■□□ 2.12
NPAS3-206ENST00000548645 RIMBP3CA6NJZ7 1639 aa28.3■■■□□ 2.12
NPAS3-206ENST00000548645 RIMBP3BA6NNM3 1639 aa28.3■■■□□ 2.12
NPAS3-206ENST00000548645 RIMBP3Q9UFD9 1639 aa28.3■■■□□ 2.12
NPAS3-206ENST00000548645 TMEM63CQ9P1W3 806 aa28.3■■■□□ 2.12
NPAS3-206ENST00000548645 UQCRHLA0A096LP55 91 aa28.29■■■□□ 2.12
NPAS3-206ENST00000548645 MBD3O95983 291 aa28.29■■■□□ 2.12
NPAS3-206ENST00000548645 UQCRHP07919 91 aa28.29■■■□□ 2.12
NPAS3-206ENST00000548645 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.29■■■□□ 2.12
NPAS3-206ENST00000548645 FBLN1P23142 703 aa28.29■■■□□ 2.12
NPAS3-206ENST00000548645 OTUD7AQ8TE49 926 aaPredicted RBP28.29■■■□□ 2.12
NPAS3-206ENST00000548645 SYCE3A1L190 88 aa28.28■■■□□ 2.12
NPAS3-206ENST00000548645 SENP3Q9H4L4 574 aaPredicted RBP28.28■■■□□ 2.12
NPAS3-206ENST00000548645 SLC52A1Q9NWF4 448 aa28.28■■■□□ 2.12
NPAS3-206ENST00000548645 ATP10DQ9P241 1426 aa28.27■■■□□ 2.12
NPAS3-206ENST00000548645 MTERF4Q7Z6M4 381 aaKnown RBP28.27■■■□□ 2.12
NPAS3-206ENST00000548645 ERC2O15083 957 aa28.26■■■□□ 2.12
NPAS3-206ENST00000548645 IL13P35225 146 aa28.26■■■□□ 2.12
NPAS3-206ENST00000548645 DYNC1I1O14576 645 aa28.25■■■□□ 2.11
NPAS3-206ENST00000548645 CEP85Q6P2H3 762 aa28.25■■■□□ 2.11
NPAS3-206ENST00000548645 ARHGEF40Q8TER5 1519 aa28.25■■■□□ 2.11
NPAS3-206ENST00000548645 RIMS2Q9UQ26 1411 aa28.24■■■□□ 2.11
NPAS3-206ENST00000548645 HAP1P54257 671 aaPredicted RBP28.24■■■□□ 2.11
NPAS3-206ENST00000548645 MAP2P11137 1827 aaKnown RBP28.22■■■□□ 2.11
NPAS3-206ENST00000548645 EMILIN1Q9Y6C2 1016 aa28.22■■■□□ 2.11
NPAS3-206ENST00000548645 SMARCA5O60264 1052 aaPredicted RBP28.22■■■□□ 2.11
NPAS3-206ENST00000548645 SASS6Q6UVJ0 657 aa28.22■■■□□ 2.11
NPAS3-206ENST00000548645 MCM2P49736 904 aa28.21■■■□□ 2.11
NPAS3-206ENST00000548645 NSFL1CQ9UNZ2 370 aaKnown RBP28.21■■■□□ 2.11
NPAS3-206ENST00000548645 CPSF1Q10570 1443 aaKnown RBP28.21■■■□□ 2.11
NPAS3-206ENST00000548645 ATP7BP35670 1465 aa28.2■■■□□ 2.11
NPAS3-206ENST00000548645 APBB1O00213 710 aa28.19■■■□□ 2.1
NPAS3-206ENST00000548645 CDK12Q9NYV4 1490 aaPredicted RBP28.19■■■□□ 2.1
NPAS3-206ENST00000548645 RAPGEF3O95398 923 aa28.19■■■□□ 2.1
NPAS3-206ENST00000548645 TMX3Q96JJ7 454 aa28.19■■■□□ 2.1
NPAS3-206ENST00000548645 RTL1A6NKG5 1358 aa28.18■■■□□ 2.1
NPAS3-206ENST00000548645 NEK4P51957 841 aa28.18■■■□□ 2.1
NPAS3-206ENST00000548645 FAM69CQ0P6D2 419 aa28.18■■■□□ 2.1
NPAS3-206ENST00000548645 SYAP1Q96A49 352 aaPredicted RBP28.18■■■□□ 2.1
NPAS3-206ENST00000548645 CHAMP1Q96JM3 812 aa28.18■■■□□ 2.1
NPAS3-206ENST00000548645 FAM83GA6ND36 823 aa28.18■■■□□ 2.1
NPAS3-206ENST00000548645 DLG5Q8TDM6 1919 aa28.17■■■□□ 2.1
NPAS3-206ENST00000548645 BRD1O95696 1058 aa28.17■■■□□ 2.1
NPAS3-206ENST00000548645 FOXD4L5Q5VV16 416 aaPredicted RBP28.17■■■□□ 2.1
NPAS3-206ENST00000548645 RNF214Q8ND24 703 aa28.17■■■□□ 2.1
NPAS3-206ENST00000548645 FOXD4L4Q8WXT5 416 aaPredicted RBP28.17■■■□□ 2.1
NPAS3-206ENST00000548645 TSPY26PQ9H489 355 aa28.17■■■□□ 2.1
NPAS3-206ENST00000548645 RGS12O14924 1447 aa28.16■■■□□ 2.1
NPAS3-206ENST00000548645 HMMRO75330 724 aa28.15■■■□□ 2.1
NPAS3-206ENST00000548645 PTMAP06454 111 aaKnown RBP28.15■■■□□ 2.1
NPAS3-206ENST00000548645 OSBPL3Q9H4L5 887 aa28.15■■■□□ 2.1
NPAS3-206ENST00000548645 PTPRCP08575 1304 aa28.15■■■□□ 2.1
NPAS3-206ENST00000548645 MSH6P52701 1360 aa28.14■■■□□ 2.1
NPAS3-206ENST00000548645 DCTN1Q14203 1278 aa28.14■■■□□ 2.1
NPAS3-206ENST00000548645 CUL4AQ13619 759 aa28.13■■■□□ 2.09
NPAS3-206ENST00000548645 MYO5BQ9ULV0 1848 aa28.13■■■□□ 2.09
NPAS3-206ENST00000548645 KIAA2012Q0VF49 1180 aa28.13■■■□□ 2.09
NPAS3-206ENST00000548645 AATKQ6ZMQ8 1374 aa28.13■■■□□ 2.09
NPAS3-206ENST00000548645 MEIS3Q99687 375 aa28.12■■■□□ 2.09
NPAS3-206ENST00000548645 TMEM131LA2VDJ0 1609 aa28.12■■■□□ 2.09
NPAS3-206ENST00000548645 INTS4Q96HW7 963 aaKnown RBP28.12■■■□□ 2.09
NPAS3-206ENST00000548645 PHF14O94880 888 aa28.12■■■□□ 2.09
NPAS3-206ENST00000548645 MCCP23508 829 aa28.12■■■□□ 2.09
NPAS3-206ENST00000548645 PDE1AP54750 535 aa28.11■■■□□ 2.09
NPAS3-206ENST00000548645 EDC4Q6P2E9 1401 aaKnown RBP28.1■■■□□ 2.09
NPAS3-206ENST00000548645 ALKQ9UM73 1620 aa28.1■■■□□ 2.09
NPAS3-206ENST00000548645 NME9Q86XW9 330 aa28.08■■■□□ 2.09
NPAS3-206ENST00000548645 ANAPC15P60006 121 aa28.08■■■□□ 2.09
NPAS3-206ENST00000548645 KIAA0232Q92628 1395 aa28.08■■■□□ 2.08
NPAS3-206ENST00000548645 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP28.07■■■□□ 2.08
NPAS3-206ENST00000548645 CHL1O00533 1208 aa28.06■■■□□ 2.08
NPAS3-206ENST00000548645 FAM184AQ8NB25 1140 aa28.06■■■□□ 2.08
NPAS3-206ENST00000548645 ESYT1Q9BSJ8 1104 aa28.06■■■□□ 2.08
NPAS3-206ENST00000548645 KRT24Q2M2I5 525 aa28.05■■■□□ 2.08
NPAS3-206ENST00000548645 PRDM4Q9UKN5 801 aa28.05■■■□□ 2.08
NPAS3-206ENST00000548645 UVSSAQ2YD98 709 aa28.05■■■□□ 2.08
NPAS3-206ENST00000548645 SMAP1Q8IYB5 467 aaPredicted RBP28.05■■■□□ 2.08
NPAS3-206ENST00000548645 COG3Q96JB2 828 aa28.05■■■□□ 2.08
NPAS3-206ENST00000548645 DNTTIP2Q5QJE6 756 aaKnown RBP28.03■■■□□ 2.08
NPAS3-206ENST00000548645 MYRIPQ8NFW9 859 aa28.03■■■□□ 2.08
NPAS3-206ENST00000548645 RRS1Q15050 365 aaKnown RBP28.02■■■□□ 2.08
NPAS3-206ENST00000548645 ZRANB1Q9UGI0 708 aa28.02■■■□□ 2.08
NPAS3-206ENST00000548645 DLC1Q96QB1 1528 aa28.02■■■□□ 2.08
NPAS3-206ENST00000548645 WAPLQ7Z5K2 1190 aa28.02■■■□□ 2.08
NPAS3-206ENST00000548645 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.02■■■□□ 2.08
NPAS3-206ENST00000548645 DIP2CQ9Y2E4 1556 aa28.01■■■□□ 2.07
NPAS3-206ENST00000548645 PREX1Q8TCU6 1659 aa28.01■■■□□ 2.07
NPAS3-206ENST00000548645 WDR33Q9C0J8 1336 aaKnown RBP28■■■□□ 2.07
NPAS3-206ENST00000548645 PRIMPOLQ96LW4 560 aa28■■■□□ 2.07
NPAS3-206ENST00000548645 PALD1Q9ULE6 856 aa28■■■□□ 2.07
NPAS3-206ENST00000548645 SLC4A2P04920 1241 aa27.99■■■□□ 2.07
NPAS3-206ENST00000548645 ANO2Q9NQ90 1003 aa27.99■■■□□ 2.07
NPAS3-206ENST00000548645 SSH2Q76I76 1423 aa27.99■■■□□ 2.07
NPAS3-206ENST00000548645 CCT4P50991 539 aaKnown RBP27.98■■■□□ 2.07
NPAS3-206ENST00000548645 HMGN5P82970 282 aaKnown RBP27.98■■■□□ 2.07
NPAS3-206ENST00000548645 NOL8Q76FK4 1167 aaKnown RBP27.98■■■□□ 2.07
NPAS3-206ENST00000548645 PIBF1Q8WXW3 757 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms