RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 GADD45BO75293 160 aaPredicted RBP17.4■□□□□ 0.38
RAPGEF3-216ENST00000547856 ANKRD7Q92527 254 aa17.4■□□□□ 0.38
RAPGEF3-216ENST00000547856 GLI2P10070 1586 aa17.4■□□□□ 0.38
RAPGEF3-216ENST00000547856 ST18O60284 1047 aa17.4■□□□□ 0.38
RAPGEF3-216ENST00000547856 TAF7LQ5H9L4 462 aa17.4■□□□□ 0.38
RAPGEF3-216ENST00000547856 PYCARDQ9ULZ3 195 aa17.39■□□□□ 0.37
RAPGEF3-216ENST00000547856 CCDC27Q2M243 656 aa17.39■□□□□ 0.37
RAPGEF3-216ENST00000547856 USP26Q9BXU7 913 aa17.39■□□□□ 0.37
RAPGEF3-216ENST00000547856 DIAPH3Q9NSV4 1193 aa17.39■□□□□ 0.37
RAPGEF3-216ENST00000547856 OGFRQ9NZT2 677 aa17.39■□□□□ 0.37
RAPGEF3-216ENST00000547856 NSD3Q9BZ95 1437 aa17.39■□□□□ 0.37
RAPGEF3-216ENST00000547856 MYO5BQ9ULV0 1848 aa17.39■□□□□ 0.37
RAPGEF3-216ENST00000547856 SMARCA5O60264 1052 aaPredicted RBP17.38■□□□□ 0.37
RAPGEF3-216ENST00000547856 HCLS1P14317 486 aaPredicted RBP17.38■□□□□ 0.37
RAPGEF3-216ENST00000547856 SPC24Q8NBT2 197 aa17.38■□□□□ 0.37
RAPGEF3-216ENST00000547856 SPTLC3Q9NUV7 552 aa17.38■□□□□ 0.37
RAPGEF3-216ENST00000547856 ERICH4A6NGS2 130 aa17.38■□□□□ 0.37
RAPGEF3-216ENST00000547856 VGFO15240 615 aaPredicted RBP17.38■□□□□ 0.37
RAPGEF3-216ENST00000547856 NAA30Q147X3 362 aaPredicted RBP17.38■□□□□ 0.37
RAPGEF3-216ENST00000547856 TRERF1Q96PN7 1200 aa17.38■□□□□ 0.37
RAPGEF3-216ENST00000547856 SENP3Q9H4L4 574 aaPredicted RBP17.38■□□□□ 0.37
RAPGEF3-216ENST00000547856 IQSEC2Q5JU85 1478 aa17.37■□□□□ 0.37
RAPGEF3-216ENST00000547856 ARHGEF28Q8N1W1 1705 aaKnown RBP17.37■□□□□ 0.37
RAPGEF3-216ENST00000547856 C16orf71Q8IYS4 520 aaPredicted RBP17.37■□□□□ 0.37
RAPGEF3-216ENST00000547856 IPO8O15397 1037 aaKnown RBP17.36■□□□□ 0.37
RAPGEF3-216ENST00000547856 SYAP1Q96A49 352 aaPredicted RBP17.36■□□□□ 0.37
RAPGEF3-216ENST00000547856 GCC1Q96CN9 775 aa17.36■□□□□ 0.37
RAPGEF3-216ENST00000547856 FEZ1Q99689 392 aa17.36■□□□□ 0.37
RAPGEF3-216ENST00000547856 PPIP5K1Q6PFW1 1433 aa17.36■□□□□ 0.37
RAPGEF3-216ENST00000547856 U2SURPO15042 1029 aaKnown RBP17.35■□□□□ 0.37
RAPGEF3-216ENST00000547856 SLFN14P0C7P3 912 aa17.35■□□□□ 0.37
RAPGEF3-216ENST00000547856 CERS3Q8IU89 383 aa17.35■□□□□ 0.37
RAPGEF3-216ENST00000547856 CFAP53Q96M91 514 aa17.35■□□□□ 0.37
RAPGEF3-216ENST00000547856 NCBP1Q09161 790 aaKnown RBP17.35■□□□□ 0.37
RAPGEF3-216ENST00000547856 APBB1O00213 710 aa17.34■□□□□ 0.37
RAPGEF3-216ENST00000547856 SIRT2Q8IXJ6 389 aa17.34■□□□□ 0.37
RAPGEF3-216ENST00000547856 TULP4Q9NRJ4 1543 aa17.34■□□□□ 0.37
RAPGEF3-216ENST00000547856 KIAA1524Q8TCG1 905 aa17.34■□□□□ 0.37
RAPGEF3-216ENST00000547856 KCNF1Q9H3M0 494 aa17.34■□□□□ 0.37
RAPGEF3-216ENST00000547856 PREX1Q8TCU6 1659 aa17.34■□□□□ 0.37
RAPGEF3-216ENST00000547856 CT47B1P0C2W7 299 aaPredicted RBP17.33■□□□□ 0.36
RAPGEF3-216ENST00000547856 SLC52A1Q9NWF4 448 aa17.33■□□□□ 0.36
RAPGEF3-216ENST00000547856 CTNNA3Q9UI47 895 aa17.33■□□□□ 0.36
RAPGEF3-216ENST00000547856 ZBTB7BO15156 539 aaPredicted RBP17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 USP48Q86UV5 1035 aa17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 PLEKHM2Q8IWE5 1019 aa17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 SHPRHQ149N8 1683 aa17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 CTIFO43310 598 aaKnown RBP17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 PHF14O94880 888 aa17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 NEK4P51957 841 aa17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 SAFB2Q14151 953 aaKnown RBP eCLIP17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 OTUD7AQ8TE49 926 aaPredicted RBP17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 TMEM131LA2VDJ0 1609 aa17.32■□□□□ 0.36
RAPGEF3-216ENST00000547856 GABPB1Q06547 395 aaPredicted RBP17.31■□□□□ 0.36
RAPGEF3-216ENST00000547856 FBXO31Q5XUX0 539 aaPredicted RBP17.31■□□□□ 0.36
RAPGEF3-216ENST00000547856 FAM69CQ0P6D2 419 aa17.31■□□□□ 0.36
RAPGEF3-216ENST00000547856 TMX3Q96JJ7 454 aa17.31■□□□□ 0.36
RAPGEF3-216ENST00000547856 INTS3Q68E01 1043 aaKnown RBP17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 CABP2Q9NPB3 220 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 TRIM35Q9UPQ4 493 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 EVC2Q86UK5 1308 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 TSPOAP1O95153 1857 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 ZFYVE9O95405 1425 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 AP5Z1O43299 807 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 KDM4AO75164 1064 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 UVSSAQ2YD98 709 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 FAM184AQ8NB25 1140 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 C16orf45Q96MC5 204 aaPredicted RBP17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 TIGD1Q96MW7 591 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 STK26Q9P289 416 aa17.3■□□□□ 0.36
RAPGEF3-216ENST00000547856 USP32Q8NFA0 1604 aa17.29■□□□□ 0.36
RAPGEF3-216ENST00000547856 BRD1O95696 1058 aa17.29■□□□□ 0.36
RAPGEF3-216ENST00000547856 TMPOP42166 694 aaKnown RBP17.29■□□□□ 0.36
RAPGEF3-216ENST00000547856 CCDC66A2RUB6 948 aa17.29■□□□□ 0.36
RAPGEF3-216ENST00000547856 ELL2O00472 640 aaPredicted RBP17.29■□□□□ 0.36
RAPGEF3-216ENST00000547856 TERF2Q15554 542 aa17.29■□□□□ 0.36
RAPGEF3-216ENST00000547856 AEBP1Q8IUX7 1158 aa17.29■□□□□ 0.36
RAPGEF3-216ENST00000547856 ATAD2Q6PL18 1390 aa17.29■□□□□ 0.36
RAPGEF3-216ENST00000547856 TTC22Q5TAA0 569 aa17.28■□□□□ 0.36
RAPGEF3-216ENST00000547856 DDX41Q9UJV9 622 aaKnown RBP17.28■□□□□ 0.36
RAPGEF3-216ENST00000547856 RIMBP3CA6NJZ7 1639 aa17.28■□□□□ 0.36
RAPGEF3-216ENST00000547856 RIMBP3BA6NNM3 1639 aa17.28■□□□□ 0.36
RAPGEF3-216ENST00000547856 RIMBP3Q9UFD9 1639 aa17.28■□□□□ 0.36
RAPGEF3-216ENST00000547856 ZBTB9Q96C00 473 aa17.27■□□□□ 0.36
RAPGEF3-216ENST00000547856 DIP2BQ9P265 1576 aa17.27■□□□□ 0.36
RAPGEF3-216ENST00000547856 TRIM6-TRIM34B2RNG4 842 aa17.27■□□□□ 0.35
RAPGEF3-216ENST00000547856 SDSP20132 328 aa17.27■□□□□ 0.35
RAPGEF3-216ENST00000547856 PUS7Q96PZ0 661 aaKnown RBP17.27■□□□□ 0.35
RAPGEF3-216ENST00000547856 TRIM34Q9BYJ4 488 aa17.27■□□□□ 0.35
RAPGEF3-216ENST00000547856 DNAJC2Q99543 621 aaKnown RBP17.26■□□□□ 0.35
RAPGEF3-216ENST00000547856 CAPN2P17655 700 aa17.26■□□□□ 0.35
RAPGEF3-216ENST00000547856 GIMAP6Q6P9H5 292 aa17.26■□□□□ 0.35
RAPGEF3-216ENST00000547856 ANKRD36BQ8N2N9 1353 aa17.26■□□□□ 0.35
RAPGEF3-216ENST00000547856 ST7Q9NRC1 585 aa17.26■□□□□ 0.35
RAPGEF3-216ENST00000547856 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.26■□□□□ 0.35
RAPGEF3-216ENST00000547856 V9GYY5 206 aaPredicted RBP17.26■□□□□ 0.35
RAPGEF3-216ENST00000547856 PTGS1P23219 599 aa17.25■□□□□ 0.35
RAPGEF3-216ENST00000547856 ZNF592Q92610 1267 aa17.25■□□□□ 0.35
RAPGEF3-216ENST00000547856 CCDC183Q5T5S1 534 aa17.24■□□□□ 0.35
RAPGEF3-216ENST00000547856 CASC1Q6TDU7 716 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms