RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 USP32Q8NFA0 1604 aa11.76□□□□□ -0.53
VPS29-203ENST00000546588 ZNF326Q5BKZ1 582 aaKnown RBP11.76□□□□□ -0.53
VPS29-203ENST00000546588 DIEXFQ68CQ4 756 aaKnown RBP11.76□□□□□ -0.53
VPS29-203ENST00000546588 KIF7Q2M1P5 1343 aa11.76□□□□□ -0.53
VPS29-203ENST00000546588 YTHDC2Q9H6S0 1430 aaKnown RBP11.76□□□□□ -0.53
VPS29-203ENST00000546588 NWD1Q149M9 1564 aa11.75□□□□□ -0.53
VPS29-203ENST00000546588 TULP4Q9NRJ4 1543 aa11.75□□□□□ -0.53
VPS29-203ENST00000546588 ST20-MTHFSA0A0A6YYL1 179 aa11.74□□□□□ -0.53
VPS29-203ENST00000546588 CFAP70Q5T0N1 1121 aa11.74□□□□□ -0.53
VPS29-203ENST00000546588 DDX12PQ92771 950 aa11.74□□□□□ -0.53
VPS29-203ENST00000546588 FAM135BQ49AJ0 1406 aa11.74□□□□□ -0.53
VPS29-203ENST00000546588 C11orf95C9JLR9 678 aaPredicted RBP11.73□□□□□ -0.53
VPS29-203ENST00000546588 LRPPRCP42704 1394 aaKnown RBP11.73□□□□□ -0.53
VPS29-203ENST00000546588 HDGFP51858 240 aaKnown RBP11.73□□□□□ -0.53
VPS29-203ENST00000546588 EN1Q05925 392 aaPredicted RBP11.73□□□□□ -0.53
VPS29-203ENST00000546588 TOPAZ1Q8N9V7 1692 aa11.73□□□□□ -0.53
VPS29-203ENST00000546588 RBM33Q96EV2 1170 aaKnown RBP11.73□□□□□ -0.53
VPS29-203ENST00000546588 ABCC11Q96J66 1382 aa11.73□□□□□ -0.53
VPS29-203ENST00000546588 PIK3R4Q99570 1358 aa11.73□□□□□ -0.53
VPS29-203ENST00000546588 PTCH1Q13635 1447 aa11.72□□□□□ -0.53
VPS29-203ENST00000546588 DISP3Q9P2K9 1392 aa11.72□□□□□ -0.53
VPS29-203ENST00000546588 CEBPAP49715 358 aaPredicted RBP11.72□□□□□ -0.53
VPS29-203ENST00000546588 PUS7Q96PZ0 661 aaKnown RBP11.72□□□□□ -0.53
VPS29-203ENST00000546588 TSR3Q9UJK0 312 aaKnown RBP11.72□□□□□ -0.53
VPS29-203ENST00000546588 TSKSQ9UJT2 592 aa11.72□□□□□ -0.53
VPS29-203ENST00000546588 KCNC4Q03721 635 aa11.71□□□□□ -0.53
VPS29-203ENST00000546588 SIRT1Q96EB6 747 aa11.71□□□□□ -0.53
VPS29-203ENST00000546588 GPR37O15354 613 aa11.7□□□□□ -0.54
VPS29-203ENST00000546588 THEMISQ8N1K5 641 aaPredicted RBP11.7□□□□□ -0.54
VPS29-203ENST00000546588 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.7□□□□□ -0.54
VPS29-203ENST00000546588 STRCQ7RTU9 1775 aa11.69□□□□□ -0.54
VPS29-203ENST00000546588 ITSN1Q15811 1721 aa11.69□□□□□ -0.54
VPS29-203ENST00000546588 ANKRD26Q9UPS8 1709 aa11.69□□□□□ -0.54
VPS29-203ENST00000546588 TSR1Q2NL82 804 aaKnown RBP11.69□□□□□ -0.54
VPS29-203ENST00000546588 AKAP12Q02952 1782 aa11.69□□□□□ -0.54
VPS29-203ENST00000546588 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.69□□□□□ -0.54
VPS29-203ENST00000546588 CENPJQ9HC77 1338 aaPredicted RBP11.68□□□□□ -0.54
VPS29-203ENST00000546588 LRCH3Q96II8 777 aa11.68□□□□□ -0.54
VPS29-203ENST00000546588 HIRIP3Q9BW71 556 aaPredicted RBP11.68□□□□□ -0.54
VPS29-203ENST00000546588 HPS5Q9UPZ3 1129 aa11.68□□□□□ -0.54
VPS29-203ENST00000546588 METP08581 1390 aa11.67□□□□□ -0.54
VPS29-203ENST00000546588 MINK1Q8N4C8 1332 aaPredicted RBP11.67□□□□□ -0.54
VPS29-203ENST00000546588 LTKP29376 864 aa11.67□□□□□ -0.54
VPS29-203ENST00000546588 TMF1P82094 1093 aa11.67□□□□□ -0.54
VPS29-203ENST00000546588 CCDC102AQ96A19 550 aa11.67□□□□□ -0.54
VPS29-203ENST00000546588 FAM117AQ9C073 453 aa11.67□□□□□ -0.54
VPS29-203ENST00000546588 LMTK3Q96Q04 1460 aa11.67□□□□□ -0.54
VPS29-203ENST00000546588 MON2Q7Z3U7 1717 aa11.66□□□□□ -0.54
VPS29-203ENST00000546588 NALCNQ8IZF0 1738 aa11.66□□□□□ -0.54
VPS29-203ENST00000546588 PTPRUQ92729 1446 aa11.66□□□□□ -0.54
VPS29-203ENST00000546588 KTN1Q86UP2 1357 aaKnown RBP11.66□□□□□ -0.54
VPS29-203ENST00000546588 NINLQ9Y2I6 1382 aa11.66□□□□□ -0.54
VPS29-203ENST00000546588 MAP2K5Q13163 448 aa11.65□□□□□ -0.54
VPS29-203ENST00000546588 CDCA8Q53HL2 280 aa11.65□□□□□ -0.54
VPS29-203ENST00000546588 PACS2Q86VP3 889 aa11.65□□□□□ -0.54
VPS29-203ENST00000546588 TBX22Q9Y458 520 aa11.65□□□□□ -0.54
VPS29-203ENST00000546588 CDC42BPGQ6DT37 1551 aa11.65□□□□□ -0.54
VPS29-203ENST00000546588 FMN2Q9NZ56 1722 aa11.65□□□□□ -0.54
VPS29-203ENST00000546588 NRKQ7Z2Y5 1582 aa11.64□□□□□ -0.55
VPS29-203ENST00000546588 MAP3K7O43318 606 aa11.64□□□□□ -0.55
VPS29-203ENST00000546588 PRIM1P49642 420 aaKnown RBP11.64□□□□□ -0.55
VPS29-203ENST00000546588 FAM198AQ9UFP1 575 aa11.64□□□□□ -0.55
VPS29-203ENST00000546588 EID1Q9Y6B2 187 aa11.64□□□□□ -0.55
VPS29-203ENST00000546588 NPC1L1Q9UHC9 1359 aa11.64□□□□□ -0.55
VPS29-203ENST00000546588 KIF20BQ96Q89 1820 aa11.63□□□□□ -0.55
VPS29-203ENST00000546588 IRF6O14896 467 aa11.63□□□□□ -0.55
VPS29-203ENST00000546588 GNPATO15228 680 aa11.63□□□□□ -0.55
VPS29-203ENST00000546588 OSBPP22059 807 aa11.63□□□□□ -0.55
VPS29-203ENST00000546588 STRCP1A6NGW2 1772 aa11.63□□□□□ -0.55
VPS29-203ENST00000546588 USP54Q70EL1 1684 aa11.62□□□□□ -0.55
VPS29-203ENST00000546588 NPHP4O75161 1426 aaPredicted RBP11.62□□□□□ -0.55
VPS29-203ENST00000546588 DDX10Q13206 875 aaKnown RBP11.62□□□□□ -0.55
VPS29-203ENST00000546588 TXNDC2Q86VQ3 553 aa11.62□□□□□ -0.55
VPS29-203ENST00000546588 CDCA7LQ96GN5 454 aa11.62□□□□□ -0.55
VPS29-203ENST00000546588 NKTRP30414 1462 aaKnown RBP11.62□□□□□ -0.55
VPS29-203ENST00000546588 FCHSD2O94868 740 aa11.61□□□□□ -0.55
VPS29-203ENST00000546588 PRSS12P56730 875 aa11.61□□□□□ -0.55
VPS29-203ENST00000546588 NUTM2DQ5VT03 806 aaPredicted RBP11.61□□□□□ -0.55
VPS29-203ENST00000546588 TMEM132EQ6IEE7 984 aa11.61□□□□□ -0.55
VPS29-203ENST00000546588 ZMYND15Q9H091 742 aa11.61□□□□□ -0.55
VPS29-203ENST00000546588 ATP7BP35670 1465 aa11.61□□□□□ -0.55
VPS29-203ENST00000546588 XIRP1Q702N8 1843 aaKnown RBP11.6□□□□□ -0.55
VPS29-203ENST00000546588 CD163L1Q9NR16 1453 aa11.6□□□□□ -0.55
VPS29-203ENST00000546588 C3orf80F5H4A9 247 aa11.6□□□□□ -0.55
VPS29-203ENST00000546588 PER1O15534 1290 aaPredicted RBP11.6□□□□□ -0.55
VPS29-203ENST00000546588 TTLL12Q14166 644 aaPredicted RBP11.6□□□□□ -0.55
VPS29-203ENST00000546588 TJAP1Q5JTD0 557 aa11.6□□□□□ -0.55
VPS29-203ENST00000546588 TRAK1Q9UPV9 953 aa11.6□□□□□ -0.55
VPS29-203ENST00000546588 RGPD8O14715 1765 aaPredicted RBP11.59□□□□□ -0.55
VPS29-203ENST00000546588 ATAD2Q6PL18 1390 aa11.59□□□□□ -0.55
VPS29-203ENST00000546588 ROBO2Q9HCK4 1378 aa11.59□□□□□ -0.55
VPS29-203ENST00000546588 FECHP22830 423 aa11.59□□□□□ -0.55
VPS29-203ENST00000546588 HIC1Q14526 733 aa11.59□□□□□ -0.55
VPS29-203ENST00000546588 PARP9Q8IXQ6 854 aa11.59□□□□□ -0.55
VPS29-203ENST00000546588 CERKQ8TCT0 537 aa11.59□□□□□ -0.55
VPS29-203ENST00000546588 DDRGK1Q96HY6 314 aa11.59□□□□□ -0.55
VPS29-203ENST00000546588 PARD3Q8TEW0 1356 aa11.58□□□□□ -0.56
VPS29-203ENST00000546588 CCER2I3L3R5 266 aa11.58□□□□□ -0.56
VPS29-203ENST00000546588 ANKLE2Q86XL3 938 aa11.58□□□□□ -0.56
VPS29-203ENST00000546588 EVC2Q86UK5 1308 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms