RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 FAM182BQ5T319 152 aa27.49■■□□□ 1.99
HMGA2-211ENST00000545998 MARCH10Q8NA82 808 aaPredicted RBP27.48■■□□□ 1.99
HMGA2-211ENST00000545998 ANP32CO43423 234 aa27.48■■□□□ 1.99
HMGA2-211ENST00000545998 ZCRB1Q8TBF4 217 aaKnown RBP27.48■■□□□ 1.99
HMGA2-211ENST00000545998 U2SURPO15042 1029 aaKnown RBP27.47■■□□□ 1.99
HMGA2-211ENST00000545998 PLEKHG2Q9H7P9 1386 aa27.47■■□□□ 1.99
HMGA2-211ENST00000545998 NUDCQ9Y266 331 aa27.46■■□□□ 1.99
HMGA2-211ENST00000545998 HMOX1P09601 288 aa27.44■■□□□ 1.98
HMGA2-211ENST00000545998 FAM196AQ6ZSG2 479 aa27.43■■□□□ 1.98
HMGA2-211ENST00000545998 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.43■■□□□ 1.98
HMGA2-211ENST00000545998 DDX54Q8TDD1 881 aaKnown RBP27.42■■□□□ 1.98
HMGA2-211ENST00000545998 BCL9O00512 1426 aa27.42■■□□□ 1.98
HMGA2-211ENST00000545998 SBF2Q86WG5 1849 aa27.41■■□□□ 1.98
HMGA2-211ENST00000545998 SOCS7O14512 581 aa27.4■■□□□ 1.98
HMGA2-211ENST00000545998 SPG7Q9UQ90 795 aa27.4■■□□□ 1.98
HMGA2-211ENST00000545998 PCDH11XQ9BZA7 1347 aa27.4■■□□□ 1.98
HMGA2-211ENST00000545998 PCDH11YQ9BZA8 1340 aa27.4■■□□□ 1.98
HMGA2-211ENST00000545998 U2AF1L5P0DN76 240 aaPredicted RBP27.39■■□□□ 1.97
HMGA2-211ENST00000545998 U2AF1Q01081 240 aaKnown RBP eCLIP27.39■■□□□ 1.978e-8■■□□□ 13.6
HMGA2-211ENST00000545998 UPF1Q92900 1129 aaKnown RBP eCLIP27.38■■□□□ 1.97
HMGA2-211ENST00000545998 CYP27B1O15528 508 aa27.37■■□□□ 1.97
HMGA2-211ENST00000545998 AMOTQ4VCS5 1084 aa27.36■■□□□ 1.97
HMGA2-211ENST00000545998 PLEKHO1Q53GL0 409 aaPredicted RBP27.36■■□□□ 1.97
HMGA2-211ENST00000545998 RSPH6AQ9H0K4 717 aa27.36■■□□□ 1.97
HMGA2-211ENST00000545998 KAT6BQ8WYB5 2073 aa27.36■■□□□ 1.97
HMGA2-211ENST00000545998 FCHSD2O94868 740 aa27.34■■□□□ 1.97
HMGA2-211ENST00000545998 TNS1Q9HBL0 1735 aaKnown RBP27.32■■□□□ 1.96
HMGA2-211ENST00000545998 PHKG2P15735 406 aa27.31■■□□□ 1.96
HMGA2-211ENST00000545998 PRKAR2BP31323 418 aa27.31■■□□□ 1.96
HMGA2-211ENST00000545998 CCDC184Q52MB2 194 aa27.31■■□□□ 1.96
HMGA2-211ENST00000545998 DOT1LQ8TEK3 1739 aa27.31■■□□□ 1.96
HMGA2-211ENST00000545998 TRIM37O94972 964 aa27.31■■□□□ 1.96
HMGA2-211ENST00000545998 CCDC125Q86Z20 511 aa27.31■■□□□ 1.96
HMGA2-211ENST00000545998 IFNL2Q8IZJ0 200 aa27.31■■□□□ 1.96
HMGA2-211ENST00000545998 NHSQ6T4R5 1651 aa27.3■■□□□ 1.96
HMGA2-211ENST00000545998 NKX1-1Q15270 411 aaPredicted RBP27.3■■□□□ 1.96
HMGA2-211ENST00000545998 ZNF530Q6P9A1 599 aaPredicted RBP27.3■■□□□ 1.96
HMGA2-211ENST00000545998 TOGARAM1Q9Y4F4 1720 aa27.28■■□□□ 1.96
HMGA2-211ENST00000545998 MTHFSDQ2M296 383 aaKnown RBP27.27■■□□□ 1.96
HMGA2-211ENST00000545998 DIEXFQ68CQ4 756 aaKnown RBP27.27■■□□□ 1.96
HMGA2-211ENST00000545998 ACSBG1Q96GR2 724 aa27.27■■□□□ 1.96
HMGA2-211ENST00000545998 PHACTR3Q96KR7 559 aa27.27■■□□□ 1.96
HMGA2-211ENST00000545998 WDR43Q15061 677 aaKnown RBP eCLIP27.26■■□□□ 1.95
HMGA2-211ENST00000545998 PTF1AQ7RTS3 328 aa27.26■■□□□ 1.95
HMGA2-211ENST00000545998 BCL11BQ9C0K0 894 aaPredicted RBP27.26■■□□□ 1.95
HMGA2-211ENST00000545998 KCNQ2O43526 872 aa27.25■■□□□ 1.95
HMGA2-211ENST00000545998 C1orf141Q5JVX7 400 aa27.25■■□□□ 1.95
HMGA2-211ENST00000545998 PLEKHF1Q96S99 279 aa27.25■■□□□ 1.95
HMGA2-211ENST00000545998 ITGB4P16144 1822 aa27.24■■□□□ 1.95
HMGA2-211ENST00000545998 AKAP4Q5JQC9 854 aa27.23■■□□□ 1.95
HMGA2-211ENST00000545998 VIRMAQ69YN4 1812 aaKnown RBP27.23■■□□□ 1.95
HMGA2-211ENST00000545998 HSP90AB1P08238 724 aaKnown RBP27.22■■□□□ 1.95
HMGA2-211ENST00000545998 SF3B2Q13435 895 aaKnown RBP27.22■■□□□ 1.95
HMGA2-211ENST00000545998 GAS2L2Q8NHY3 880 aa27.22■■□□□ 1.95
HMGA2-211ENST00000545998 PNNQ9H307 717 aaKnown RBP27.22■■□□□ 1.95
HMGA2-211ENST00000545998 MRS2Q9HD23 443 aa27.22■■□□□ 1.95
HMGA2-211ENST00000545998 BTAF1O14981 1849 aa27.22■■□□□ 1.95
HMGA2-211ENST00000545998 PRIM1P49642 420 aaKnown RBP27.22■■□□□ 1.95
HMGA2-211ENST00000545998 ADAMTS8Q9UP79 889 aa27.22■■□□□ 1.95
HMGA2-211ENST00000545998 DCAF5Q96JK2 942 aa27.21■■□□□ 1.95
HMGA2-211ENST00000545998 SCN11AQ9UI33 1791 aa27.21■■□□□ 1.95
HMGA2-211ENST00000545998 KDM6AO15550 1401 aaPredicted RBP27.21■■□□□ 1.95
HMGA2-211ENST00000545998 APBA3O96018 575 aa27.18■■□□□ 1.94
HMGA2-211ENST00000545998 SYTL4Q96C24 671 aaPredicted RBP27.18■■□□□ 1.94
HMGA2-211ENST00000545998 ADAMTS7Q9UKP4 1686 aa27.18■■□□□ 1.94
HMGA2-211ENST00000545998 MPRIPQ6WCQ1 1025 aa27.18■■□□□ 1.94
HMGA2-211ENST00000545998 PNISRQ8TF01 805 aaKnown RBP27.18■■□□□ 1.94
HMGA2-211ENST00000545998 NEFMP07197 916 aa27.17■■□□□ 1.94
HMGA2-211ENST00000545998 DEFB132Q7Z7B7 95 aa27.17■■□□□ 1.94
HMGA2-211ENST00000545998 MAP3K5Q99683 1374 aa27.17■■□□□ 1.94
HMGA2-211ENST00000545998 DLG5Q8TDM6 1919 aa27.16■■□□□ 1.94
HMGA2-211ENST00000545998 BAG6P46379 1132 aa27.16■■□□□ 1.94
HMGA2-211ENST00000545998 RGPD3A6NKT7 1758 aaPredicted RBP27.16■■□□□ 1.94
HMGA2-211ENST00000545998 RGPD4Q7Z3J3 1758 aa27.16■■□□□ 1.94
HMGA2-211ENST00000545998 MAPK8IP3Q9UPT6 1336 aa27.15■■□□□ 1.94
HMGA2-211ENST00000545998 GNAT3A8MTJ3 354 aa27.14■■□□□ 1.94
HMGA2-211ENST00000545998 ERVV-2B6SEH9 535 aa27.14■■□□□ 1.94
HMGA2-211ENST00000545998 CCDC146Q8IYE0 955 aa27.14■■□□□ 1.93
HMGA2-211ENST00000545998 LGR6Q9HBX8 967 aa27.14■■□□□ 1.93
HMGA2-211ENST00000545998 PLSCR1O15162 318 aa27.13■■□□□ 1.93
HMGA2-211ENST00000545998 EN1Q05925 392 aaPredicted RBP27.13■■□□□ 1.93
HMGA2-211ENST00000545998 RUNDC1Q96C34 613 aa27.13■■□□□ 1.93
HMGA2-211ENST00000545998 RNMTO43148 476 aaKnown RBP27.12■■□□□ 1.93
HMGA2-211ENST00000545998 PIGBQ92521 554 aa27.12■■□□□ 1.93
HMGA2-211ENST00000545998 NFE2L2Q16236 605 aa27.11■■□□□ 1.93
HMGA2-211ENST00000545998 CAMKK2Q96RR4 588 aa27.11■■□□□ 1.93
HMGA2-211ENST00000545998 TMOD3Q9NYL9 352 aa27.1■■□□□ 1.93
HMGA2-211ENST00000545998 CCER2I3L3R5 266 aa27.09■■□□□ 1.93
HMGA2-211ENST00000545998 MRC1P22897 1456 aa27.09■■□□□ 1.93
HMGA2-211ENST00000545998 IL17REQ8NFR9 667 aa27.09■■□□□ 1.93
HMGA2-211ENST00000545998 CABP4P57796 275 aa27.08■■□□□ 1.93
HMGA2-211ENST00000545998 EZH2Q15910 746 aaKnown RBP27.08■■□□□ 1.93
HMGA2-211ENST00000545998 MIER1Q8N108 512 aa27.08■■□□□ 1.93
HMGA2-211ENST00000545998 RREB1Q92766 1687 aa27.08■■□□□ 1.92
HMGA2-211ENST00000545998 HTATSF1O43719 755 aaKnown RBP27.07■■□□□ 1.92
HMGA2-211ENST00000545998 CEMIPQ8WUJ3 1361 aa27.07■■□□□ 1.92
HMGA2-211ENST00000545998 LY75O60449 1722 aa27.06■■□□□ 1.92
HMGA2-211ENST00000545998 NFATC2IPQ8NCF5 419 aa27.06■■□□□ 1.92
HMGA2-211ENST00000545998 SLC52A2Q9HAB3 445 aa27.06■■□□□ 1.92
HMGA2-211ENST00000545998 SIPA1L3O60292 1781 aaPredicted RBP27.06■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms