RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 ADCY9O60503 1353 aa7.64□□□□□ -1.19
CLSTN3-215ENST00000544584 PPM1GO15355 546 aaPredicted RBP7.64□□□□□ -1.19
CLSTN3-215ENST00000544584 NSD3Q9BZ95 1437 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 FLT4P35916 1363 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 MAP3K19Q56UN5 1328 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 TATP17735 454 aaPredicted RBP7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 HOXC9P31274 260 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 APLP1P51693 650 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 TNS4Q8IZW8 715 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 LTV1Q96GA3 475 aaPredicted RBP7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 ARXQ96QS3 562 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 BCL11BQ9C0K0 894 aaPredicted RBP7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 PANK3Q9H999 370 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 QSER1Q2KHR3 1735 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 LMO7Q8WWI1 1683 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 PCNTO95613 3336 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 PAPPAQ13219 1627 aa7.63□□□□□ -1.19
CLSTN3-215ENST00000544584 NFAT5O94916 1531 aa7.62□□□□□ -1.19
CLSTN3-215ENST00000544584 RRS1Q15050 365 aaKnown RBP7.62□□□□□ -1.19
CLSTN3-215ENST00000544584 MORC1Q86VD1 984 aa7.62□□□□□ -1.19
CLSTN3-215ENST00000544584 PROM2Q8N271 834 aa7.62□□□□□ -1.19
CLSTN3-215ENST00000544584 GPBP1L1Q9HC44 474 aaPredicted RBP7.62□□□□□ -1.19
CLSTN3-215ENST00000544584 BCL9O00512 1426 aa7.61□□□□□ -1.19
CLSTN3-215ENST00000544584 INSRP06213 1382 aa7.61□□□□□ -1.19
CLSTN3-215ENST00000544584 USP54Q70EL1 1684 aa7.61□□□□□ -1.19
CLSTN3-215ENST00000544584 LRRC37A3O60309 1634 aa7.61□□□□□ -1.19
CLSTN3-215ENST00000544584 SLC15A2Q16348 729 aa7.61□□□□□ -1.19
CLSTN3-215ENST00000544584 ZCRB1Q8TBF4 217 aaKnown RBP7.61□□□□□ -1.19
CLSTN3-215ENST00000544584 WNK3Q9BYP7 1800 aa7.6□□□□□ -1.19
CLSTN3-215ENST00000544584 JMYQ8N9B5 988 aa7.6□□□□□ -1.19
CLSTN3-215ENST00000544584 DDX54Q8TDD1 881 aaKnown RBP7.6□□□□□ -1.19
CLSTN3-215ENST00000544584 CARD14Q9BXL6 1004 aa7.6□□□□□ -1.19
CLSTN3-215ENST00000544584 SPG7Q9UQ90 795 aa7.6□□□□□ -1.19
CLSTN3-215ENST00000544584 WASHC2AQ641Q2 1341 aa7.59□□□□□ -1.19
CLSTN3-215ENST00000544584 PCDH11XQ9BZA7 1347 aa7.59□□□□□ -1.19
CLSTN3-215ENST00000544584 PCDH11YQ9BZA8 1340 aa7.59□□□□□ -1.19
CLSTN3-215ENST00000544584 GRIN3BO60391 1043 aa7.59□□□□□ -1.19
CLSTN3-215ENST00000544584 MARCH10Q8NA82 808 aaPredicted RBP7.59□□□□□ -1.19
CLSTN3-215ENST00000544584 STK32BQ9NY57 414 aa7.59□□□□□ -1.19
CLSTN3-215ENST00000544584 TNS2Q63HR2 1409 aa7.59□□□□□ -1.19
CLSTN3-215ENST00000544584 PLEKHG2Q9H7P9 1386 aa7.59□□□□□ -1.2
CLSTN3-215ENST00000544584 HSP90AB1P08238 724 aaKnown RBP7.58□□□□□ -1.2
CLSTN3-215ENST00000544584 YBX3P16989 372 aaKnown RBP eCLIP7.58□□□□□ -1.2
CLSTN3-215ENST00000544584 ZEB1P37275 1124 aaPredicted RBP7.58□□□□□ -1.2
CLSTN3-215ENST00000544584 TNNT2P45379 298 aaPredicted RBP7.58□□□□□ -1.2
CLSTN3-215ENST00000544584 HSP90AB2PQ58FF8 381 aa7.58□□□□□ -1.2
CLSTN3-215ENST00000544584 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.58□□□□□ -1.2
CLSTN3-215ENST00000544584 COL18A1P39060 1754 aa7.58□□□□□ -1.2
CLSTN3-215ENST00000544584 FAM208AQ9UK61 1670 aaKnown RBP7.57□□□□□ -1.2
CLSTN3-215ENST00000544584 KIF7Q2M1P5 1343 aa7.57□□□□□ -1.2
CLSTN3-215ENST00000544584 LTN1O94822 1766 aa7.57□□□□□ -1.2
CLSTN3-215ENST00000544584 KIF3CO14782 793 aa7.57□□□□□ -1.2
CLSTN3-215ENST00000544584 AMOTQ4VCS5 1084 aa7.57□□□□□ -1.2
CLSTN3-215ENST00000544584 SLC27A3Q5K4L6 730 aa7.57□□□□□ -1.2
CLSTN3-215ENST00000544584 SYTL4Q96C24 671 aaPredicted RBP7.57□□□□□ -1.2
CLSTN3-215ENST00000544584 CFAP53Q96M91 514 aa7.57□□□□□ -1.2
CLSTN3-215ENST00000544584 EMILIN1Q9Y6C2 1016 aa7.57□□□□□ -1.2
CLSTN3-215ENST00000544584 KAT6BQ8WYB5 2073 aa7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 TXNRD1Q16881 649 aa7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 PLEKHO1Q53GL0 409 aaPredicted RBP7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 NBPF6Q5VWK0 638 aa7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 PTF1AQ7RTS3 328 aa7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 SMARCC1Q92922 1105 aaPredicted RBP7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 KLRG1Q96E93 195 aa7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 NBPF4Q96M43 638 aa7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 POLKQ9UBT6 870 aa7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 TUBGCP6Q96RT7 1819 aa7.56□□□□□ -1.2
CLSTN3-215ENST00000544584 KIF20BQ96Q89 1820 aa7.55□□□□□ -1.2
CLSTN3-215ENST00000544584 NHSQ6T4R5 1651 aa7.55□□□□□ -1.2
CLSTN3-215ENST00000544584 C1orf141Q5JVX7 400 aa7.55□□□□□ -1.2
CLSTN3-215ENST00000544584 IFNL2Q8IZJ0 200 aa7.55□□□□□ -1.2
CLSTN3-215ENST00000544584 PELP1Q8IZL8 1130 aaKnown RBP7.55□□□□□ -1.2
CLSTN3-215ENST00000544584 NLGN2Q8NFZ4 835 aa7.55□□□□□ -1.2
CLSTN3-215ENST00000544584 ACSBG1Q96GR2 724 aa7.55□□□□□ -1.2
CLSTN3-215ENST00000544584 NUDCQ9Y266 331 aa7.55□□□□□ -1.2
CLSTN3-215ENST00000544584 NPC1L1Q9UHC9 1359 aa7.55□□□□□ -1.2
CLSTN3-215ENST00000544584 NEFMP07197 916 aa7.54□□□□□ -1.2
CLSTN3-215ENST00000544584 FBLN1P23142 703 aa7.54□□□□□ -1.2
CLSTN3-215ENST00000544584 WWC3Q9ULE0 1092 aa7.54□□□□□ -1.2
CLSTN3-215ENST00000544584 PRIM1P49642 420 aaKnown RBP7.53□□□□□ -1.2
CLSTN3-215ENST00000544584 EIF4A2Q14240 407 aaKnown RBP7.53□□□□□ -1.2
CLSTN3-215ENST00000544584 AMER1Q5JTC6 1135 aaPredicted RBP7.53□□□□□ -1.2
CLSTN3-215ENST00000544584 CC2D1BQ5T0F9 858 aaKnown RBP7.53□□□□□ -1.2
CLSTN3-215ENST00000544584 USHBP1Q8N6Y0 703 aa7.53□□□□□ -1.2
CLSTN3-215ENST00000544584 SLC16A10Q8TF71 515 aa7.53□□□□□ -1.2
CLSTN3-215ENST00000544584 EYA1Q99502 592 aa7.53□□□□□ -1.2
CLSTN3-215ENST00000544584 RGPD5Q99666 1765 aa7.53□□□□□ -1.2
CLSTN3-215ENST00000544584 DIAPH1O60610 1272 aaKnown RBP7.52□□□□□ -1.21
CLSTN3-215ENST00000544584 TOMM70O94826 608 aa7.52□□□□□ -1.21
CLSTN3-215ENST00000544584 FLAD1Q8NFF5 587 aa7.52□□□□□ -1.21
CLSTN3-215ENST00000544584 ZNF526Q8TF50 670 aaPredicted RBP7.52□□□□□ -1.21
CLSTN3-215ENST00000544584 DCAF5Q96JK2 942 aa7.52□□□□□ -1.21
CLSTN3-215ENST00000544584 PNNQ9H307 717 aaKnown RBP7.52□□□□□ -1.21
CLSTN3-215ENST00000544584 TMOD3Q9NYL9 352 aa7.52□□□□□ -1.21
CLSTN3-215ENST00000544584 BTAF1O14981 1849 aa7.52□□□□□ -1.21
CLSTN3-215ENST00000544584 CICQ96RK0 1608 aaPredicted RBP7.52□□□□□ -1.21
CLSTN3-215ENST00000544584 ERVV-2B6SEH9 535 aa7.51□□□□□ -1.21
CLSTN3-215ENST00000544584 POLD1P28340 1107 aa7.51□□□□□ -1.21
CLSTN3-215ENST00000544584 MTHFSP49914 203 aa7.51□□□□□ -1.21
CLSTN3-215ENST00000544584 NKX1-1Q15270 411 aaPredicted RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms