RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 LRRC37A3O60309 1634 aa19.31■□□□□ 0.68
TNFRSF1A-216ENST00000543995 KDRP35968 1356 aa19.31■□□□□ 0.68
TNFRSF1A-216ENST00000543995 PDE3BQ13370 1112 aa19.3■□□□□ 0.68
TNFRSF1A-216ENST00000543995 MIER1Q8N108 512 aa19.3■□□□□ 0.68
TNFRSF1A-216ENST00000543995 OVOS2A0A0G2JMS6 1433 aa19.29■□□□□ 0.68
TNFRSF1A-216ENST00000543995 ZCRB1Q8TBF4 217 aaKnown RBP19.28■□□□□ 0.68
TNFRSF1A-216ENST00000543995 TNS2Q63HR2 1409 aa19.28■□□□□ 0.68
TNFRSF1A-216ENST00000543995 FCHSD2O94868 740 aa19.27■□□□□ 0.68
TNFRSF1A-216ENST00000543995 KRT27Q7Z3Y8 459 aa19.27■□□□□ 0.68
TNFRSF1A-216ENST00000543995 PRKAR2BP31323 418 aa19.26■□□□□ 0.67
TNFRSF1A-216ENST00000543995 RSPH6AQ9H0K4 717 aa19.26■□□□□ 0.67
TNFRSF1A-216ENST00000543995 SPG7Q9UQ90 795 aa19.26■□□□□ 0.67
TNFRSF1A-216ENST00000543995 PKD1L3Q7Z443 1732 aa19.26■□□□□ 0.67
TNFRSF1A-216ENST00000543995 CCER2I3L3R5 266 aa19.25■□□□□ 0.67
TNFRSF1A-216ENST00000543995 PLEKHO1Q53GL0 409 aaPredicted RBP19.25■□□□□ 0.67
TNFRSF1A-216ENST00000543995 DDX54Q8TDD1 881 aaKnown RBP19.25■□□□□ 0.67
TNFRSF1A-216ENST00000543995 NEFMP07197 916 aa19.25■□□□□ 0.67
TNFRSF1A-216ENST00000543995 PNNQ9H307 717 aaKnown RBP19.25■□□□□ 0.67
TNFRSF1A-216ENST00000543995 SHANK3Q9BYB0 1731 aa19.24■□□□□ 0.67
TNFRSF1A-216ENST00000543995 AMOTQ4VCS5 1084 aa19.24■□□□□ 0.67
TNFRSF1A-216ENST00000543995 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.24■□□□□ 0.67
TNFRSF1A-216ENST00000543995 ADAMTS8Q9UP79 889 aa19.24■□□□□ 0.67
TNFRSF1A-216ENST00000543995 PCDH11XQ9BZA7 1347 aa19.24■□□□□ 0.67
TNFRSF1A-216ENST00000543995 PCDH11YQ9BZA8 1340 aa19.24■□□□□ 0.67
TNFRSF1A-216ENST00000543995 PLEKHG2Q9H7P9 1386 aa19.23■□□□□ 0.67
TNFRSF1A-216ENST00000543995 FAM182BQ5T319 152 aa19.22■□□□□ 0.67
TNFRSF1A-216ENST00000543995 PNISRQ8TF01 805 aaKnown RBP19.22■□□□□ 0.67
TNFRSF1A-216ENST00000543995 ILDR2Q71H61 639 aa19.21■□□□□ 0.67
TNFRSF1A-216ENST00000543995 MARCH10Q8NA82 808 aaPredicted RBP19.21■□□□□ 0.67
TNFRSF1A-216ENST00000543995 ZNF530Q6P9A1 599 aaPredicted RBP19.2■□□□□ 0.66
TNFRSF1A-216ENST00000543995 FAM9BQ8IZU0 186 aa19.2■□□□□ 0.66
TNFRSF1A-216ENST00000543995 MAPK8IP3Q9UPT6 1336 aa19.2■□□□□ 0.66
TNFRSF1A-216ENST00000543995 C1orf141Q5JVX7 400 aa19.2■□□□□ 0.66
TNFRSF1A-216ENST00000543995 CCDC146Q8IYE0 955 aa19.2■□□□□ 0.66
TNFRSF1A-216ENST00000543995 PHACTR3Q96KR7 559 aa19.2■□□□□ 0.66
TNFRSF1A-216ENST00000543995 CYP27B1O15528 508 aa19.19■□□□□ 0.66
TNFRSF1A-216ENST00000543995 MTHFSDQ2M296 383 aaKnown RBP19.19■□□□□ 0.66
TNFRSF1A-216ENST00000543995 IFNL2Q8IZJ0 200 aa19.19■□□□□ 0.66
TNFRSF1A-216ENST00000543995 GAS2L2Q8NHY3 880 aa19.19■□□□□ 0.66
TNFRSF1A-216ENST00000543995 FAM196AQ6ZSG2 479 aa19.18■□□□□ 0.66
TNFRSF1A-216ENST00000543995 PLEKHF1Q96S99 279 aa19.18■□□□□ 0.66
TNFRSF1A-216ENST00000543995 KAT6BQ8WYB5 2073 aa19.17■□□□□ 0.66
TNFRSF1A-216ENST00000543995 PHKG2P15735 406 aa19.17■□□□□ 0.66
TNFRSF1A-216ENST00000543995 RUNDC1Q96C34 613 aa19.17■□□□□ 0.66
TNFRSF1A-216ENST00000543995 HSP90AB1P08238 724 aaKnown RBP19.15■□□□□ 0.66
TNFRSF1A-216ENST00000543995 AKAP4Q5JQC9 854 aa19.15■□□□□ 0.66
TNFRSF1A-216ENST00000543995 DOT1LQ8TEK3 1739 aa19.13■□□□□ 0.65
TNFRSF1A-216ENST00000543995 SBF2Q86WG5 1849 aa19.13■□□□□ 0.65
TNFRSF1A-216ENST00000543995 DLG5Q8TDM6 1919 aa19.13■□□□□ 0.65
TNFRSF1A-216ENST00000543995 VIRMAQ69YN4 1812 aaKnown RBP19.12■□□□□ 0.65
TNFRSF1A-216ENST00000543995 GNAT3A8MTJ3 354 aa19.12■□□□□ 0.65
TNFRSF1A-216ENST00000543995 NKX1-1Q15270 411 aaPredicted RBP19.12■□□□□ 0.65
TNFRSF1A-216ENST00000543995 ACSBG1Q96GR2 724 aa19.12■□□□□ 0.65
TNFRSF1A-216ENST00000543995 MAP3K5Q99683 1374 aa19.12■□□□□ 0.65
TNFRSF1A-216ENST00000543995 BCL9O00512 1426 aa19.11■□□□□ 0.65
TNFRSF1A-216ENST00000543995 NFE2L2Q16236 605 aa19.11■□□□□ 0.65
TNFRSF1A-216ENST00000543995 MPRIPQ6WCQ1 1025 aa19.11■□□□□ 0.65
TNFRSF1A-216ENST00000543995 SYTL4Q96C24 671 aaPredicted RBP19.11■□□□□ 0.65
TNFRSF1A-216ENST00000543995 DCAF5Q96JK2 942 aa19.11■□□□□ 0.65
TNFRSF1A-216ENST00000543995 NEUROD2Q15784 382 aa19.1■□□□□ 0.65
TNFRSF1A-216ENST00000543995 TRIM37O94972 964 aa19.1■□□□□ 0.65
TNFRSF1A-216ENST00000543995 TMPOP42166 694 aaKnown RBP19.1■□□□□ 0.65
TNFRSF1A-216ENST00000543995 RTF1Q92541 710 aaKnown RBP19.1■□□□□ 0.65
TNFRSF1A-216ENST00000543995 RRP7AQ9Y3A4 280 aaKnown RBP19.1■□□□□ 0.65
TNFRSF1A-216ENST00000543995 TOGARAM1Q9Y4F4 1720 aa19.1■□□□□ 0.65
TNFRSF1A-216ENST00000543995 SCN11AQ9UI33 1791 aa19.09■□□□□ 0.65
TNFRSF1A-216ENST00000543995 RIPK4P57078 832 aa19.09■□□□□ 0.65
TNFRSF1A-216ENST00000543995 KDM6AO15550 1401 aaPredicted RBP19.08■□□□□ 0.65
TNFRSF1A-216ENST00000543995 ITGB4P16144 1822 aa19.08■□□□□ 0.65
TNFRSF1A-216ENST00000543995 NHSQ6T4R5 1651 aa19.08■□□□□ 0.64
TNFRSF1A-216ENST00000543995 APAF1O14727 1248 aa19.08■□□□□ 0.64
TNFRSF1A-216ENST00000543995 PRIM1P49642 420 aaKnown RBP19.08■□□□□ 0.64
TNFRSF1A-216ENST00000543995 RNMTO43148 476 aaKnown RBP19.07■□□□□ 0.64
TNFRSF1A-216ENST00000543995 LGR6Q9HBX8 967 aa19.07■□□□□ 0.64
TNFRSF1A-216ENST00000543995 SENP3-EIF4A1A0A087X0R7 540 aa19.06■□□□□ 0.64
TNFRSF1A-216ENST00000543995 KCNQ2O43526 872 aa19.06■□□□□ 0.64
TNFRSF1A-216ENST00000543995 ERVV-2B6SEH9 535 aa19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 HTATSF1O43719 755 aaKnown RBP19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 CABP4P57796 275 aa19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 SF3B2Q13435 895 aaKnown RBP19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 BCL11BQ9C0K0 894 aaPredicted RBP19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 EP400Q96L91 3159 aa19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 LMOD3Q0VAK6 560 aa19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 DCTN1Q14203 1278 aa19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 MCM10Q7L590 875 aa19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 TMOD3Q9NYL9 352 aa19.05■□□□□ 0.64
TNFRSF1A-216ENST00000543995 ADAMTS7Q9UKP4 1686 aa19.04■□□□□ 0.64
TNFRSF1A-216ENST00000543995 PTF1AQ7RTS3 328 aa19.04■□□□□ 0.64
TNFRSF1A-216ENST00000543995 IL17REQ8NFR9 667 aa19.04■□□□□ 0.64
TNFRSF1A-216ENST00000543995 BTAF1O14981 1849 aa19.03■□□□□ 0.64
TNFRSF1A-216ENST00000543995 TEFQ10587 303 aa19.03■□□□□ 0.64
TNFRSF1A-216ENST00000543995 TNS1Q9HBL0 1735 aaKnown RBP19.03■□□□□ 0.64
TNFRSF1A-216ENST00000543995 NFATC2IPQ8NCF5 419 aa19.02■□□□□ 0.64
TNFRSF1A-216ENST00000543995 APBA3O96018 575 aa19.01■□□□□ 0.63
TNFRSF1A-216ENST00000543995 CCDC125Q86Z20 511 aa19.01■□□□□ 0.63
TNFRSF1A-216ENST00000543995 UPF1Q92900 1129 aaKnown RBP eCLIP19.01■□□□□ 0.638e-9■■■■□ 21.1
TNFRSF1A-216ENST00000543995 SLC52A2Q9HAB3 445 aa19.01■□□□□ 0.63
TNFRSF1A-216ENST00000543995 SALL2Q9Y467 1007 aaPredicted RBP19.01■□□□□ 0.63
TNFRSF1A-216ENST00000543995 CEMIPQ8WUJ3 1361 aa19.01■□□□□ 0.63
TNFRSF1A-216ENST00000543995 PIGBQ92521 554 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms